Package evaluation to load Knockoffs on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T13:23:42.179 ################################################################################ # Set-up # Set-up completed after 0.12s ################################################################################ # Installation # Installing Knockoffs... Resolving package versions... Installed Glob ───────────────────────────── v1.3.1 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed InlineStrings ──────────────────── v1.4.5 Installed OrderedCollections ─────────────── v1.8.1 Installed SIMDTypes ──────────────────────── v0.1.0 Installed NearestNeighbors ───────────────── v0.4.22 Installed Optim ──────────────────────────── v1.13.2 Installed CpuId ──────────────────────────── v0.3.1 Installed ElasticArrays ──────────────────── v1.2.12 Installed SentinelArrays ─────────────────── v1.4.8 Installed Distances ──────────────────────── v0.10.12 Installed NaNMath ────────────────────────── v1.1.3 Installed FiniteDifferences ──────────────── v0.12.33 Installed StaticArrayInterface ───────────── v1.8.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed EnumX ──────────────────────────── v1.0.5 Installed PolynomialRoots ────────────────── v1.0.0 Installed WoodburyMatrices ───────────────── v1.0.0 Installed Tables ─────────────────────────── v1.12.1 Installed InverseFunctions ───────────────── v0.1.17 Installed NLSolversBase ──────────────────── v7.10.0 Installed Reexport ───────────────────────── v1.2.2 Installed Missings ───────────────────────── v1.2.0 Installed Preferences ────────────────────── v1.5.0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed TableTraits ────────────────────── v1.0.1 Installed Static ─────────────────────────── v1.3.1 Installed Crayons ────────────────────────── v4.1.1 Installed IterativeSolvers ───────────────── v0.9.4 Installed UnPack ─────────────────────────── v1.0.2 Installed SortingAlgorithms ──────────────── v1.2.2 Installed ADTypes ────────────────────────── v1.18.0 Installed DiffResults ────────────────────── v1.1.0 Installed CodecZstd ──────────────────────── v0.8.6 Installed ManualMemory ───────────────────── v0.1.8 Installed MacroTools ─────────────────────── v0.5.16 Installed DataStructures ─────────────────── v0.18.22 Installed FillArrays ─────────────────────── v1.14.0 Installed CodecZlib ──────────────────────── v0.7.8 Installed HostCPUFeatures ────────────────── v0.1.17 Installed DelimitedFiles ─────────────────── v1.9.1 Installed ArrayInterface ─────────────────── v7.22.0 Installed VectorizationBase ──────────────── v0.21.72 Installed StatsBase ──────────────────────── v0.33.21 Installed DataValueInterfaces ────────────── v1.0.0 Installed Richardson ─────────────────────── v1.4.2 Installed IrrationalConstants ────────────── v0.2.6 Installed CommonSubexpressions ───────────── v0.3.1 Installed LayoutPointers ─────────────────── v0.1.17 Installed StructUtils ────────────────────── v2.5.1 Installed Clustering ─────────────────────── v0.15.8 Installed Roots ──────────────────────────── v2.2.10 Installed BufferedStreams ────────────────── v1.2.2 Installed PooledArrays ───────────────────── v1.4.3 Installed Setfield ───────────────────────── v1.1.2 Installed PDMats ─────────────────────────── v0.11.35 Installed CodecXz ────────────────────────── v0.7.4 Installed WorkerUtilities ────────────────── v1.6.1 Installed BenchmarkTools ─────────────────── v1.6.3 Installed CompositionsBase ───────────────── v0.1.2 Installed DocStringExtensions ────────────── v0.9.5 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed CommonSolve ────────────────────── v0.2.4 Installed ForwardDiff ────────────────────── v1.2.2 Installed Hypatia ────────────────────────── v0.7.4 Installed DifferentiationInterface ───────── v0.7.10 Installed SLEEFPirates ───────────────────── v0.6.43 Installed AliasTables ────────────────────── v1.1.3 