Package evaluation to load PALEOboxes on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T11:34:18.212 ################################################################################ # Set-up # Set-up completed after 0.07s ################################################################################ # Installation # Installing PALEOboxes... Resolving package versions... Installed NetCDF_jll ────────────────── v401.900.300+0 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed InlineStrings ─────────────── v1.4.5 Installed DiskArrays ────────────────── v0.4.18 Installed MacroTools ────────────────── v0.5.16 Installed CFTime ────────────────────── v0.2.4 Installed DataStructures ────────────── v0.19.3 Installed Adapt ─────────────────────── v4.4.0 Installed libaec_jll ────────────────── v1.1.4+0 Installed ConstructionBase ──────────── v1.6.0 Installed MPICH_jll ─────────────────── v4.3.2+0 Installed ExprTools ─────────────────── v0.1.10 Installed CodecZlib ─────────────────── v0.7.8 Installed ArnoldiMethod ─────────────── v0.4.0 Installed TranscodingStreams ────────── v0.11.3 Installed OrderedCollections ────────── v1.8.1 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed Compat ────────────────────── v4.18.1 Installed SIMD ──────────────────────── v3.7.2 Installed InvertedIndices ───────────── v1.3.1 Installed Statistics ────────────────── v1.11.1 Installed PrecompileTools ───────────── v1.3.3 Installed DataValueInterfaces ───────── v1.0.0 Installed Atomix ────────────────────── v1.1.2 Installed StringEncodings ───────────── v0.3.7 Installed TimerOutputs ──────────────── v0.5.29 Installed SentinelArrays ────────────── v1.4.8 Installed StructArrays ──────────────── v0.7.2 Installed OffsetArrays ──────────────── v1.17.0 Installed Xorg_libpciaccess_jll ─────── v0.18.1+0 Installed Blosc_jll ─────────────────── v1.21.7+0 Installed Compiler ──────────────────── v0.1.1 Installed StaticArraysCore ──────────── v1.4.4 Installed CodeTracking ──────────────── v2.0.1 Installed StaticArrays ──────────────── v1.9.15 Installed StructUtils ───────────────── v2.5.1 Installed ChainRulesCore ────────────── v1.26.0 Installed Revise ────────────────────── v3.12.0 Installed AxisAlgorithms ────────────── v1.1.0 Installed Ratios ────────────────────── v0.4.5 Installed StringManipulation ────────── v0.4.1 Installed Requires ──────────────────── v1.3.1 Installed SimpleTraits ──────────────── v0.9.5 Installed libzip_jll ────────────────── v1.11.3+0 Installed LoweredCodeUtils ──────────── v3.4.4 Installed YAML ──────────────────────── v0.4.12 Installed HDF5_jll ──────────────────── v1.14.6+0 Installed TestEnv ───────────────────── v1.102.2 Installed Interpolations ────────────── v0.15.1 Installed Infiltrator ───────────────── v1.9.4 Installed OpenMPI_jll ───────────────── v5.0.8+0 Installed Parsers ───────────────────── v2.8.3 Installed BufferedStreams ───────────── v1.2.2 Installed UnsafeAtomics ─────────────── v0.3.0 Installed JuliaInterpreter ──────────── v0.10.6 Installed JSON ──────────────────────── v1.2.0 Installed Hwloc_jll ─────────────────── v2.12.2+0 Installed PrettyTables ──────────────── v3.1.0 Installed WoodburyMatrices ──────────── v1.0.0 Installed Tables ────────────────────── v1.12.1 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed Preferences ───────────────── v1.5.0 Installed DataFrames ────────────────── v1.8.1 Installed MPIPreferences ────────────── v0.1.11 Installed SLEEF_jll ─────────────────── v3.9.0+0 Installed PooledArrays ──────────────── v1.4.3 Installed CommonDataModel ───────────── v0.4.1 Installed NCDatasets ────────────────── v0.14.9 Installed BenchmarkTools ────────────── v1.6.3 Installed JLLWrappers ───────────────── v1.7.1 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed HDF5 ──────────────────────── v0.17.2 Installed PALEOboxes ────────────────── v0.22.4 Installed SortingAlgorithms ─────────── v1.2.2 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed XZ_jll ────────────────────── v5.8.1+0 Installed LRUCache ──────────────────── v1.6.2 Installed Graphs ────────────────────── v1.13.1 Installed MPItrampoline_jll ─────────── v5.5.4+0 Installed Crayons ───────────────────── v4.1.1 Installed Inflate ───────────────────── v0.1.5 Installed DocStringExtensions ───────── v0.9.5 Installed MAT ───────────────────────── v0.10.7 Installing 15 artifacts Installed artifact Blosc 44.