Package evaluation to load KmerAnalysisMakie on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T13:41:13.668


################################################################################
# Set-up
#


Set-up completed after 0.12s


################################################################################
# Installation
#

Installing KmerAnalysisMakie...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [da464f59] + KmerAnalysisMakie v0.2.3
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
⌅ [537997a7] + AbstractPlotting v0.11.2
⌃ [79e6a3ab] + Adapt v3.6.0
⌃ [4fba245c] + ArrayInterface v7.7.1
⌅ [67c07d97] + Automa v0.7.0
  [47718e42] + BioGenerics v0.1.5
⌅ [7e6ae17a] + BioSequences v2.0.1
⌅ [3c28c6f8] + BioSymbols v4.0.2
⌅ [fa961155] + CEnum v0.4.2
  [d360d2e6] + ChainRulesCore v1.26.0
  [a2cac450] + ColorBrewer v0.4.2
⌃ [35d6a980] + ColorSchemes v3.26.0
⌅ [3da002f7] + ColorTypes v0.10.12
⌅ [c3611d14] + ColorVectorSpace v0.8.7
⌅ [5ae59095] + Colors v0.12.11
  [861a8166] + Combinatorics v1.0.3
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.18.1
⌅ [d38c429a] + Contour v0.5.7
  [9a962f9c] + DataAPI v1.16.0
⌅ [864edb3b] + DataStructures v0.18.22
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⌅ [c87230d0] + FFMPEG v0.3.0
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⌅ [663a7486] + FreeTypeAbstraction v0.8.4
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  [a2bd30eb] + Graphics v1.1.3
  [42e2da0e] + Grisu v1.0.2
  [615f187c] + IfElse v0.1.1
⌅ [a09fc81d] + ImageCore v0.8.22
⌅ [82e4d734] + ImageIO v0.2.0
  [1cb3b9ac] + IndexableBitVectors v1.0.0
⌅ [9b13fd28] + IndirectArrays v0.5.1
⌅ [8197267c] + IntervalSets v0.5.4
⌅ [92d709cd] + IrrationalConstants v0.1.1
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [682c06a0] + JSON v1.2.0
  [a20136b7] + KmerAnalysis v0.4.4
  [da464f59] + KmerAnalysisMakie v0.2.3
  [2ab3a3ac] + LogExpFunctions v0.3.29
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 8.11s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   1131.8 ms  ✓ IndirectArrays
   1707.6 ms  ✓ IrrationalConstants
WARNING: Imported binding Base.@_pure_meta was undeclared at import time during import to StaticArrays.
WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import.
  NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Tuple end`.
  Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`.
WARNING: Constructor for type "Array" was extended in `StaticArrays` without explicit qualification or import.
  NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Array end`.
  Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`.
   5670.6 ms  ✓ StaticArrays
    969.4 ms  ✓ Observables
    927.4 ms  ✓ CEnum
   9588.5 ms  ✓ ColorTypes
   1398.9 ms  ✓ Adapt
   1253.5 ms  ✓ Showoff
   1606.6 ms  ✓ StructArrays
   1192.5 ms  ✓ DocStringExtensions
   2250.9 ms  ✓ TranscodingStreams
   1404.6 ms  ✓ x264_jll
   1388.5 ms  ✓ x265_jll
   5101.3 ms  ✓ Static
    969.5 ms  ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt
   1549.9 ms  ✓ libass_jll
   1089.9 ms  ✓ Contour
   2325.2 ms  ✓ FreeType
   6605.0 ms  ✓ Colors
ERROR: LoadError: ArgumentError: Cannot load (`using/import`) module Adapt into module AdaptStaticArraysCoreExt in package AdaptStaticArraysCoreExt
because package AdaptStaticArraysCoreExt does not have Adapt in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /home/pkgeval/.julia/environments/v1.14/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have AdaptStaticArraysCoreExt checked out for development and have
  added Adapt as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with AdaptStaticArraysCoreExt
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2488 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [4] require
    @ ./loading.jl:2444 [inlined]
  [5] eval_import_path
    @ ./module.jl:36 [inlined]
  [6] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
  [7] _eval_using
    @ ./module.jl:137 [inlined]
  [8] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
  [9] top-level scope
    @ ~/.julia/packages/Adapt/Ur60R/ext/AdaptStaticArraysExt.jl:3
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [15] include_string
    @ ./loading.jl:3004 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [17] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Adapt/Ur60R/ext/AdaptStaticArraysExt.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ StaticArrays
│  WARNING: Imported binding Base.@_pure_meta was undeclared at import time during import to StaticArrays.
│  WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import.
│    NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Tuple end`.
│    Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`.
│  WARNING: Constructor for type "Array" was extended in `StaticArrays` without explicit qualification or import.
│    NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Array end`.
│    Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`.
└  

