Package evaluation to load OrdinalGWAS on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T13:18:51.445 ################################################################################ # Set-up # Set-up completed after 0.11s ################################################################################ # Installation # Installing OrdinalGWAS... Resolving package versions... Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed Glob ───────────────────────────── v1.3.1 Installed CommonWorldInvalidations ───────── v1.0.0 Installed MUMPS_seq_jll ──────────────────── v500.800.100+0 Installed InlineStrings ──────────────────── v1.4.5 Installed SIMDTypes ──────────────────────── v0.1.0 Installed OrderedCollections ─────────────── v1.8.1 Installed HypothesisTests ────────────────── v0.11.6 Installed Xorg_libpciaccess_jll ──────────── v0.18.1+0 Installed CpuId ──────────────────────────── v0.3.1 Installed Ipopt_jll ──────────────────────── v300.1400.1900+0 Installed SentinelArrays ─────────────────── v1.4.8 Installed NaNMath ────────────────────────── v1.1.3 Installed StaticArrayInterface ───────────── v1.8.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed FileIO ─────────────────────────── v1.17.1 Installed Reexport ───────────────────────── v1.2.2 Installed Missings ───────────────────────── v1.2.0 Installed Tables ─────────────────────────── v1.12.1 Installed DBInterface ────────────────────── v2.6.1 Installed InverseFunctions ───────────────── v0.1.17 Installed Preferences ────────────────────── v1.5.0 Installed TZJData ────────────────────────── v1.5.0+2025b Installed TableTraits ────────────────────── v1.0.1 Installed Static ─────────────────────────── v1.3.1 Installed LaTeXStrings ───────────────────── v1.4.0 Installed Crayons ────────────────────────── v4.1.1 Installed DataStructures ─────────────────── v0.19.3 Installed UnPack ─────────────────────────── v1.0.2 Installed SortingAlgorithms ──────────────── v1.2.2 Installed CodecZstd ──────────────────────── v0.8.6 Installed DiffResults ────────────────────── v1.1.0 Installed MacroTools ─────────────────────── v0.5.16 Installed ManualMemory ───────────────────── v0.1.8 Installed DelimitedFiles ─────────────────── v1.9.1 Installed FillArrays ─────────────────────── v1.14.0 Installed CodecZlib ──────────────────────── v0.7.8 Installed VCFTools ───────────────────────── v0.2.10 Installed ExprTools ──────────────────────── v0.1.10 Installed VectorizationBase ──────────────── v0.21.72 Installed StatsBase ──────────────────────── v0.34.7 Installed TimeZones ──────────────────────── v1.22.1 Installed DataValueInterfaces ────────────── v1.0.0 Installed HostCPUFeatures ────────────────── v0.1.17 Installed ArrayInterface ─────────────────── v7.22.0 Installed LayoutPointers ─────────────────── v0.1.17 Installed StructUtils ────────────────────── v2.5.1 Installed IrrationalConstants ────────────── v0.2.6 Installed CommonSubexpressions ───────────── v0.3.1 Installed Roots ──────────────────────────── v2.2.10 Installed Hwloc_jll ──────────────────────── v2.12.2+0 Installed SPRAL_jll ──────────────────────── v2025.5.20+0 Installed PooledArrays ───────────────────── v1.4.3 Installed PDMats ─────────────────────────── v0.11.36 Installed Scratch ────────────────────────── v1.3.0 Installed BenchmarkTools ─────────────────── v1.6.3 Installed BufferedStreams ────────────────── v1.2.2 Installed CodecXz ────────────────────────── v0.7.4 Installed WorkerUtilities ────────────────── v1.6.1 Installed CompositionsBase ───────────────── v0.1.2 Installed DocStringExtensions ────────────── v0.9.5 Installed CommonSolve ────────────────────── v0.2.4 Installed SQLite ─────────────────────────── v1.6.1 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed SLEEFPirates ───────────────────── v0.6.43 Installed StatsModels ────────────────────── v0.7.7 Installed ForwardDiff ────────────────────── v1.2.2 Installed AliasTables ────────────────────── v1.1.3 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed