Package evaluation to load Minc2 on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T09:52:53.580


################################################################################
# Set-up
#


Set-up completed after 0.1s


################################################################################
# Installation
#

Installing Minc2...
   Resolving package versions...
   Installed Lz4_jll ─────────────── v1.10.1+0
   Installed Bzip2_jll ───────────── v1.0.9+0
   Installed libaec_jll ──────────── v1.1.4+0
   Installed NetCDF_jll ──────────── v401.900.300+0
   Installed Adapt ───────────────── v4.4.0
   Installed Quaternions ─────────── v0.7.6
   Installed DataStructures ──────── v0.19.3
   Installed MPICH_jll ───────────── v4.3.2+0
   Installed AliasTables ─────────── v1.1.3
   Installed TranscodingStreams ──── v0.9.13
   Installed MicrosoftMPI_jll ────── v10.1.4+3
   Installed OrderedCollections ──── v1.8.1
   Installed CodecZlib ───────────── v0.7.8
   Installed CBinding ────────────── v1.1.0
   Installed StatsBase ───────────── v0.34.7
   Installed DataAPI ─────────────── v1.16.0
   Installed Compat ──────────────── v4.18.1
   Installed Xorg_libpciaccess_jll ─ v0.18.1+0
   Installed StatsAPI ────────────── v1.7.1
   Installed Statistics ──────────── v1.11.1
   Installed OffsetArrays ────────── v1.17.0
   Installed PrecompileTools ─────── v1.3.3
   Installed StaticArraysCore ────── v1.4.4
   Installed RealDot ─────────────── v0.1.0
   Installed IrrationalConstants ─── v0.2.6
   Installed Blosc_jll ───────────── v1.21.7+0
   Installed Ratios ──────────────── v0.4.5
   Installed StaticArrays ────────── v1.9.15
   Installed ChainRulesCore ──────── v1.26.0
   Installed AxisAlgorithms ──────── v1.1.0
   Installed libzip_jll ──────────── v1.11.3+0
   Installed Clang_jll ───────────── v18.1.7+4
   Installed Minc2 ───────────────── v0.1.9
   Installed Requires ────────────── v1.3.1
   Installed LogExpFunctions ─────── v0.3.29
   Installed HDF5_jll ────────────── v1.14.6+0
   Installed OpenMPI_jll ─────────── v5.0.8+0
   Installed Hwloc_jll ───────────── v2.12.2+0
   Installed Interpolations ──────── v0.16.2
   Installed XML2_jll ────────────── v2.13.9+0
   Installed WoodburyMatrices ────── v1.0.0
   Installed PtrArrays ───────────── v1.3.0
   Installed libminc_jll ─────────── v2.4.7+0
   Installed Scratch ─────────────── v1.3.0
   Installed NIfTI ───────────────── v0.6.1
   Installed Preferences ─────────── v1.5.0
   Installed Missings ────────────── v1.2.0
   Installed Libiconv_jll ────────── v1.18.0+0
   Installed JLLWrappers ─────────── v1.7.1
   Installed XZ_jll ──────────────── v5.8.1+0
   Installed MappedArrays ────────── v0.4.2
   Installed Rotations ───────────── v1.7.1
   Installed MPIPreferences ──────── v0.1.11
   Installed SortingAlgorithms ───── v1.2.2
   Installed DocStringExtensions ─── v0.9.5
   Installed MPItrampoline_jll ───── v5.5.4+0
  Installing 14 artifacts
   Installed artifact Bzip2             503.5 KiB
   Installed artifact Blosc             44.2 KiB
   Installed artifact libminc           412.8 KiB
   Installed artifact Hwloc             3.5 MiB
   Installed artifact XML2              2.5 MiB
   Installed artifact Xorg_libpciaccess 24.8 KiB
   Installed artifact libzip            177.6 KiB
   Installed artifact MPICH             3.3 MiB
   Installed artifact NetCDF            936.0 KiB
   Installed artifact libaec            49.6 KiB
   Installed artifact Libiconv          1.9 MiB
   Installed artifact XZ                1.5 MiB
   Installed artifact Lz4               239.7 KiB
   Installed artifact HDF5              5.7 MiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [8e6f2f06] + Minc2 v0.1.9
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [13072b0f] + AxisAlgorithms v1.1.0
  [d43a6710] + CBinding v1.1.0
  [d360d2e6] + ChainRulesCore v1.26.0
  [944b1d66] + CodecZlib v0.7.8
  [34da2185] + Compat v4.18.1
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.3
  [ffbed154] + DocStringExtensions v0.9.5
  [a98d9a8b] + Interpolations v0.16.2