Installed StatsModels ────────────────────── v0.7.7 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed MathOptInterface ───────────────── v1.46.0 Installed ShiftedArrays ──────────────────── v2.0.0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed RecipesBase ────────────────────── v1.3.4 Installed SIMD ───────────────────────────── v3.7.2 Installed DataAPI ────────────────────────── v1.16.0 Installed Combinatorics ──────────────────── v1.0.3 Installed InvertedIndices ────────────────── v1.3.1 Installed StaticArraysCore ───────────────── v1.4.4 Installed StringManipulation ─────────────── v0.4.1 Installed SciMLPublic ────────────────────── v1.0.0 Installed StaticArrays ───────────────────── v1.9.15 Installed Requires ───────────────────────── v1.3.1 Installed GenericLinearAlgebra ───────────── v0.3.19 Installed LogExpFunctions ────────────────── v0.3.29 Installed glmnet_jll ─────────────────────── v5.0.0+0 Installed DiffRules ──────────────────────── v1.15.1 Installed Parsers ────────────────────────── v2.8.3 Installed JSON ───────────────────────────── v1.2.0 Installed PrettyTables ───────────────────── v3.1.0 Installed Distributions ──────────────────── v0.25.122 Installed Knockoffs ──────────────────────── v2.0.3 Installed JuMP ───────────────────────────── v1.29.2 Installed Rmath ──────────────────────────── v0.9.0 Installed BioGenerics ────────────────────── v0.1.5 Installed FiniteDiff ─────────────────────── v2.29.0 Installed CovarianceEstimation ───────────── v0.2.13 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed StatsFuns ──────────────────────── v1.5.2 Installed WeakRefStrings ─────────────────── v1.4.2 Installed JLLWrappers ────────────────────── v1.7.1 Installed XZ_jll ─────────────────────────── v5.8.1+0 Installed MutableArithmetics ─────────────── v1.6.7 Installed BlockDiagonals ─────────────────── v0.1.42 Installed GLMNet ─────────────────────────── v0.7.0 Installed StructTypes ────────────────────── v1.11.0 Installed CSV ────────────────────────────── v0.10.15 Installed DataFrames ─────────────────────── v1.8.1 Installed BGZFStreams ────────────────────── v0.3.2 Installed ThreadingUtilities ─────────────── v0.5.5 Installed VariantCallFormat ──────────────── v0.5.9 Installed Accessors ──────────────────────── v0.1.42 Installed Adapt ──────────────────────────── v4.4.0 Installed FilePathsBase ──────────────────── v0.9.24 Installed ConstructionBase ───────────────── v1.6.0 Installed GLM ────────────────────────────── v1.9.0 Installed HypergeometricFunctions ────────── v0.3.28 Installed LinearMaps ─────────────────────── v3.11.4 Installed TranscodingStreams ─────────────── v0.9.13 Installed Compat ─────────────────────────── v4.18.1 Installed PositiveFactorizations ─────────── v0.2.4 Installed TSVD ───────────────────────────── v0.4.4 Installed Statistics ─────────────────────── v1.11.1 Installed LoopVectorization ──────────────── v0.12.173 Installed ProgressMeter ──────────────────── v1.11.0 Installed StatsAPI ───────────────────────── v1.7.1 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed CPUSummary ─────────────────────── v0.2.7 Installed OffsetArrays ───────────────────── v1.17.0 Installed JSON3 ──────────────────────────── v1.14.3 Installed PrecompileTools ────────────────── v1.3.3 Installed ChainRulesCore ─────────────────── v1.26.0 Installed IfElse ─────────────────────────── v0.1.1 Installed PtrArrays ──────────────────────── v1.3.0 Installed Parameters ─────────────────────── v0.12.3 Installed LineSearches ───────────────────── v7.4.0 Installed SpecialFunctions ───────────────── v2.6.1 Installed PolyesterWeave ─────────────────── v0.2.2 Installed Automa ─────────────────────────── v1.1.0 Installed SnpArrays ──────────────────────── v0.3.22 Installing 5 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact glmnet 154.7 KiB Installed artifact Bzip2 503.5 KiB Installed artifact XZ 1.