Package evaluation to load OrthogonalSphericalShellGrids on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T10:50:02.409 ################################################################################ # Set-up # Set-up completed after 0.11s ################################################################################ # Installation # Installing OrthogonalSphericalShellGrids... Resolving package versions... Installed ChunkCodecLibZstd ───────────── v1.0.0 Installed Glob ────────────────────────── v1.3.1 Installed MacroTools ──────────────────── v0.5.16 Installed LLVMExtra_jll ───────────────── v0.0.38+0 Installed Quaternions ─────────────────── v0.7.6 Installed DataStructures ──────────────── v0.19.3 Installed JLD2 ────────────────────────── v0.6.2 Installed MPI ─────────────────────────── v0.20.23 Installed PkgVersion ──────────────────── v0.3.3 Installed MPICH_jll ───────────────────── v4.3.2+0 Installed MKL_jll ─────────────────────── v2025.2.0+0 Installed Adapt ───────────────────────── v4.4.0 Installed ArnoldiMethod ───────────────── v0.4.0 Installed ConstructionBase ────────────── v1.6.0 Installed SeawaterPolynomials ─────────── v0.3.10 Installed oneTBB_jll ──────────────────── v2022.0.0+1 Installed ReactantCore ────────────────── v0.1.16 Installed MicrosoftMPI_jll ────────────── v10.1.4+3 Installed ExpressionExplorer ──────────── v1.1.3 Installed HashArrayMappedTries ────────── v0.2.0 Installed OrderedCollections ──────────── v1.8.1 Installed OrthogonalSphericalShellGrids ─ v0.2.2 Installed IteratorInterfaceExtensions ─── v1.0.0 Installed DataAPI ─────────────────────── v1.16.0 Installed Xorg_libpciaccess_jll ───────── v0.18.1+0 Installed Statistics ──────────────────── v1.11.1 Installed Krylov ──────────────────────── v0.10.2 Installed Atomix ──────────────────────── v1.1.2 Installed StatsAPI ────────────────────── v1.7.1 Installed PrecompileTools ─────────────── v1.3.3 Installed GPUArrays ───────────────────── v11.2.6 Installed IntelOpenMP_jll ─────────────── v2025.2.0+0 Installed StructArrays ────────────────── v0.7.2 Installed DataValueInterfaces ─────────── v1.0.0 Installed CubedSphere ─────────────────── v0.3.4 Installed CEnum ───────────────────────── v0.5.0 Installed StaticArraysCore ────────────── v1.4.4 Installed RealDot ─────────────────────── v0.1.0 Installed OffsetArrays ────────────────── v1.17.0 Installed FileIO ──────────────────────── v1.17.1 Installed StaticArrays ────────────────── v1.9.15 Installed GPUArraysCore ───────────────── v0.2.0 Installed AbstractFFTs ────────────────── v1.5.0 Installed Distances ───────────────────── v0.10.12 Installed Metis ───────────────────────── v1.5.0 Installed SimpleTraits ────────────────── v0.9.5 Installed Requires ────────────────────── v1.3.1 Installed ChunkCodecLibZlib ───────────── v1.0.0 Installed OpenMPI_jll ─────────────────── v5.0.8+0 Installed Hwloc_jll ───────────────────── v2.12.2+0 Installed ScopedValues ────────────────── v1.5.0 Installed UnsafeAtomics ───────────────── v0.3.0 Installed KernelAbstractions ──────────── v0.9.39 Installed MuladdMacro ─────────────────── v0.2.4 Installed XML2_jll ────────────────────── v2.13.9+0 Installed Tables ──────────────────────── v1.12.1 Installed Reexport ────────────────────── v1.2.2 Installed MPIPreferences ──────────────── v0.1.11 Installed Preferences ─────────────────── v1.5.0 Installed KrylovPreconditioners ───────── v0.3.6 Installed TaylorSeries ────────────────── v0.20.9 Installed Rotations ───────────────────── v1.7.1 Installed FFTW ────────────────────────── v1.10.0 Installed FFTW_jll ────────────────────── v3.3.11+0 Installed Oceananigans ────────────────── v0.99.2 Installed LLVM ────────────────────────── v9.4.4 Installed JLLWrappers ─────────────────── v1.7.1 Installed Libiconv_jll ────────────────── v1.18.0+0 Installed TableTraits ─────────────────── v1.0.1 Installed ChunkCodecCore ──────────────── v1.0.0 Installed Crayons ─────────────────────── v4.1.1 Installed METIS_jll ───────────────────── v5.1.3+0 Installed MPItrampoline_jll ───────────── v5.5.4+0 Installed Inflate ─────────────────────── v0.1.5 Installed DocStringExtensions ─────────── v0.9.5 Installed Graphs ──────────────────────── v1.13.1 Installing 8 artifacts Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact METIS 1.1 MiB Installed artifact Libiconv 1.9 MiB Installed artifact FFTW 2.2 MiB Installed artifact XML2 2.5 MiB Installed artifact Hwloc 3.5 MiB Installed artifact MPICH 3.3 MiB Installed artifact LLVMExtra 3.2 MiB Updating `~/.julia/environments/v1.14/Project.toml` [c2be9673] + OrthogonalSphericalShellGrids v0.2.