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Libiconv 1.9 MiB Installed artifact MPICH 3.3 MiB Installed artifact NetCDF 936.0 KiB Installed artifact Hwloc 3.5 MiB Installed artifact XML2 2.5 MiB Installed artifact HDF5 5.7 MiB Installed artifact libaec 49.6 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact libzip 177.6 KiB Installed artifact XZ 1.5 MiB Installed artifact SLEEF 2.7 MiB Installed artifact Lz4 239.7 KiB Installed artifact LLVMOpenMP 661.6 KiB Updating `~/.julia/environments/v1.14/Project.toml` [804b410e] + PALEOboxes v0.22.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [79e6a3ab] + Adapt v4.4.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.2 [13072b0f] + AxisAlgorithms v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.3 [e1450e63] + BufferedStreams v1.2.2 [179af706] + CFTime v0.2.4 [d360d2e6] + ChainRulesCore v1.26.0 [da1fd8a2] + CodeTracking v2.0.1 [944b1d66] + CodecZlib v0.7.8 [1fbeeb36] + CommonDataModel v0.4.1 [34da2185] + Compat v4.18.1 [807dbc54] + Compiler v0.1.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [3c3547ce] + DiskArrays v0.4.18 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [86223c79] + Graphs v1.13.1 [f67ccb44] + HDF5 v0.17.2 [5903a43b] + Infiltrator v1.9.4 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 ⌅ [a98d9a8b] + Interpolations v0.15.1 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.2.0 [aa1ae85d] + JuliaInterpreter v0.10.6 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [6f1432cf] + LoweredCodeUtils v3.4.4 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [85f8d34a] + NCDatasets v0.14.9 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [804b410e] + PALEOboxes v0.22.4 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [295af30f] + Revise v3.12.0 [fdea26ae] + SIMD v3.7.2 [91c51154] + SentinelArrays v1.4.8 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.2 [ec057cc2] + StructUtils v2.5.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [1e6cf692] + TestEnv v1.102.2 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [013be700] + UnsafeAtomics v0.3.0 [efce3f68] + WoodburyMatrices v1.0.0 ⌅ [ddb6d928] + YAML v0.4.12 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 [63e82ce6] + SLEEF_jll v3.9.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 12.14s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 1285.0 ms ✓ Crayons 2705.2 ms ✓ MacroTools 1125.5 ms ✓ InlineStrings 566.2 ms ✓ Reexport 777.7 ms ✓ Statistics 621.9 ms ✓ DataAPI 768.0 ms ✓ ConstructionBase 558.8 ms ✓ DataValueInterfaces 668.9 ms ✓ StaticArraysCore 800.6 ms ✓ Requires 2313.0 ms ✓ UnsafeAtomics 885.8 ms ✓ OrderedCollections 629.3 ms ✓ InvertedIndices 775.6 ms ✓ DocStringExtensions 1099.4 ms ✓ OffsetArrays 938.4 ms ✓ WoodburyMatrices 726.2 ms ✓ Inflate 614.2 ms ✓ ExprTools 743.0 ms ✓ BufferedStreams 720.9 ms ✓ LRUCache 1128.7 ms ✓ Compiler 883.2 ms ✓ TranscodingStreams 576.8 ms ✓ IteratorInterfaceExtensions 629.0 ms ✓ LaTeXStrings 1802.7 ms ✓ SentinelArrays 1595.9 ms ✓ CFTime 1004.1 ms ✓ StructUtils 866.3 ms ✓ Compat 831.5 ms ✓ Preferences 1100.1 ms ✓ CodeTracking 3005.3 ms ✓ Infiltrator WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 3612.2 ms ✓ TestEnv 2418.7 ms ✓ SimpleTraits 880.2 ms ✓ Statistics → SparseArraysExt 761.5 ms ✓ Missings 728.7 ms ✓ PooledArrays 738.5 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 693.5 ms ✓ Adapt 592.1 ms ✓ Ratios 695.8 ms ✓ Atomix 2346.9 ms ✓ DataStructures 969.0 ms ✓ AxisAlgorithms 2060.7 ms ✓ TimerOutputs 882.4 ms ✓ LRUCache → SerializationExt 696.5 ms ✓ CodecZlib 558.8 ms ✓ TableTraits 586.3 ms ✓ Compat → CompatLinearAlgebraExt 1050.9 ms ✓ JLLWrappers 935.8 ms ✓ MPIPreferences 628.2 ms ✓ PrecompileTools 5829.0 ms ✓ JuliaInterpreter 1683.2 ms ✓ DiskArrays 910.8 ms ✓ Adapt → AdaptSparseArraysExt 716.9 ms ✓ OffsetArrays → OffsetArraysAdaptExt 