ShiftedArrays ──────────────────── v2.0.0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed Combinatorics ──────────────────── v1.0.3 Installed DataAPI ────────────────────────── v1.16.0 Installed SIMD ───────────────────────────── v3.7.2 Installed OrdinalGWAS ────────────────────── v0.7.2 Installed InvertedIndices ────────────────── v1.3.1 Installed StaticArraysCore ───────────────── v1.4.4 Installed SciMLPublic ────────────────────── v1.0.0 Installed StringManipulation ─────────────── v0.4.1 Installed Requires ───────────────────────── v1.3.1 Installed MathOptInterface ───────────────── v1.46.0 Installed LogExpFunctions ────────────────── v0.3.29 Installed PrettyTables ───────────────────── v3.1.0 Installed DiffRules ──────────────────────── v1.15.1 Installed OpenBLAS32_jll ─────────────────── v0.3.29+0 Installed Parsers ────────────────────────── v2.8.3 Installed Rmath ──────────────────────────── v0.9.0 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed BioGenerics ────────────────────── v0.1.5 Installed JSON ───────────────────────────── v1.2.0 Installed StatsFuns ──────────────────────── v1.5.2 Installed Distributions ──────────────────── v0.25.122 Installed WeakRefStrings ─────────────────── v1.4.2 Installed RData ──────────────────────────── v0.8.3 Installed XZ_jll ─────────────────────────── v5.8.1+0 Installed JLLWrappers ────────────────────── v1.7.1 Installed MutableArithmetics ─────────────── v1.6.7 Installed DataFrames ─────────────────────── v1.8.1 Installed StructTypes ────────────────────── v1.11.0 Installed NLopt ──────────────────────────── v0.6.5 Installed BGZFStreams ────────────────────── v0.3.2 Installed VariantCallFormat ──────────────── v0.5.9 Installed ThreadingUtilities ─────────────── v0.5.5 Installed FilePathsBase ──────────────────── v0.9.24 Installed CategoricalArrays ──────────────── v0.10.7 Installed Accessors ──────────────────────── v0.1.42 Installed OrdinalMultinomialModels ───────── v0.4.5 Installed GLM ────────────────────────────── v1.9.0 Installed Adapt ──────────────────────────── v4.4.0 Installed HypergeometricFunctions ────────── v0.3.28 Installed ConstructionBase ───────────────── v1.6.0 Installed TranscodingStreams ─────────────── v0.9.13 Installed Compat ─────────────────────────── v4.18.1 Installed Statistics ─────────────────────── v1.11.1 Installed LoopVectorization ──────────────── v0.12.173 Installed StatsAPI ───────────────────────── v1.7.1 Installed ProgressMeter ──────────────────── v1.11.0 Installed OffsetArrays ───────────────────── v1.17.0 Installed PrecompileTools ────────────────── v1.3.3 Installed ASL_jll ────────────────────────── v0.1.3+0 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed RDatasets ──────────────────────── v0.7.7 Installed CPUSummary ─────────────────────── v0.2.7 Installed JSON3 ──────────────────────────── v1.14.3 Installed IfElse ─────────────────────────── v0.1.1 Installed PtrArrays ──────────────────────── v1.3.0 Installed XML2_jll ───────────────────────── v2.13.9+0 Installed SpecialFunctions ───────────────── v2.6.1 Installed Ipopt ──────────────────────────── v1.12.1 Installed SQLite_jll ─────────────────────── v3.48.0+0 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed METIS_jll ──────────────────────── v5.1.3+0 Installed Automa ─────────────────────────── v1.1.0 Installed PolyesterWeave ─────────────────── v0.2.2 Installed Mocking ────────────────────────── v0.8.1 Installed MathProgBase ───────────────────── v0.7.8 Installed NLopt_jll ──────────────────────── v2.10.0+0 Installed SnpArrays ──────────────────────── v0.3.22 Installed CSV ────────────────────────────── v0.10.15 Installed BGEN ───────────────────────────── v0.1.17 Installing 17 artifacts Installed artifact Rmath 121.9 KiB Installed artifact Bzip2 503.5 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact NLopt 322.7 KiB Installed artifact Ipopt 1.3 MiB Installed artifact METIS 1.1 MiB Installed artifact Libiconv 1.9 MiB Installed artifact ASL 276.3 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact Hwloc 3.5 MiB Installed artifact SQLite 5.0 MiB Installed artifact tzjdata 112.5 KiB Installed artifact SPRAL 691.8 KiB Installed artifact XZ 1.5 MiB Installed artifact XML2 2.5 MiB Installed artifact OpenBLAS32 10.0 MiB Installed artifact MUMPS_seq 8.6 MiB Updating `~/.julia/environments/v1.14/Project.toml` [00428148] + OrdinalGWAS v0.7.