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.4.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.2 [fa961155] + CEnum v0.5.0 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [7445602f] + CubedSphere v0.3.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [21656369] + ExpressionExplorer v1.1.3 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.1 [0c68f7d7] + GPUArrays v11.2.6 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [076d061b] + HashArrayMappedTries v0.2.0 [d25df0c9] + Inflate v0.1.5 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.2 [692b3bcd] + JLLWrappers v1.7.1 [63c18a36] + KernelAbstractions v0.9.39 [ba0b0d4f] + Krylov v0.10.2 [45d422c2] + KrylovPreconditioners v0.3.6 [929cbde3] + LLVM v9.4.4 [da04e1cc] + MPI v0.20.23 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [2679e427] + Metis v1.5.0 [46d2c3a1] + MuladdMacro v0.2.4 ⌅ [9e8cae18] + Oceananigans v0.99.2 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [c2be9673] + OrthogonalSphericalShellGrids v0.2.2 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [94ee1d12] + Quaternions v0.7.6 [a3311ec8] + ReactantCore v0.1.16 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [7e506255] + ScopedValues v1.5.0 [d496a93d] + SeawaterPolynomials v0.3.10 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [09ab397b] + StructArrays v0.7.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [6aa5eb33] + TaylorSeries v0.20.9 [013be700] + UnsafeAtomics v0.3.0 [f5851436] + FFTW_jll v3.3.11+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [dad2f222] + LLVMExtra_jll v0.0.38+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [d00139f3] + METIS_jll v5.1.3+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 18.96s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 1051.7 ms ✓ Glob 4085.0 ms ✓ MacroTools 1130.4 ms ✓ SeawaterPolynomials 858.0 ms ✓ Reexport 1340.9 ms ✓ Statistics 864.2 ms ✓ DataAPI 1299.3 ms ✓ ConstructionBase 935.0 ms ✓ RealDot 818.0 ms ✓ DataValueInterfaces 969.7 ms ✓ StaticArraysCore 815.9 ms ✓ StatsAPI 1102.2 ms ✓ Requires 3168.2 ms ✓ UnsafeAtomics 1193.1 ms ✓ OrderedCollections 892.8 ms ✓ HashArrayMappedTries 1176.7 ms ✓ DocStringExtensions 811.9 ms ✓ CEnum 774.1 ms ✓ MuladdMacro 1218.6 ms ✓ AbstractFFTs 997.2 ms ✓ Inflate 1647.3 ms ✓ OffsetArrays 1464.6 ms ✓ ExpressionExplorer 710.3 ms ✓ IteratorInterfaceExtensions 903.0 ms ✓ ChunkCodecCore 1708.9 ms ✓ Crayons 13095.7 ms ✓ Krylov 6595.2 ms ✓ TaylorSeries 1041.6 ms ✓ Preferences 4060.4 ms ✓ PkgVersion 3232.7 ms ✓ SimpleTraits 1310.9 ms ✓ Statistics → SparseArraysExt 794.6 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1150.7 ms ✓ Quaternions 1437.1 ms ✓ Distances 904.8 ms ✓ Adapt 8645.1 ms ✓ FileIO 989.4 ms ✓ Atomix 3468.7 ms ✓ DataStructures 873.0 ms ✓ ScopedValues 1954.2 ms ✓ ReactantCore 755.4 ms ✓ TableTraits 976.3 ms ✓ ChunkCodecLibZlib 1209.1 ms ✓ ChunkCodecLibZstd 1347.9 ms ✓ JLLWrappers 1460.1 ms ✓ MPIPreferences 1042.6 ms ✓ PrecompileTools 1207.2 ms ✓ Distances → DistancesSparseArraysExt 1122.8 ms ✓ GPUArraysCore 1252.4 ms ✓ Adapt → AdaptSparseArraysExt 820.5 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1640.5 ms ✓ Tables 1311.1 ms ✓ METIS_jll 4803.2 ms ✓ IntelOpenMP_jll 5418.8 ms ✓ LLVMExtra_jll 1413.9 ms ✓ Xorg_libpciaccess_jll 1407.3 ms ✓ Libiconv_jll 5091.6 ms ✓ oneTBB_jll 1378.6 ms ✓ FFTW_jll 1233.4 ms ✓ MicrosoftMPI_jll 5080.2 ms ✓ MPItrampoline_jll 13100.8 ms ✓ StaticArrays 45761.8 ms ✓ JLD2 3107.4 ms ✓ CubedSphere 1599.6 ms ✓ StructArrays 2209.3 ms ✓ Metis 13942.4 ms ✓ LLVM 1450.2 ms ✓ XML2_jll  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 14428.1 ms ✓ MKL_jll 1426.8 ms ✓ StaticArrays → StaticArraysStatisticsExt 3807.3 ms ✓ ArnoldiMethod 1428.4 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 2826.3 ms ✓ TaylorSeries → TaylorSeriesSAExt 5077.7 ms ✓ Rotations 1360.4 ms ✓ Adapt → AdaptStaticArraysExt 6432.7 ms ✓ TaylorSeries → TaylorSeriesJLD2Ext 1284.5 ms ✓ StructArrays → StructArraysSparseArraysExt 825.0 ms ✓ StructArrays → StructArraysLinearAlgebraExt 800.5 ms ✓ StructArrays → StructArraysAdaptExt 1549.5 ms ✓ StructArrays → StructArraysStaticArraysExt 5607.7 ms ✓ UnsafeAtomics → UnsafeAtomicsLLVM 1470.4 ms ✓ Hwloc_jll 6159.9 ms ✓ FFTW 9488.3 ms ✓ Graphs 7089.4 ms ✓ KernelAbstractions 4204.0 ms ✓ MPICH_jll 3920.4 ms ✓ OpenMPI_jll 3242.7 ms ✓ Metis → MetisGraphs 1982.7 ms ✓ KernelAbstractions → LinearAlgebraExt 2894.7 ms ✓ KernelAbstractions → SparseArraysExt 2576.4 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 11169.1 ms ✓ MPI 13246.4 ms ✓ GPUArrays 7219.7 ms ✓ KrylovPreconditioners 7633.5 ms ✓ GPUArrays → JLD2Ext WARNING: Constructor for type "FieldBoundaryConditions" was extended in `MultiRegion` without explicit qualification or import.  