935.1 ms ✓ SortingAlgorithms 1149.7 ms ✓ Tables 2034.3 ms ✓ ChainRulesCore 1077.8 ms ✓ libaec_jll 1064.3 ms ✓ Xorg_libpciaccess_jll 1109.1 ms ✓ Bzip2_jll 885.6 ms ✓ LLVMOpenMP_jll 898.8 ms ✓ Libiconv_jll 962.7 ms ✓ Lz4_jll 975.4 ms ✓ XZ_jll 774.6 ms ✓ MicrosoftMPI_jll 2487.0 ms ✓ MPItrampoline_jll 7829.7 ms ✓ StaticArrays 1874.4 ms ✓ StringManipulation 10101.3 ms ✓ SIMD 11757.2 ms ✓ Parsers 15867.3 ms ✓ LoweredCodeUtils 2861.3 ms ✓ CommonDataModel 1314.4 ms ✓ StructArrays 828.8 ms ✓ StructUtils → StructUtilsTablesExt 1316.0 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1325.7 ms ✓ SLEEF_jll 1262.2 ms ✓ StringEncodings 1664.4 ms ✓ XML2_jll 1220.4 ms ✓ Blosc_jll 1495.4 ms ✓ libzip_jll 1297.8 ms ✓ StaticArrays → StaticArraysStatisticsExt 1344.0 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 3473.3 ms ✓ ArnoldiMethod 1307.0 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1254.7 ms ✓ Adapt → AdaptStaticArraysExt 35488.8 ms ✓ PrettyTables 7001.0 ms ✓ JSON 783.2 ms ✓ InlineStrings → ParsersExt ┌ Warning: precompile directive │ precompile(Tuple{mbody.sig.parameters[1], Symbol, Bool, Bool, Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:skip_include,), Tuple{Bool}}}, typeof(methods_by_execution!), Compiled, MI, Module, Expr}) │ failed. Please report an issue in Revise (after checking for duplicates) or remove this directive. └ @ Revise ~/.julia/packages/Revise/CRZQG/src/precompile.jl:65 6959.5 ms ✓ Revise 960.6 ms ✓ StructArrays → StructArraysSparseArraysExt 713.1 ms ✓ StructArrays → StructArraysLinearAlgebraExt 663.2 ms ✓ StructArrays → StructArraysAdaptExt 1137.4 ms ✓ StructArrays → StructArraysStaticArraysExt 1789.3 ms ✓ YAML 1057.8 ms ✓ Hwloc_jll 7112.1 ms ✓ Graphs 3291.1 ms ✓ Interpolations 66966.8 ms ✓ DataFrames 2779.9 ms ✓ BenchmarkTools 3130.8 ms ✓ Revise → DistributedExt 3756.7 ms ✓ MPICH_jll 3331.0 ms ✓ OpenMPI_jll 4693.6 ms ✓ HDF5_jll 12019.3 ms ✓ HDF5 4427.0 ms ✓ NetCDF_jll 6584.0 ms ✓ MAT 14120.3 ms ✓ NCDatasets ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace:  [1] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [2] top-level scope  @ ~/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:124  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [5] top-level scope  @ stdin:5  [6] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [8] include_string  @ ./loading.jl:3004 [inlined]  [9] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [10] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:1 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Revise │ ┌ Warning: precompile directive │ │ precompile(Tuple{mbody.sig.parameters[1], Symbol, Bool, Bool, Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:skip_include,), Tuple{Bool}}}, typeof(methods_by_execution!), Compiled, MI, Module, Expr}) │ │ failed. Please report an issue in Revise (after checking for duplicates) or remove this directive. │ └ @ Revise ~/.julia/packages/Revise/CRZQG/src/precompile.jl:65 └ Precompilation completed after 350.97s ################################################################################ # Loading # Loading PALEOboxes... ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace:  [1] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [2] top-level scope  @ ~/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:124  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [5] top-level scope  @ stdin:5  [6] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [8] include_string  @ ./loading.jl:3004 [inlined]  [9] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [10] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ PALEOboxes │ [Output was shown above] └ ERROR: The following 1 package failed to precompile: PALEOboxes Failed to precompile PALEOboxes [804b410e-d900-4b2a-9ecd-f5a06d4c1fd4] to "/home/pkgeval/.julia/compiled/v1.14/PALEOboxes/jl_Ggnxjj" (ProcessExited(1)). Loading failed after 18.8s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using PALEOboxes'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [7] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 457.37s: package fails to precompile