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [3da0fdf6] + MPIPreferences v0.1.11
  [dbb5928d] + MappedArrays v0.4.2
  [8e6f2f06] + Minc2 v0.1.9
  [e1d29d7a] + Missings v1.2.0
  [a3a9e032] + NIfTI v0.6.1
  [6fe1bfb0] + OffsetArrays v1.17.0
  [bac558e1] + OrderedCollections v1.8.1
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [43287f4e] + PtrArrays v1.3.0
  [94ee1d12] + Quaternions v0.7.6
  [c84ed2f1] + Ratios v0.4.5
  [c1ae055f] + RealDot v0.1.0
  [ae029012] + Requires v1.3.1
  [6038ab10] + Rotations v1.7.1
  [6c6a2e73] + Scratch v1.3.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.7
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
  [efce3f68] + WoodburyMatrices v1.0.0
  [0b7ba130] + Blosc_jll v1.21.7+0
  [6e34b625] + Bzip2_jll v1.0.9+0
⌅ [0ee61d77] + Clang_jll v18.1.7+4
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.2+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [5ced341a] + Lz4_jll v1.10.1+0
  [7cb0a576] + MPICH_jll v4.3.2+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [7243133f] + NetCDF_jll v401.900.300+0
  [fe0851c0] + OpenMPI_jll v5.0.8+0
⌅ [02c8fc9c] + XML2_jll v2.13.9+0
  [ffd25f8a] + XZ_jll v5.8.1+0
  [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] + libaec_jll v1.1.4+0
  [dce2f2bf] + libminc_jll v2.4.7+0
  [337d8026] + libzip_jll v1.11.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.9.9
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.67.1+0
  [3f19e933] + p7zip_jll v17.6.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 14.51s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   1070.9 ms  ✓ MappedArrays
    849.0 ms  ✓ Statistics
    613.2 ms  ✓ DataAPI
   1437.9 ms  ✓ IrrationalConstants
    549.5 ms  ✓ RealDot
    715.8 ms  ✓ StaticArraysCore
    629.7 ms  ✓ StatsAPI
    825.1 ms  ✓ Requires
    903.3 ms  ✓ OrderedCollections
    770.9 ms  ✓ DocStringExtensions
   1350.5 ms  ✓ OffsetArrays
   1071.6 ms  ✓ WoodburyMatrices
    758.5 ms  ✓ PtrArrays
    753.5 ms  ✓ Scratch
    797.9 ms  ✓ Compat
    752.2 ms  ✓ Preferences
   1428.7 ms  ✓ TranscodingStreams
    869.4 ms  ✓ Statistics → SparseArraysExt
    669.2 ms  ✓ Missings
    713.0 ms  ✓ Quaternions
    613.8 ms  ✓ Adapt
    560.4 ms  ✓ Ratios
   2554.5 ms  ✓ DataStructures
    938.7 ms  ✓ LogExpFunctions
    928.4 ms  ✓ AxisAlgorithms
    667.3 ms  ✓ AliasTables
    575.9 ms  ✓ Compat → CompatLinearAlgebraExt
    813.0 ms  ✓ JLLWrappers
    979.6 ms  ✓ MPIPreferences
    677.3 ms  ✓ PrecompileTools
   1126.7 ms  ✓ CodecZlib
    880.1 ms  ✓ Adapt → AdaptSparseArraysExt
    605.4 ms  ✓ OffsetArrays → OffsetArraysAdaptExt
    883.8 ms  ✓ SortingAlgorithms
   1817.7 ms  ✓ ChainRulesCore
   1026.4 ms  ✓ libaec_jll
    980.4 ms  ✓ Xorg_libpciaccess_jll
    948.1 ms  ✓ Bzip2_jll
   1018.8 ms  ✓ Libiconv_jll
   1056.6 ms  ✓ Lz4_jll
    987.0 ms  ✓ XZ_jll
    882.9 ms  ✓ Clang_jll
    809.2 ms  ✓ MicrosoftMPI_jll
   2570.9 ms  ✓ MPItrampoline_jll
   8748.0 ms  ✓ StaticArrays
   1809.3 ms  ✓ NIfTI
   3263.8 ms  ✓ StatsBase
   1105.9 ms  ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt
   2563.4 ms  ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt
   1318.1 ms  ✓ XML2_jll
   1228.2 ms  ✓ Blosc_jll
   1221.7 ms  ✓ libzip_jll
ERROR: LoadError: UndefVarError: `libclang_path` not defined in `Clang_jll`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty(x::Module, f::Symbol)
    @ Base ./Base_compiler.jl:50
  [2] top-level scope
    @ ~/.julia/packages/CBinding/nBAFM/src/libclang.jl:21
  [3] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [4] top-level scope
    @ ~/.julia/packages/CBinding/nBAFM/src/CBinding.jl:112
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
  [7] top-level scope
    @ stdin:5
  [8] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [10] include_string
    @ ./loading.jl:3004 [inlined]
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [12] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/CBinding/nBAFM/src/libclang.jl:17
in expression starting at /home/pkgeval/.julia/packages/CBinding/nBAFM/src/CBinding.jl:1
in expression starting at stdin:5