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [878bf26d] + Knockoffs v2.0.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [28d598bf] + BGZFStreams v0.3.2 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [0a1fb500] + BlockDiagonals v0.1.42 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [587fd27a] + CovarianceEstimation v0.2.13 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.10 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [fdbdab4c] + ElasticArrays v1.2.12 [4e289a0a] + EnumX v1.0.5 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [6a86dc24] + FiniteDiff v2.29.0 [26cc04aa] + FiniteDifferences v0.12.33 [f6369f11] + ForwardDiff v1.2.2 [38e38edf] + GLM v1.9.0 ⌃ [8d5ece8b] + GLMNet v0.7.0 [14197337] + GenericLinearAlgebra v0.3.19 [c27321d9] + Glob v1.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 ⌅ [b99e6be6] + Hypatia v0.7.4 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.2.0 [0f8b85d8] + JSON3 v1.14.3 [4076af6c] + JuMP v1.29.2 [878bf26d] + Knockoffs v2.0.3 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.4.0 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.173 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.46.0 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.7 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [1d0040c9] + PolyesterWeave v0.2.2 [3a141323] + PolynomialRoots v1.0.0 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [708f8203] + Richardson v1.4.2 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [431bcebd] + SciMLPublic v1.0.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.5.1 [9449cd9e] + TSVD v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [28eba6e3] + VariantCallFormat v0.5.9 [3d5dd08c] + VectorizationBase v0.21.72 [ea10d353] + WeakRefStrings v1.4.2 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [ffd25f8a] + XZ_jll v5.8.1+0 [78c6b45d] + glmnet_jll v5.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 17.61s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 4064.6 ms ✓ MacroTools 1644.8 ms ✓ InlineStrings 742.5 ms ✓ Reexport 1101.9 ms ✓ ConstructionBase 1934.5 ms ✓ IrrationalConstants 727.3 ms ✓ DataValueInterfaces 814.3 ms ✓ StatsAPI 2796.4 ms ✓ LinearMaps 1996.6 ms ✓ Combinatorics 746.3 ms ✓ CommonSolve 828.0 ms ✓ LaTeXStrings 869.0 ms ✓ Glob 1100.0 ms ✓ Statistics 839.9 ms ✓ Richardson 969.6 ms ✓ StaticArraysCore 763.1 ms ✓ IfElse 795.6 ms ✓ PtrArrays 866.7 ms ✓ ManualMemory 889.9 ms ✓ PositiveFactorizations 800.6 ms ✓ DataAPI 772.8 ms ✓ SciMLPublic 717.9 ms ✓ CommonWorldInvalidations 804.8 ms ✓ InvertedIndices 880.7 ms ✓ InverseFunctions 783.7 ms ✓ CompositionsBase 792.9 ms ✓ ShiftedArrays 808.4 ms ✓ EnumX 959.5 ms ✓ WorkerUtilities 1995.7 ms ✓ FillArrays 787.2 ms ✓ UnPack 1205.7 ms ✓ OrderedCollections 1308.2 ms ✓ ADTypes 1042.1 ms ✓ DocStringExtensions 1578.2 ms ✓ OffsetArrays 908.9 ms ✓ PolynomialRoots 963.4 ms ✓ BufferedStreams 702.0 ms ✓ SIMDTypes 707.0 ms ✓ IteratorInterfaceExtensions 1756.5 ms ✓ Crayons 928.1 ms ✓ DelimitedFiles 1577.9 ms ✓ GenericLinearAlgebra 972.0 ms ✓ NaNMath 1114.7 ms ✓ Requires 1199.8 ms ✓ SuiteSparse 1693.7 ms ✓ CpuId 1323.0 ms ✓ WoodburyMatrices 2714.4 ms ✓ SentinelArrays 1577.0 ms ✓ StructTypes 1381.1 ms ✓ StructUtils 1682.8 ms ✓ ProgressMeter 1096.2 ms ✓ Compat 1128.3 ms ✓ Preferences 2246.8 ms ✓ TranscodingStreams 10397.8 ms ✓ MutableArithmetics 5415.4 ms ✓ glmnet_jll 1677.2 ms ✓ CommonSubexpressions 786.0 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1875.4 ms ✓ LinearMaps → LinearMapsSparseArraysExt 1285.4 ms ✓ Statistics → SparseArraysExt 1406.1 ms ✓ Distances 774.4 ms ✓ LinearMaps → LinearMapsStatisticsExt 852.3 ms ✓ DiffResults 954.4 ms ✓ AliasTables 1739.9 ms ✓ ThreadingUtilities 959.5 ms ✓ Missings 1001.2 ms ✓ PooledArrays 832.0 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1652.4 ms ✓ InverseFunctions → InverseFunctionsTestExt 801.7 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1807.7 ms ✓ FillArrays → FillArraysSparseArraysExt 940.4 ms ✓ FillArrays → FillArraysStatisticsExt 930.0 ms ✓ Parameters 820.8 ms ✓ ADTypes → ADTypesConstructionBaseExt 1842.3 ms ✓ DifferentiationInterface 1408.9 ms ✓ LogExpFunctions 713.4 ms ✓ TableTraits 939.7 ms ✓ Adapt 1762.5 ms ✓ PDMats 789.7 ms ✓ Compat → CompatLinearAlgebraExt 843.8 ms ✓ PrecompileTools 1150.1 ms ✓ JLLWrappers 1374.0 ms ✓ BioGenerics 2350.1 ms ✓ CodecZstd 1517.5 ms ✓ CodecZlib 3090.2 ms ✓ Setfield 1180.1 ms ✓ Distances → DistancesSparseArraysExt 4840.8 ms ✓ Accessors 1263.