Package evaluation to load MicroscopyTools on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T08:09:25.920


################################################################################
# Set-up
#


Set-up completed after 0.12s


################################################################################
# Installation
#

Installing MicroscopyTools...
   Resolving package versions...
   Installed MKL_jll ───────────── v2025.2.0+0
   Installed oneTBB_jll ────────── v2022.0.0+1
   Installed IntelOpenMP_jll ───── v2025.2.0+0
   Installed Compat ────────────── v4.18.1
   Installed PaddedViews ───────── v0.5.12
   Installed Statistics ────────── v1.11.1
   Installed OffsetArrays ──────── v1.17.0
   Installed NDTools ───────────── v0.7.1
   Installed IrrationalConstants ─ v0.2.6
   Installed AbstractFFTs ──────── v1.5.0
   Installed NaNMath ───────────── v1.1.3
   Installed Requires ──────────── v1.3.1
   Installed OpenSpecFun_jll ───── v0.5.6+0
   Installed ColorTypes ────────── v0.11.5
   Installed ChainRulesCore ────── v1.26.0
   Installed Tullio ────────────── v0.3.8
   Installed DiffRules ─────────── v1.15.1
   Installed LogExpFunctions ───── v0.3.29
   Installed Reexport ──────────── v1.2.2
   Installed FixedPointNumbers ─── v0.8.5
   Installed FFTW ──────────────── v1.10.0
   Installed SpecialFunctions ──── v2.6.1
   Installed Preferences ───────── v1.5.0
   Installed FFTW_jll ──────────── v3.3.11+0
   Installed JLLWrappers ───────── v1.7.1
   Installed IndexFunArrays ────── v0.2.7
   Installed DocStringExtensions ─ v0.9.5
   Installed MicroscopyTools ───── v0.2.2
  Installing 2 artifacts
   Installed artifact OpenSpecFun 194.9 KiB
   Installed artifact FFTW        2.2 MiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [5e5ac434] + MicroscopyTools v0.2.2
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [d360d2e6] + ChainRulesCore v1.26.0
⌅ [3da002f7] + ColorTypes v0.11.5
  [34da2185] + Compat v4.18.1
  [b552c78f] + DiffRules v1.15.1
  [ffbed154] + DocStringExtensions v0.9.5
  [7a1cc6ca] + FFTW v1.10.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [613c443e] + IndexFunArrays v0.2.7
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [5e5ac434] + MicroscopyTools v0.2.2
⌅ [98581153] + NDTools v0.7.1
  [77ba4419] + NaNMath v1.1.3
  [6fe1bfb0] + OffsetArrays v1.17.0
  [5432bcbf] + PaddedViews v0.5.12
  [21216c6a] + Preferences v1.5.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [276daf66] + SpecialFunctions v2.6.1
  [10745b16] + Statistics v1.11.1
  [bc48ee85] + Tullio v0.3.8
  [f5851436] + FFTW_jll v3.3.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0
  [856f044c] + MKL_jll v2025.2.0+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [1317d2d5] + oneTBB_jll v2022.0.0+1
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.9.9
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.67.1+0
  [3f19e933] + p7zip_jll v17.6.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 9.34s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
    777.6 ms  ✓ Reexport
   1034.3 ms  ✓ Statistics
   1881.3 ms  ✓ IrrationalConstants
   1045.7 ms  ✓ Requires
    929.2 ms  ✓ DocStringExtensions
    924.7 ms  ✓ AbstractFFTs
   1384.5 ms  ✓ OffsetArrays
    901.6 ms  ✓ NaNMath
   1065.1 ms  ✓ Compat
    959.2 ms  ✓ Preferences
   3390.1 ms  ✓ FixedPointNumbers
   1239.4 ms  ✓ LogExpFunctions
    732.1 ms  ✓ PaddedViews
    680.8 ms  ✓ Compat → CompatLinearAlgebraExt
   1054.8 ms  ✓ JLLWrappers
   3815.9 ms  ✓ ColorTypes
   1385.8 ms  ✓ NDTools
   2237.9 ms  ✓ ChainRulesCore
   3191.5 ms  ✓ IntelOpenMP_jll
   2487.5 ms  ✓ oneTBB_jll
    827.7 ms  ✓ FFTW_jll
    823.3 ms  ✓ OpenSpecFun_jll
   1201.8 ms  ✓ IndexFunArrays
    850.3 ms  ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt
   2171.4 ms  ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt
 Downloading artifact: IntelOpenMP
 Downloading artifact: oneTBB
   6561.6 ms  ✓ MKL_jll
   3426.6 ms  ✓ SpecialFunctions
   5342.3 ms  ✓ FFTW
   3038.2 ms  ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt
    799.6 ms  ✓ DiffRules
ERROR: LoadError: UndefVarError: `_shrink` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty
    @ ./Base_compiler.jl:50 [inlined]
  [2] _precompile_()
    @ Tullio._Precompile_Base ~/.julia/packages/Tullio/2zyFP/src/precompile/precompile_Base.jl:77
  [3] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/precompile.jl:14
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [5] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/Tullio.jl:27
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [11] include_string
    @ ./loading.jl:3004 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [13] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/Tullio.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ MKL_jll
│  Downloading artifact: IntelOpenMP
│   Downloading artifact: oneTBB
└  

Precompilation completed after 68.47s


################################################################################
# Loading
#

Loading MicroscopyTools...
ERROR: LoadError: UndefVarError: `_shrink` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty
    @ ./Base_compiler.jl:50 [inlined]
  [2] _precompile_()
    @ Tullio._Precompile_Base ~/.julia/packages/Tullio/2zyFP/src/precompile/precompile_Base.jl:77
  [3] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/precompile.jl:14
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [5] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/Tullio.jl:27
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [11] include_string
    @ ./loading.jl:3004 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [13] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/Tullio.jl:1
in expression starting at stdin:5
ERROR: LoadError: UndefVarError: `_shrink` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty
    @ ./Base_compiler.jl:50 [inlined]
  [2] _precompile_()
    @ Tullio._Precompile_Base ~/.julia/packages/Tullio/2zyFP/src/precompile/precompile_Base.jl:77
  [3] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/precompile.jl:14
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [5] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/Tullio.jl:27
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [11] include_string
    @ ./loading.jl:3004 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [13] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/Tullio.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ Tullio
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

Tullio 
Failed to precompile Tullio [bc48ee85-29a4-5162-ae0b-a64e1601d4bc] to "/home/pkgeval/.julia/compiled/v1.14/Tullio/jl_kbDVRL" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/MicroscopyTools/Sq39X/src/MicroscopyTools.jl:1

Loading failed after 20.99s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using MicroscopyTools'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 132.0s: package fails to precompile