NOTE: Assumed "FieldBoundaryConditions" refers to `BoundaryConditions.FieldBoundaryConditions`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function FieldBoundaryConditions end`.  Hint: To silence the warning, qualify `FieldBoundaryConditions` as `BoundaryConditions.FieldBoundaryConditions` in the method signature or explicitly `import BoundaryConditions: FieldBoundaryConditions`. 43641.8 ms ✓ Oceananigans ┌ Warning: You are using Julia v1.11 or later!" │ Oceananigans is currently tested on Julia v1.10." │ If you find issues with Julia v1.11 or later," │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new └ @ Oceananigans ~/.julia/packages/Oceananigans/yZVc9/src/Oceananigans.jl:125 WARNING: Imported binding BoundaryConditions.apply_y_north_bc! was undeclared at import time during import to OrthogonalSphericalShellGrids. ERROR: LoadError: invalid method definition in OrthogonalSphericalShellGrids: exported function BoundaryConditions.apply_y_north_bc! does not exist Stacktrace:  [1] top-level scope  @ ~/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/zipper_boundary_condition.jl:64  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/OrthogonalSphericalShellGrids.jl:49  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [9] include_string  @ ./loading.jl:3004 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/zipper_boundary_condition.jl:64 in expression starting at /home/pkgeval/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/OrthogonalSphericalShellGrids.jl:1 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ ┌ Oceananigans │ WARNING: Constructor for type "FieldBoundaryConditions" was extended in `MultiRegion` without explicit qualification or import. │ NOTE: Assumed "FieldBoundaryConditions" refers to `BoundaryConditions.FieldBoundaryConditions`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function FieldBoundaryConditions end`. │ Hint: To silence the warning, qualify `FieldBoundaryConditions` as `BoundaryConditions.FieldBoundaryConditions` in the method signature or explicitly `import BoundaryConditions: FieldBoundaryConditions`. └ Precompilation completed after 388.37s ################################################################################ # Loading # Loading OrthogonalSphericalShellGrids... ┌ Warning: You are using Julia v1.11 or later!" │ Oceananigans is currently tested on Julia v1.10." │ If you find issues with Julia v1.11 or later," │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new └ @ Oceananigans ~/.julia/packages/Oceananigans/yZVc9/src/Oceananigans.jl:125 WARNING: Imported binding BoundaryConditions.apply_y_north_bc! was undeclared at import time during import to OrthogonalSphericalShellGrids. ERROR: LoadError: invalid method definition in OrthogonalSphericalShellGrids: exported function BoundaryConditions.apply_y_north_bc! does not exist Stacktrace:  [1] top-level scope  @ ~/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/zipper_boundary_condition.jl:64  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/OrthogonalSphericalShellGrids.jl:49  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [9] include_string  @ ./loading.jl:3004 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/zipper_boundary_condition.jl:64 in expression starting at /home/pkgeval/.julia/packages/OrthogonalSphericalShellGrids/EBVHl/src/OrthogonalSphericalShellGrids.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ OrthogonalSphericalShellGrids │ [Output was shown above] └ ERROR: The following 1 package failed to precompile: OrthogonalSphericalShellGrids Failed to precompile OrthogonalSphericalShellGrids [c2be9673-fb75-4747-82dc-aa2bb9f4aed0] to "/home/pkgeval/.julia/compiled/v1.14/OrthogonalSphericalShellGrids/jl_Hgj7e4" (ProcessExited(1)). Loading failed after 19.2s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using OrthogonalSphericalShellGrids'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [7] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 485.84s: package fails to precompile