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 766.2 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1678.3 ms ✓ Tables 1116.6 ms ✓ ArrayInterface 1190.0 ms ✓ Adapt → AdaptSparseArraysExt 830.3 ms ✓ ElasticArrays 881.1 ms ✓ TSVD 800.5 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1417.2 ms ✓ FillArrays → FillArraysPDMatsExt 2680.0 ms ✓ ChainRulesCore 2082.7 ms ✓ FilePathsBase 4234.0 ms ✓ DataStructures 3119.1 ms ✓ StringManipulation 16515.3 ms ✓ SIMD 13465.6 ms ✓ StaticArrays 2720.2 ms ✓ RecipesBase 16102.5 ms ✓ Parsers 5249.1 ms ✓ Static 1621.3 ms ✓ Bzip2_jll 1637.1 ms ✓ XZ_jll 1698.8 ms ✓ Rmath_jll 1437.7 ms ✓ OpenSpecFun_jll 1523.7 ms ✓ BGZFStreams 1589.4 ms ✓ Accessors → TestExt 2366.3 ms ✓ Accessors → LinearAlgebraExt 796.2 ms ✓ StructUtils → StructUtilsTablesExt 730.6 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1153.8 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1302.2 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 853.9 ms ✓ LinearMaps → LinearMapsChainRulesCoreExt 803.6 ms ✓ ADTypes → ADTypesChainRulesCoreExt 853.3 ms ✓ Distances → DistancesChainRulesCoreExt 860.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3019.6 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1135.7 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2588.1 ms ✓ FilePathsBase → FilePathsBaseTestExt 980.2 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1567.0 ms ✓ SortingAlgorithms 2766.7 ms ✓ QuadGK 39388.3 ms ✓ PrettyTables 22208.0 ms ✓ Automa 1191.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1269.2 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1346.8 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1325.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1261.0 ms ✓ Adapt → AdaptStaticArraysExt 1483.8 ms ✓ Accessors → StaticArraysExt 3864.6 ms ✓ IterativeSolvers 13421.3 ms ✓ JSON3 7191.4 ms ✓ JSON 862.3 ms ✓ InlineStrings → ParsersExt 921.2 ms ✓ BitTwiddlingConvenienceFunctions 2339.9 ms ✓ CPUSummary 10759.5 ms ✓ StaticArrayInterface 1777.2 ms ✓ CodecBzip2 1560.6 ms ✓ CodecXz 1461.4 ms ✓ Rmath 4978.6 ms ✓ SpecialFunctions 6619.0 ms ✓ Roots 1292.3 ms ✓ FiniteDiff 8698.7 ms ✓ StatsBase 89227.2 ms ✓ DataFrames [ Info: Compiling VCF parser... 20459.4 ms ✓ VariantCallFormat 4206.2 ms ✓ NearestNeighbors 2878.8 ms ✓ FiniteDifferences 3463.3 ms ✓ BenchmarkTools 2534.9 ms ✓ WeakRefStrings 1506.8 ms ✓ HostCPUFeatures 1657.4 ms ✓ PolyesterWeave 1045.5 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1557.9 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1062.7 ms ✓ CloseOpenIntervals 1259.5 ms ✓ LayoutPointers 3962.8 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2440.1 ms ✓ HypergeometricFunctions 1235.3 ms ✓ DiffRules 1150.1 ms ✓ Roots → RootsChainRulesCoreExt 1383.4 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1290.6 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 989.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 5451.0 ms ✓ CovarianceEstimation 8900.9 ms ✓ Clustering 2049.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDifferencesExt 2903.0 ms ✓ BlockDiagonals 29638.5 ms ✓ CSV 15694.9 ms ✓ VectorizationBase 2810.6 ms ✓ StatsFuns 6427.6 ms ✓ ForwardDiff 4336.7 ms ✓ SLEEFPirates 3334.3 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 999.6 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 9133.4 ms ✓ StatsModels 13671.8 ms ✓ Distributions 2085.