Precompilation completed after 58.99s


################################################################################
# Loading
#

Loading KmerAnalysisMakie...
ERROR: LoadError: ArgumentError: Cannot load (`using/import`) module Adapt into module AdaptStaticArraysCoreExt in package AdaptStaticArraysCoreExt
because package AdaptStaticArraysCoreExt does not have Adapt in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /home/pkgeval/.julia/environments/v1.14/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have AdaptStaticArraysCoreExt checked out for development and have
  added Adapt as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with AdaptStaticArraysCoreExt
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2488 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [4] require
    @ ./loading.jl:2444 [inlined]
  [5] eval_import_path
    @ ./module.jl:36 [inlined]
  [6] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
  [7] _eval_using
    @ ./module.jl:137 [inlined]
  [8] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
  [9] top-level scope
    @ ~/.julia/packages/Adapt/Ur60R/ext/AdaptStaticArraysExt.jl:3
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [15] include_string
    @ ./loading.jl:3004 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [17] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Adapt/Ur60R/ext/AdaptStaticArraysExt.jl:1
in expression starting at stdin:5
ERROR: LoadError: ArgumentError: Cannot load (`using/import`) module Adapt into module AdaptStaticArraysCoreExt in package AdaptStaticArraysCoreExt
because package AdaptStaticArraysCoreExt does not have Adapt in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /home/pkgeval/.julia/environments/v1.14/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have AdaptStaticArraysCoreExt checked out for development and have
  added Adapt as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with AdaptStaticArraysCoreExt
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2488 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [4] require
    @ ./loading.jl:2444 [inlined]
  [5] eval_import_path
    @ ./module.jl:36 [inlined]
  [6] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
  [7] _eval_using
    @ ./module.jl:137 [inlined]
  [8] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
  [9] top-level scope
    @ ~/.julia/packages/Adapt/Ur60R/ext/AdaptStaticArraysExt.jl:3
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [15] include_string
    @ ./loading.jl:3004 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [17] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Adapt/Ur60R/ext/AdaptStaticArraysExt.jl:1
in expression starting at stdin:5
WARNING: method definition for faces at /home/pkgeval/.julia/packages/GeometryBasics/CMxB4/src/geometry_primitives.jl:339 declares type variable FT but does not use it.
WARNING: method definition for centered at /home/pkgeval/.julia/packages/GeometryBasics/CMxB4/src/rectangles.jl:519 declares type variable N but does not use it.
WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/CMxB4/src/meshes.jl:199 declares type variable FT but does not use it.
WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/CMxB4/src/meshes.jl:199 declares type variable VT but does not use it.
WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/CMxB4/src/meshes.jl:211 declares type variable FT but does not use it.
WARNING: method definition for volume at /home/pkgeval/.julia/packages/GeometryBasics/CMxB4/src/meshes.jl:211 declares type variable VT but does not use it.

  1 dependency had output during precompilation:
┌ GeometryBasics
│  [Output was shown above]
└  
WARNING: Constructor for type "UnitRange" was extended in `IntervalSets` without explicit qualification or import.
  NOTE: Assumed "UnitRange" refers to `Base.UnitRange`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function UnitRange end`.
  Hint: To silence the warning, qualify `UnitRange` as `Base.UnitRange` in the method signature or explicitly `import Base: UnitRange`.

