Package evaluation to load BiochemicalVisualization on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T13:23:21.499


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# Set-up
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Set-up completed after 0.15s


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# Installation
#

Installing BiochemicalVisualization...
   Resolving package versions...
   Installed HarfBuzz_jll ──────────────── v8.5.1+0
   Installed Bzip2_jll ─────────────────── v1.0.9+0
   Installed Libuuid_jll ───────────────── v2.41.2+0
   Installed Calculus ──────────────────── v0.5.2
   Installed ChunkCodecLibZstd ─────────── v1.0.0
   Installed InlineStrings ─────────────── v1.4.5
   Installed Extents ───────────────────── v0.1.6
   Installed RDKitMinimalLib ───────────── v1.2.0
   Installed Cairo_jll ─────────────────── v1.18.5+0
   Installed OrderedCollections ────────── v1.8.1
   Installed SentinelArrays ────────────── v1.4.8
   Installed Graphite2_jll ─────────────── v1.3.15+0
   Installed UnitfulAtomic ─────────────── v1.0.0
   Installed RDKit_jll ─────────────────── v2022.9.5+0
   Installed PreallocationTools ────────── v0.4.34
   Installed FileIO ────────────────────── v1.17.1
   Installed Fontconfig_jll ────────────── v2.17.1+0
   Installed NaNMath ───────────────────── v1.1.3
   Installed ScopedValues ──────────────── v1.5.0
   Installed PhysicalConstants ─────────── v0.2.4
   Installed Graphics ──────────────────── v1.1.3
   Installed libinchi_jll ──────────────── v1.6.0+0
   Installed MsgPack ───────────────────── v1.2.1
   Installed Tables ────────────────────── v1.12.1
   Installed Mendeleev ─────────────────── v1.0.2
   Installed Xorg_libxcb_jll ───────────── v1.17.1+0
   Installed EnumX ─────────────────────── v1.0.5
   Installed InverseFunctions ──────────── v0.1.17
   Installed Jieko ─────────────────────── v0.2.1
   Installed LZO_jll ───────────────────── v2.10.3+0
   Installed Reexport ──────────────────── v1.2.2
   Installed Hyperscript ───────────────── v0.0.5
   Installed Missings ──────────────────── v1.2.0
   Installed Preferences ───────────────── v1.5.0
   Installed TableTraits ───────────────── v1.0.1
   Installed LLVMOpenMP_jll ────────────── v18.1.8+0
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed Crayons ───────────────────── v4.1.1
   Installed Format ────────────────────── v1.3.7
   Installed SortingAlgorithms ─────────── v1.2.2
   Installed boost_jll ─────────────────── v1.76.0+1
   Installed RecursiveArrayTools ───────── v3.39.0
   Installed UnPack ────────────────────── v1.0.2
   Installed ADTypes ───────────────────── v1.18.0
   Installed Inflate ───────────────────── v0.1.5
   Installed AbstractTrees ─────────────── v0.4.5
   Installed URIs ──────────────────────── v1.6.1
   Installed MacroTools ────────────────── v0.5.16
   Installed FillArrays ────────────────── v1.14.0
   Installed DataStructures ────────────── v0.19.3
   Installed Quaternions ───────────────── v0.7.6
   Installed SparseMatrixColorings ─────── v0.4.23
   Installed DelimitedFiles ────────────── v1.9.1
   Installed ArnoldiMethod ─────────────── v0.4.0
   Installed CodecZlib ─────────────────── v0.7.8
   Installed ExprTools ─────────────────── v0.1.10
   Installed Observables ───────────────── v0.5.5
   Installed MakieCore ─────────────────── v0.9.5
   Installed Cairo ─────────────────────── v1.1.1
   Installed Xorg_libXau_jll ───────────── v1.0.13+0
   Installed ConsoleProgressMonitor ────── v0.1.2
   Installed ArrayInterface ────────────── v7.22.0
   Installed DataValueInterfaces ───────── v1.0.0
