Package evaluation to load FBCModelTests on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T09:58:12.048


################################################################################
# Set-up
#


Set-up completed after 0.12s


################################################################################
# Installation
#

Installing FBCModelTests...
   Resolving package versions...
   Installed libaec_jll ──────────── v1.1.4+0
   Installed Bzip2_jll ───────────── v1.0.9+0
   Installed DiffResults ─────────── v1.1.0
   Installed MacroTools ──────────── v0.5.16
   Installed DelimitedFiles ──────── v1.9.1
   Installed ForwardDiff ─────────── v1.2.2
   Installed SBML ────────────────── v1.4.4
   Installed DataStructures ──────── v0.19.3
   Installed CodecZlib ───────────── v0.7.8
   Installed MPICH_jll ───────────── v4.3.2+0
   Installed PeriodicTable ───────── v1.2.1
   Installed MicrosoftMPI_jll ────── v10.1.4+3
   Installed Compat ──────────────── v4.18.1
   Installed Statistics ──────────── v1.11.1
   Installed OrderedCollections ──── v1.8.1
   Installed TranscodingStreams ──── v0.11.3
   Installed Xorg_libpciaccess_jll ─ v0.18.1+0
   Installed IrrationalConstants ─── v0.2.6
   Installed StaticArraysCore ────── v1.4.4
   Installed CodecBzip2 ──────────── v0.8.5
   Installed FBCModelTests ───────── v0.3.0
   Installed CommonSubexpressions ── v0.3.1
   Installed PrecompileTools ─────── v1.3.3
   Installed NaNMath ─────────────── v1.1.3
   Installed OpenSpecFun_jll ─────── v0.5.6+0
   Installed Requires ────────────── v1.3.1
   Installed JSON3 ───────────────── v1.14.3
   Installed StableRNGs ──────────── v1.0.3
   Installed HDF5_jll ────────────── v1.14.6+0
   Installed LogExpFunctions ─────── v0.3.29
   Installed MD5 ─────────────────── v0.2.3
   Installed DiffRules ───────────── v1.15.1
   Installed OpenMPI_jll ─────────── v5.0.8+0
   Installed SBML_jll ────────────── v5.20.1+0
   Installed BufferedStreams ─────── v1.2.2
   Installed Parsers ─────────────── v2.8.3
   Installed JSON ────────────────── v0.21.4
   Installed Hwloc_jll ───────────── v2.12.2+0
   Installed IfElse ──────────────── v0.1.1
   Installed XML2_jll ────────────── v2.13.9+0
   Installed Unitful ─────────────── v1.25.1
   Installed PikaParser ──────────── v0.5.2
   Installed SpecialFunctions ────── v2.6.1
   Installed MutableArithmetics ──── v1.6.7
   Installed Preferences ─────────── v1.5.0
   Installed MPIPreferences ──────── v0.1.11
   Installed COBREXA ─────────────── v1.5.1
   Installed JLLWrappers ─────────── v1.7.1
   Installed Libiconv_jll ────────── v1.18.0+0
   Installed HDF5 ────────────────── v0.16.16
   Installed BenchmarkTools ──────── v1.6.3
   Installed StructTypes ─────────── v1.11.0
   Installed MPItrampoline_jll ───── v5.5.4+0
   Installed MAT ─────────────────── v0.10.7
   Installed DocStringExtensions ─── v0.9.5
   Installed DistributedData ─────── v0.2.0
   Installed JuMP ────────────────── v1.29.2
   Installed MathOptInterface ────── v1.46.0
  Installing 10 artifacts
   Installed artifact Xorg_libpciaccess 24.8 KiB
   Installed artifact libaec            49.6 KiB
   Installed artifact OpenSpecFun       194.9 KiB
   Installed artifact Bzip2             503.5 KiB
   Installed artifact MPICH             3.3 MiB
   Installed artifact Libiconv          1.9 MiB
   Installed artifact XML2              2.5 MiB
   Installed artifact Hwloc             3.5 MiB
   Installed artifact SBML              5.8 MiB
   Installed artifact HDF5              5.7 MiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [1060cd45] + FBCModelTests v0.3.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [6e4b80f9] + BenchmarkTools v1.6.3
  [e1450e63] + BufferedStreams v1.2.2
⌅ [babc4406] + COBREXA v1.5.1
  [523fee87] + CodecBzip2 v0.8.5
  [944b1d66] + CodecZlib v0.7.8
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [864edb3b] + DataStructures v0.19.3
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [f6a0035f] + DistributedData v0.2.0
  [ffbed154] + DocStringExtensions v0.9.5
  [1060cd45] + FBCModelTests v0.3.0
  [f6369f11] + ForwardDiff v1.2.2
⌅ [f67ccb44] + HDF5 v0.16.16
  [615f187c] + IfElse v0.1.1
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
⌅ [682c06a0] + JSON v0.21.4
  [0f8b85d8] + JSON3 v1.14.3
  [4076af6c] + JuMP v1.29.2
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [23992714] + MAT v0.10.7
  [6ac74813] + MD5 v0.2.3
  [3da0fdf6] + MPIPreferences v0.1.11
  [1914dd2f] + MacroTools v0.5.16
  [b8f27783] + MathOptInterface v1.46.0
  [d8a4904e] + MutableArithmetics v1.6.7
  [77ba4419] + NaNMath v1.1.3
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
  [7b2266bf] + PeriodicTable v1.2.1
⌅ [3bbf5609] + PikaParser v0.5.2
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [ae029012] + Requires v1.3.1
⌅ [e5567a89] + SBML v1.4.4
  [276daf66] + SpecialFunctions v2.6.1
  [860ef19b] + StableRNGs v1.0.3
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [856f2bd8] + StructTypes v1.11.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [1986cc42] + Unitful v1.25.1
  [6e34b625] + Bzip2_jll v1.0.9+0
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.2+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [7cb0a576] + MPICH_jll v4.3.2+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.8+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [bb12108a] + SBML_jll v5.20.1+0
⌅ [02c8fc9c] + XML2_jll v2.13.9+0
  [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] + libaec_jll v1.1.4+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
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  [9abbd945] + Profile v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
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  [8dfed614] + Test v1.11.0
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  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.9.9
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.67.1+0
  [3f19e933] + p7zip_jll v17.6.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log`