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1513.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1415.7 ms ✓ Roots → RootsForwardDiffExt 76550.2 ms ✓ MathOptInterface 40664.3 ms ✓ LoopVectorization 9348.2 ms ✓ GLM 4011.7 ms ✓ Distributions → DistributionsTestExt 4111.5 ms ✓ Distributions → DistributionsChainRulesCoreExt ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/e80442d59af73a1877a108eb3fab2cd12d25dc56/lib/libglmnet.so" libgfortran.so.5: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen  @ ./libdl.jl:119 [inlined]  [3] dlopen(s::String)  @ Base.Libc.Libdl ./libdl.jl:119  [4] __init__()  @ glmnet_jll ~/.julia/packages/glmnet_jll/en9XD/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:37  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1458  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1446  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1334  [8] _include_from_serialized  @ ./loading.jl:1291 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2166  [10] _require_search_from_serialized  @ ./loading.jl:2060 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2710  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2576  [13] macro expansion  @ ./loading.jl:2504 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2468  [16] require  @ ./loading.jl:2444 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:3  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [27] include_string  @ ./loading.jl:3004 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [29] _start()  @ Base ./client.jl:577 during initialization of module glmnet_jll in expression starting at /home/pkgeval/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ Precompilation completed after 769.69s ################################################################################ # Loading # Loading Knockoffs... ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/e80442d59af73a1877a108eb3fab2cd12d25dc56/lib/libglmnet.so" libgfortran.so.5: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen  @ ./libdl.jl:119 [inlined]  [3] dlopen(s::String)  @ Base.Libc.Libdl ./libdl.jl:119  [4] __init__()  @ glmnet_jll ~/.julia/packages/glmnet_jll/en9XD/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:37  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1458  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1446  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1334  [8] _include_from_serialized  @ ./loading.jl:1291 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2166  [10] _require_search_from_serialized  @ ./loading.jl:2060 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2710  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2576  [13] macro expansion  @ ./loading.jl:2504 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2468  [16] require  @ ./loading.jl:2444 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:3  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [27] include_string  @ ./loading.jl:3004 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [29] _start()  @ Base ./client.jl:577 during initialization of module glmnet_jll in expression starting at /home/pkgeval/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:1 in expression starting at stdin:5 ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [7] include_string  @ ./loading.jl:3004 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ SnpArrays │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.14/SnpArrays/jl_nlmzjh" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/Knockoffs/Y6xoQ/src/Knockoffs.jl:1 Loading failed after 166.68s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using Knockoffs'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [7] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 989.69s: package requires a missing binary dependency