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 ⌅ [6db4b851] + BGEN v0.1.17 [28d598bf] + BGZFStreams v0.3.2 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 ⌅ [324d7699] + CategoricalArrays v0.10.7 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a10d1c49] + DBInterface v2.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [f6369f11] + ForwardDiff v1.2.2 [38e38edf] + GLM v1.9.0 [c27321d9] + Glob v1.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.6 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [b6b21f68] + Ipopt v1.12.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.2.0 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.173 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.46.0 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [78c3b35d] + Mocking v0.8.1 [d8a4904e] + MutableArithmetics v1.6.7 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [00428148] + OrdinalGWAS v0.7.2 [b51826c6] + OrdinalMultinomialModels v0.4.5 [90014a1f] + PDMats v0.11.36 [69de0a69] + Parsers v2.8.3 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 ⌅ [df47a6cb] + RData v0.8.3 [ce6b1742] + RDatasets v0.7.7 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [0aa819cd] + SQLite v1.6.1 [431bcebd] + SciMLPublic v1.0.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.5.1 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [f269a46b] + TimeZones v1.22.1 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.9 [3d5dd08c] + VectorizationBase v0.21.72 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [9cc047cb] + Ipopt_jll v300.1400.1900+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [d00139f3] + METIS_jll v5.1.3+0 [d7ed1dd3] + MUMPS_seq_jll v500.800.100+0 [079eb43e] + NLopt_jll v2.10.0+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [319450e9] + SPRAL_jll v2025.5.20+0 [76ed43ae] + SQLite_jll v3.48.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 20.46s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 4254.5 ms ✓ MacroTools 1622.3 ms ✓ InlineStrings 786.0 ms ✓ Reexport 1179.1 ms ✓ ConstructionBase 1883.5 ms ✓ IrrationalConstants 774.3 ms ✓ DataValueInterfaces 809.9 ms ✓ StatsAPI 2001.8 ms ✓ Combinatorics 788.6 ms ✓ CommonSolve 848.0 ms ✓ LaTeXStrings 938.0 ms ✓ Glob 1098.8 ms ✓ Statistics 960.9 ms ✓ StaticArraysCore 787.6 ms ✓ IfElse 802.6 ms ✓ PtrArrays 924.4 ms ✓ ManualMemory 861.5 ms ✓ DataAPI 883.6 ms ✓ SciMLPublic 798.1 ms ✓ CommonWorldInvalidations 881.3 ms ✓ InvertedIndices 948.5 ms ✓ InverseFunctions 847.9 ms ✓ CompositionsBase 868.0 ms ✓ ShiftedArrays 991.2 ms ✓ WorkerUtilities 960.0 ms ✓ TZJData 2155.1 ms ✓ FillArrays 892.7 ms ✓ ExprTools 824.5 ms ✓ UnPack 813.8 ms ✓ DBInterface 1266.8 ms ✓ OrderedCollections 1115.9 ms ✓ DocStringExtensions 1649.3 ms ✓ OffsetArrays 1019.5 ms ✓ BufferedStreams 782.6 ms ✓ SIMDTypes 779.9 ms ✓ IteratorInterfaceExtensions 1868.8 ms ✓ Crayons 1015.4 ms ✓ DelimitedFiles 1046.0 ms ✓ NaNMath 1180.1 ms ✓ Requires 1264.6 ms ✓ SuiteSparse 1820.6 ms ✓ CpuId 2199.7 ms ✓ MathProgBase 931.4 ms ✓ Scratch 2846.6 ms ✓ SentinelArrays 1623.7 ms ✓ StructTypes 1476.6 ms ✓ StructUtils 1821.7 ms ✓ ProgressMeter 1165.9 ms ✓ Compat 1147.0 ms ✓ Preferences 2318.5 ms ✓ TranscodingStreams 11377.8 ms ✓ MutableArithmetics 1723.3 ms ✓ CommonSubexpressions 806.4 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1295.7 ms ✓ Statistics → SparseArraysExt 870.5 ms ✓ DiffResults 991.2 ms ✓ AliasTables 1753.6 ms ✓ ThreadingUtilities 1003.5 ms ✓ Missings 1120.2 ms ✓ PooledArrays 890.1 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1649.1 ms ✓ InverseFunctions → InverseFunctionsTestExt 811.1 