Installation completed after 22.58s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   4013.0 ms  ✓ MacroTools
   1149.7 ms  ✓ Statistics
   1997.5 ms  ✓ IrrationalConstants
ERROR: LoadError: ArgumentError: Cannot load (`using/import`) module SHA into module MD5 in package MD5
because package MD5 does not have SHA in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /home/pkgeval/.julia/environments/v1.14/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have MD5 checked out for development and have
  added SHA as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with MD5
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2488 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [4] require
    @ ./loading.jl:2444 [inlined]
  [5] eval_import_path
    @ ./module.jl:36 [inlined]
  [6] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
  [7] _eval_using
    @ ./module.jl:137 [inlined]
  [8] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
  [9] top-level scope
    @ ~/.julia/packages/MD5/MwEAX/src/MD5.jl:4
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [15] include_string
    @ ./loading.jl:3004 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [17] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/MD5/MwEAX/src/MD5.jl:1
in expression starting at stdin:5

Precompilation completed after 17.99s


################################################################################
# Loading
#

Loading FBCModelTests...
ERROR: LoadError: ArgumentError: Cannot load (`using/import`) module SHA into module MD5 in package MD5
because package MD5 does not have SHA in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /home/pkgeval/.julia/environments/v1.14/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have MD5 checked out for development and have
  added SHA as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with MD5
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2488 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [4] require
    @ ./loading.jl:2444 [inlined]
  [5] eval_import_path
    @ ./module.jl:36 [inlined]
  [6] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
  [7] _eval_using
    @ ./module.jl:137 [inlined]
  [8] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
  [9] top-level scope
    @ ~/.julia/packages/MD5/MwEAX/src/MD5.jl:4
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [15] include_string
    @ ./loading.jl:3004 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [17] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/MD5/MwEAX/src/MD5.jl:1
in expression starting at stdin:5
ERROR: LoadError: ArgumentError: Cannot load (`using/import`) module SHA into module MD5 in package MD5
because package MD5 does not have SHA in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /home/pkgeval/.julia/environments/v1.14/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have MD5 checked out for development and have
  added SHA as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with MD5
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2488 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [4] require
    @ ./loading.jl:2444 [inlined]
  [5] eval_import_path
    @ ./module.jl:36 [inlined]
  [6] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
  [7] _eval_using
    @ ./module.jl:137 [inlined]
  [8] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
  [9] top-level scope
    @ ~/.julia/packages/MD5/MwEAX/src/MD5.jl:4
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [15] include_string
    @ ./loading.jl:3004 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [17] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/MD5/MwEAX/src/MD5.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ MD5
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

MD5 
Failed to precompile MD5 [6ac74813-4b46-53a4-afec-0b5dc9d7885c] to "/home/pkgeval/.julia/compiled/v1.14/MD5/jl_SkjSb8" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/FBCModelTests/Qgfx1/src/frog/report.jl:2
in expression starting at /home/pkgeval/.julia/packages/FBCModelTests/Qgfx1/src/frog.jl:2
in expression starting at /home/pkgeval/.julia/packages/FBCModelTests/Qgfx1/src/FBCModelTests.jl:1

Loading failed after 339.65s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using FBCModelTests'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 427.63s: package fails to precompile