Precompilation completed after 72.56s


################################################################################
# Loading
#

Loading Minc2...
ERROR: LoadError: UndefVarError: `libclang_path` not defined in `Clang_jll`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty(x::Module, f::Symbol)
    @ Base ./Base_compiler.jl:50
  [2] top-level scope
    @ ~/.julia/packages/CBinding/nBAFM/src/libclang.jl:21
  [3] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [4] top-level scope
    @ ~/.julia/packages/CBinding/nBAFM/src/CBinding.jl:112
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
  [7] top-level scope
    @ stdin:5
  [8] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [10] include_string
    @ ./loading.jl:3004 [inlined]
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [12] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/CBinding/nBAFM/src/libclang.jl:17
in expression starting at /home/pkgeval/.julia/packages/CBinding/nBAFM/src/CBinding.jl:1
in expression starting at stdin:5
ERROR: LoadError: UndefVarError: `libclang_path` not defined in `Clang_jll`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty(x::Module, f::Symbol)
    @ Base ./Base_compiler.jl:50
  [2] top-level scope
    @ ~/.julia/packages/CBinding/nBAFM/src/libclang.jl:21
  [3] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [4] top-level scope
    @ ~/.julia/packages/CBinding/nBAFM/src/CBinding.jl:112
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
  [7] top-level scope
    @ stdin:5
  [8] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [10] include_string
    @ ./loading.jl:3004 [inlined]
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [12] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/CBinding/nBAFM/src/libclang.jl:17
in expression starting at /home/pkgeval/.julia/packages/CBinding/nBAFM/src/CBinding.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ CBinding
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

CBinding 
Failed to precompile CBinding [d43a6710-96b8-4a2d-833c-c424785e5374] to "/home/pkgeval/.julia/compiled/v1.14/CBinding/jl_1cLeO3" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/Minc2/NU5hz/src/minc2_simple.jl:3
in expression starting at /home/pkgeval/.julia/packages/Minc2/NU5hz/src/Minc2.jl:1

Loading failed after 46.82s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using Minc2'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 164.23s: package fails to precompile