Package evaluation to load EcologicalNetworksPlots on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T08:38:00.860


################################################################################
# Set-up
#


Set-up completed after 0.11s


################################################################################
# Installation
#

Installing EcologicalNetworksPlots...
   Resolving package versions...
   Installed Rmath_jll ─────────────── v0.5.1+0
   Installed AliasTables ───────────── v1.1.3
   Installed DelimitedFiles ────────── v1.9.1
   Installed FillArrays ────────────── v1.14.0
   Installed OrderedCollections ────── v1.8.1
   Installed HypergeometricFunctions ─ v0.3.28
   Installed DataStructures ────────── v0.18.22
   Installed StatsBase ─────────────── v0.33.21
   Installed RecipesBase ───────────── v1.3.4
   Installed Combinatorics ─────────── v1.0.3
   Installed Compat ────────────────── v4.18.1
   Installed DataAPI ───────────────── v1.16.0
   Installed Statistics ────────────── v1.11.1
   Installed PrecompileTools ───────── v1.3.3
   Installed OpenSpecFun_jll ───────── v0.5.6+0
   Installed IrrationalConstants ───── v0.2.6
   Installed StatsAPI ──────────────── v1.7.1
   Installed Requires ──────────────── v1.3.1
   Installed QuadGK ────────────────── v2.11.2
   Installed EcologicalNetworksPlots ─ v0.1.0
   Installed Rmath ─────────────────── v0.9.0
   Installed StatsFuns ─────────────── v1.5.2
   Installed LogExpFunctions ───────── v0.3.29
   Installed PtrArrays ─────────────── v1.3.0
   Installed Reexport ──────────────── v1.2.2
   Installed SpecialFunctions ──────── v2.6.1
   Installed EcologicalNetworks ────── v0.5.2
   Installed Distributions ─────────── v0.25.122
   Installed Missings ──────────────── v1.2.0
   Installed JLLWrappers ───────────── v1.7.1
   Installed Preferences ───────────── v1.5.0
   Installed PDMats ────────────────── v0.11.35
   Installed SortingAlgorithms ─────── v1.2.2
   Installed DocStringExtensions ───── v0.9.5
  Installing 2 artifacts
   Installed artifact OpenSpecFun 194.9 KiB
   Installed artifact Rmath       121.9 KiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [9f7a259d] + EcologicalNetworksPlots v0.1.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [861a8166] + Combinatorics v1.0.3
  [34da2185] + Compat v4.18.1
  [9a962f9c] + DataAPI v1.16.0
⌅ [864edb3b] + DataStructures v0.18.22
  [8bb1440f] + DelimitedFiles v1.9.1
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [f03a62fe] + EcologicalNetworks v0.5.2
  [9f7a259d] + EcologicalNetworksPlots v0.1.0
  [1a297f60] + FillArrays v1.14.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
⌃ [90014a1f] + PDMats v0.11.35
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.9.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.5.2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 10.27s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
    704.6 ms  ✓ Reexport
   1021.5 ms  ✓ Statistics
    761.9 ms  ✓ DataAPI
   1997.2 ms  ✓ IrrationalConstants
    771.5 ms  ✓ StatsAPI
   1112.0 ms  ✓ Requires
   1187.2 ms  ✓ OrderedCollections
   1057.4 ms  ✓ DocStringExtensions
   1998.3 ms  ✓ Combinatorics
   2014.0 ms  ✓ FillArrays
    849.6 ms  ✓ PtrArrays
   1182.5 ms  ✓ SuiteSparse
    930.8 ms  ✓ DelimitedFiles
   1076.9 ms  ✓ Compat
   1057.0 ms  ✓ Preferences
   1235.6 ms  ✓ Statistics → SparseArraysExt
    896.7 ms  ✓ Missings
   1338.9 ms  ✓ LogExpFunctions
   1440.1 ms  ✓ FillArrays → FillArraysSparseArraysExt
    894.0 ms  ✓ FillArrays → FillArraysStatisticsExt
    929.3 ms  ✓ AliasTables
   1754.3 ms  ✓ PDMats
    787.4 ms  ✓ Compat → CompatLinearAlgebraExt
   1149.0 ms  ✓ JLLWrappers
    880.2 ms  ✓ PrecompileTools
   1401.1 ms  ✓ FillArrays → FillArraysPDMatsExt
   3748.2 ms  ✓ DataStructures
   1425.9 ms  ✓ Rmath_jll
   1411.4 ms  ✓ OpenSpecFun_jll
   2777.4 ms  ✓ RecipesBase
   1576.8 ms  ✓ SortingAlgorithms
   2801.8 ms  ✓ QuadGK
   1418.8 ms  ✓ Rmath
   4876.9 ms  ✓ SpecialFunctions
   8128.8 ms  ✓ StatsBase
   2318.4 ms  ✓ HypergeometricFunctions
   2869.0 ms  ✓ StatsFuns
  13502.5 ms  ✓ Distributions
WARNING: Method definition entropy(NT) where {NT<:EcologicalNetworks.AbstractEcologicalNetwork} in module EcologicalNetworks at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:40 overwritten at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:53.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
   6167.0 ms  ? EcologicalNetworks
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("f03a62fe-f8ab-5b77-a061-bb599b765229"), "EcologicalNetworks") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2717
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2576
  [4] macro expansion
    @ ./loading.jl:2504 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [7] require
    @ ./loading.jl:2444 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/EcologicalNetworksPlots/91wxJ/src/EcologicalNetworksPlots.jl:3
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [18] include_string
    @ ./loading.jl:3004 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/EcologicalNetworksPlots/91wxJ/src/EcologicalNetworksPlots.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ EcologicalNetworks
│  WARNING: Method definition entropy(NT) where {NT<:EcologicalNetworks.AbstractEcologicalNetwork} in module EcologicalNetworks at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:40 overwritten at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:53.
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  

Precompilation completed after 94.64s


################################################################################
# Loading
#

Loading EcologicalNetworksPlots...
WARNING: Method definition entropy(NT) where {NT<:EcologicalNetworks.AbstractEcologicalNetwork} in module EcologicalNetworks at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:40 overwritten at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:53.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("f03a62fe-f8ab-5b77-a061-bb599b765229"), "EcologicalNetworks") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2717
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2576
  [4] macro expansion
    @ ./loading.jl:2504 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [7] require
    @ ./loading.jl:2444 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/EcologicalNetworksPlots/91wxJ/src/EcologicalNetworksPlots.jl:3
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [18] include_string
    @ ./loading.jl:3004 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/EcologicalNetworksPlots/91wxJ/src/EcologicalNetworksPlots.jl:1
in expression starting at stdin:5

  2 dependencies had output during precompilation:
┌ EcologicalNetworksPlots
│  [Output was shown above]
└  
┌ EcologicalNetworks
│  WARNING: Method definition entropy(NT) where {NT<:EcologicalNetworks.AbstractEcologicalNetwork} in module EcologicalNetworks at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:40 overwritten at /home/pkgeval/.julia/packages/EcologicalNetworks/pxEMG/src/information/entropy.jl:53.
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  
ERROR: The following 1 package failed to precompile:

EcologicalNetworksPlots 
Failed to precompile EcologicalNetworksPlots [9f7a259d-73a7-556d-a7a2-3eb122d3865b] to "/home/pkgeval/.julia/compiled/v1.14/EcologicalNetworksPlots/jl_2e5UXF" (ProcessExited(1)).


Loading failed after 12.03s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using EcologicalNetworksPlots'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 135.22s: illegal method overwrites during precompilation