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1490.9 ms ✓ FillArrays → FillArraysSparseArraysExt 934.7 ms ✓ FillArrays → FillArraysStatisticsExt 3342.4 ms ✓ DataStructures 1373.2 ms ✓ LogExpFunctions 799.8 ms ✓ TableTraits 950.7 ms ✓ Adapt 9053.9 ms ✓ FileIO 1763.7 ms ✓ PDMats 835.6 ms ✓ Compat → CompatLinearAlgebraExt 924.3 ms ✓ PrecompileTools 1240.2 ms ✓ JLLWrappers 1670.5 ms ✓ BioGenerics 2501.5 ms ✓ CodecZstd 1660.6 ms ✓ CodecZlib 7177.8 ms ✓ CategoricalArrays 5019.1 ms ✓ Accessors 1057.6 ms ✓ SortingAlgorithms 2263.3 ms ✓ QuadGK 818.6 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1759.7 ms ✓ Tables 1163.0 ms ✓ ArrayInterface 1289.6 ms ✓ Adapt → AdaptSparseArraysExt 835.2 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1471.5 ms ✓ FillArrays → FillArraysPDMatsExt 2143.2 ms ✓ FilePathsBase 1188.3 ms ✓ Mocking 3137.9 ms ✓ StringManipulation 16099.2 ms ✓ SIMD 16015.5 ms ✓ Parsers 5237.0 ms ✓ Static 1342.9 ms ✓ OpenBLAS32_jll 1332.4 ms ✓ Bzip2_jll 1421.0 ms ✓ XZ_jll 1838.0 ms ✓ NLopt_jll 1866.2 ms ✓ Rmath_jll 1662.3 ms ✓ OpenSpecFun_jll 1606.1 ms ✓ ASL_jll 1362.3 ms ✓ SQLite_jll 1353.2 ms ✓ METIS_jll 1395.5 ms ✓ Xorg_libpciaccess_jll 1378.1 ms ✓ Libiconv_jll 1781.7 ms ✓ BGZFStreams 1997.4 ms ✓ Accessors → TestExt 2527.8 ms ✓ Accessors → LinearAlgebraExt 4414.3 ms ✓ StatsBase 933.2 ms ✓ StructUtils → StructUtilsTablesExt 779.8 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1245.2 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2525.8 ms ✓ FilePathsBase → FilePathsBaseTestExt 927.1 ms ✓ FilePathsBase → FilePathsBaseMmapExt 5613.6 ms ✓ TimeZones 38343.4 ms ✓ PrettyTables 22108.5 ms ✓ Automa 13798.8 ms ✓ JSON3 7408.5 ms ✓ JSON 991.0 ms ✓ InlineStrings → ParsersExt 953.3 ms ✓ BitTwiddlingConvenienceFunctions 2398.5 ms ✓ CPUSummary 10647.1 ms ✓ StaticArrayInterface 1773.5 ms ✓ CodecBzip2 1575.6 ms ✓ CodecXz 1392.9 ms ✓ Rmath 4667.9 ms ✓ SpecialFunctions 1455.5 ms ✓ MUMPS_seq_jll 1483.8 ms ✓ XML2_jll 6605.8 ms ✓ Roots 1431.7 ms ✓ PDMats → StatsBaseExt 81724.5 ms ✓ DataFrames [ Info: Compiling VCF parser... 18118.4 ms ✓ VariantCallFormat 3066.8 ms ✓ BenchmarkTools 2544.8 ms ✓ WeakRefStrings 1530.8 ms ✓ HostCPUFeatures 1739.2 ms ✓ PolyesterWeave 1091.1 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1129.4 ms ✓ CloseOpenIntervals 1284.4 ms ✓ LayoutPointers 2502.5 ms ✓ HypergeometricFunctions 1310.6 ms ✓ DiffRules 1492.9 ms ✓ Hwloc_jll 25916.0 ms ✓ RData 27668.8 ms ✓ CSV 4059.4 ms ✓ SQLite 15035.0 ms ✓ VectorizationBase 2940.5 ms ✓ StatsFuns 6733.4 ms ✓ ForwardDiff 1507.0 ms ✓ SPRAL_jll 21966.3 ms ✓ RDatasets 8081.3 ms ✓ BGEN 4343.1 ms ✓ SLEEFPirates 1006.0 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 4957.6 ms ✓ StatsModels 9057.5 ms ✓ Distributions 1616.3 ms ✓ Roots → RootsForwardDiffExt 75870.3 ms ✓ MathOptInterface 1560.1 ms ✓ Ipopt_jll 39967.6 ms ✓ LoopVectorization 5489.5 ms ✓ GLM 3710.9 ms ✓ Distributions → DistributionsTestExt 4295.2 ms ✓ HypothesisTests 7951.8 ms ✓ NLopt 1219.0 ms ✓ Ipopt 3372.6 ms ✓ LoopVectorization → SpecialFunctionsExt 7868.7 ms ✓ VCFTools 43989.9 ms ✓ Ipopt → IpoptMathOptInterfaceExt ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [7] include_string  @ ./loading.jl:3004 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ Precompilation completed after 821.21s ################################################################################ # Loading # Loading OrdinalGWAS... ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [7] include_string  @ ./loading.jl:3004 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [7] include_string  @ ./loading.jl:3004 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ SnpArrays │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.14/SnpArrays/jl_ool3Hb" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:3 Loading failed after 92.49s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using OrdinalGWAS'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [7] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 960.87s: package fails to precompile