Package evaluation to load MolecularTrajectories on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T07:15:31.952


################################################################################
# Set-up
#


Set-up completed after 0.12s


################################################################################
# Installation
#

Installing MolecularTrajectories...
   Resolving package versions...
   Installed Statistics ──────────── v1.11.1
   Installed MolecularBoxes ──────── v1.0.1
   Installed StaticArrays ────────── v0.12.6
   Installed MolecularTrajectories ─ v2.1.0
    Updating `~/.julia/environments/v1.14/Project.toml`
  [c3751834] + MolecularTrajectories v2.1.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [aea3f91d] + MolecularBoxes v1.0.1
  [c3751834] + MolecularTrajectories v2.1.0
⌅ [90137ffa] + StaticArrays v0.12.6
  [10745b16] + Statistics v1.11.1
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [8dfed614] + Test v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 3.6s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   1114.3 ms  ✓ Statistics
WARNING: Imported binding Base.@_pure_meta was undeclared at import time during import to StaticArrays.
WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import.
  NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Tuple end`.
  Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`.
WARNING: Constructor for type "Array" was extended in `StaticArrays` without explicit qualification or import.
  NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Array end`.
  Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`.
   5464.0 ms  ✓ StaticArrays
    952.2 ms  ✓ MolecularBoxes
ERROR: LoadError: UndefVarError: `Printf` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:62
  [2] _eval_using
    @ ./module.jl:137 [inlined]
  [3] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
  [4] top-level scope
    @ ~/.julia/packages/MolecularTrajectories/7h18N/src/Gromacs.jl:5
  [5] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [6] top-level scope
    @ ~/.julia/packages/MolecularTrajectories/7h18N/src/MolecularTrajectories.jl:29
  [7] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
  [9] top-level scope
    @ stdin:5
 [10] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [12] include_string
    @ ./loading.jl:3004 [inlined]
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/MolecularTrajectories/7h18N/src/Gromacs.jl:5
in expression starting at /home/pkgeval/.julia/packages/MolecularTrajectories/7h18N/src/MolecularTrajectories.jl:2
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ StaticArrays
│  WARNING: Imported binding Base.@_pure_meta was undeclared at import time during import to StaticArrays.
│  WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import.
│    NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Tuple end`.
│    Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`.
│  WARNING: Constructor for type "Array" was extended in `StaticArrays` without explicit qualification or import.
│    NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Array end`.
│    Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`.
└  

Precompilation completed after 19.88s


################################################################################
# Loading
#

Loading MolecularTrajectories...
ERROR: LoadError: UndefVarError: `Printf` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:62
  [2] _eval_using
    @ ./module.jl:137 [inlined]
  [3] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
  [4] top-level scope
    @ ~/.julia/packages/MolecularTrajectories/7h18N/src/Gromacs.jl:5
  [5] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [6] top-level scope
    @ ~/.julia/packages/MolecularTrajectories/7h18N/src/MolecularTrajectories.jl:29
  [7] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
  [9] top-level scope
    @ stdin:5
 [10] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [12] include_string
    @ ./loading.jl:3004 [inlined]
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/MolecularTrajectories/7h18N/src/Gromacs.jl:5
in expression starting at /home/pkgeval/.julia/packages/MolecularTrajectories/7h18N/src/MolecularTrajectories.jl:2
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ MolecularTrajectories
│  [Output was shown above]
└  
ERROR: The following 1 package failed to precompile:

MolecularTrajectories 
Failed to precompile MolecularTrajectories [c3751834-3f3f-50ce-917e-73bb091d662c] to "/home/pkgeval/.julia/compiled/v1.14/MolecularTrajectories/jl_AM2y6F" (ProcessExited(1)).


Loading failed after 6.59s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using MolecularTrajectories'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 45.67s: package fails to precompile