  1 dependency had output during precompilation:
┌ IntervalSets
│  [Output was shown above]
└  
ERROR: LoadError: ArgumentError: Cannot load (`using/import`) module Adapt into module AdaptStaticArraysCoreExt in package AdaptStaticArraysCoreExt
because package AdaptStaticArraysCoreExt does not have Adapt in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /home/pkgeval/.julia/environments/v1.14/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have AdaptStaticArraysCoreExt checked out for development and have
  added Adapt as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with AdaptStaticArraysCoreExt
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2488 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [4] require
    @ ./loading.jl:2444 [inlined]
  [5] eval_import_path
    @ ./module.jl:36 [inlined]
  [6] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
  [7] _eval_using
    @ ./module.jl:137 [inlined]
  [8] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
  [9] top-level scope
    @ ~/.julia/packages/Adapt/Ur60R/ext/AdaptStaticArraysExt.jl:3
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [15] include_string
    @ ./loading.jl:3004 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [17] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Adapt/Ur60R/ext/AdaptStaticArraysExt.jl:1
in expression starting at stdin:5
WARNING: method definition for _palette_alpha at /home/pkgeval/.julia/packages/PNGFiles/mwPJs/src/io.jl:520 declares type variable T but does not use it.

  1 dependency had output during precompilation:
┌ PNGFiles
│  WARNING: method definition for _palette_alpha at /home/pkgeval/.julia/packages/PNGFiles/mwPJs/src/io.jl:520 declares type variable T but does not use it.
└  
WARNING: method definition for apply_transform at /home/pkgeval/.julia/packages/AbstractPlotting/q9DyS/src/layouting/transformation.jl:222 declares type variable T but does not use it.
WARNING: Constructor for type "Char" was extended in `BioSymbols` without explicit qualification or import.
  NOTE: Assumed "Char" refers to `Base.Char`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Char end`.
  Hint: To silence the warning, qualify `Char` as `Base.Char` in the method signature or explicitly `import Base: Char`.
[ Info: Compiling bit-parallel GC counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel mismatch counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel match counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel ambiguity counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel certainty counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel gap counter for LongSequence{<:NucleicAcidAlphabet}
WARNING: method definition for BroadcastStyle at /home/pkgeval/.julia/packages/BioSequences/01nDP/src/search/pwm.jl:76 declares type variable T but does not use it.
WARNING: method definition for BroadcastStyle at /home/pkgeval/.julia/packages/BioSequences/01nDP/src/search/pwm.jl:76 declares type variable S but does not use it.
WARNING: method definition for IndexedCounts at /home/pkgeval/.julia/packages/KmerAnalysis/67DRc/src/IndexedCounts.jl:18 declares type variable M but does not use it.

  3 dependencies had output during precompilation:
┌ KmerAnalysis
│  [Output was shown above]
└  
┌ BioSequences
│  [ Info: Compiling bit-parallel GC counter for LongSequence{<:NucleicAcidAlphabet}
│  [ Info: Compiling bit-parallel mismatch counter for LongSequence{<:NucleicAcidAlphabet}
│  [ Info: Compiling bit-parallel match counter for LongSequence{<:NucleicAcidAlphabet}
│  [ Info: Compiling bit-parallel ambiguity counter for LongSequence{<:NucleicAcidAlphabet}
│  [ Info: Compiling bit-parallel certainty counter for LongSequence{<:NucleicAcidAlphabet}
│  [ Info: Compiling bit-parallel gap counter for LongSequence{<:NucleicAcidAlphabet}
│  WARNING: method definition for BroadcastStyle at /home/pkgeval/.julia/packages/BioSequences/01nDP/src/search/pwm.jl:76 declares type variable T but does not use it.
│  WARNING: method definition for BroadcastStyle at /home/pkgeval/.julia/packages/BioSequences/01nDP/src/search/pwm.jl:76 declares type variable S but does not use it.
└  
┌ BioSymbols
│  WARNING: Constructor for type "Char" was extended in `BioSymbols` without explicit qualification or import.
│    NOTE: Assumed "Char" refers to `Base.Char`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Char end`.
│    Hint: To silence the warning, qualify `Char` as `Base.Char` in the method signature or explicitly `import Base: Char`.
└  

Loading completed after 274.87s

PkgEval succeeded after 365.19s