   Installed Pixman_jll ────────────────── v0.44.2+0
   Installed Libffi_jll ────────────────── v3.4.7+0
   Installed RealDot ───────────────────── v0.1.0
   Installed LoggingExtras ─────────────── v1.2.0
   Installed Expat_jll ─────────────────── v2.7.3+0
   Installed SparseConnectivityTracer ──── v1.1.2
   Installed GPUArraysCore ─────────────── v0.2.0
   Installed libpng_jll ────────────────── v1.6.50+0
   Installed TerminalLoggers ───────────── v0.1.7
   Installed SimpleTraits ──────────────── v0.9.5
   Installed coordgenlibs_jll ──────────── v3.0.2+0
   Installed HTTP ──────────────────────── v1.10.19
   Installed BitFlags ──────────────────── v0.1.9
   Installed Roots ─────────────────────── v2.2.10
   Installed LeftChildRightSiblingTrees ── v0.2.1
   Installed Scratch ───────────────────── v1.3.0
   Installed L_BFGS_B_jll ──────────────── v3.0.1+0
   Installed SimpleBufferStream ────────── v1.2.0
   Installed PooledArrays ──────────────── v1.4.3
   Installed Setfield ──────────────────── v1.1.2
   Installed MetaGraphs ────────────────── v0.8.1
   Installed PDMats ────────────────────── v0.11.36
   Installed WorkerUtilities ───────────── v1.6.1
   Installed OptimizationBase ──────────── v2.14.0
   Installed DocStringExtensions ───────── v0.9.5
   Installed TableOperations ───────────── v1.2.0
   Installed Moshi ─────────────────────── v0.3.7
   Installed CompositionsBase ──────────── v0.1.2
   Installed LBFGSB ────────────────────── v0.4.1
   Installed RelocatableFolders ────────── v1.0.1
   Installed CommonSolve ───────────────── v0.2.4
   Installed BiochemicalVisualization ──── v0.3.2
   Installed DifferentiationInterface ──── v0.7.10
   Installed ConcurrentUtilities ───────── v2.5.0
   Installed BiochemicalAlgorithms ─────── v0.5.5
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed HashArrayMappedTries ──────── v0.2.0
   Installed FunctionWrappersWrappers ──── v0.1.3
   Installed RecipesBase ───────────────── v1.3.4
   Installed MolecularGraph ────────────── v0.19.1
   Installed DataAPI ───────────────────── v1.16.0
   Installed InvertedIndices ───────────── v1.3.1
   Installed SciMLOperators ────────────── v1.9.0
   Installed SciMLStructures ───────────── v1.7.0
   Installed Colors ────────────────────── v0.13.1
   Installed StaticArraysCore ──────────── v1.4.4
   Installed WidgetsBase ───────────────── v0.1.4
   Installed StaticArrays ──────────────── v1.9.15
   Installed ColorTypes ────────────────── v0.12.1
   Installed StringManipulation ────────── v0.4.1
   Installed SciMLPublic ───────────────── v1.0.0
   Installed Requires ──────────────────── v1.3.1
   Installed Glib_jll ──────────────────── v2.86.0+0
   Installed ThreadPools ───────────────── v2.1.1
   Installed FunctionWrappers ──────────── v1.1.3
   Installed JSON ──────────────────────── v0.21.4
   Installed SciMLBase ─────────────────── v2.124.0
   Installed FastClosures ──────────────── v0.3.2
   Installed AutoHashEquals ────────────── v2.2.0
   Installed Parsers ───────────────────── v2.8.3
   Installed PrettyTables ──────────────── v2.4.0
   Installed BioGenerics ───────────────── v0.1.5
   Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0
   Installed WeakRefStrings ────────────── v1.4.2
   Installed Unitful ───────────────────── v1.25.1
   Installed TestItems ─────────────────── v1.0.0
   Installed Bonito ────────────────────── v4.1.9
   Installed JLLWrappers ───────────────── v1.7.1
   Installed Deno_jll ──────────────────── v1.33.4+0
   Installed CSV ───────────────────────── v0.10.15
   Installed DataFrames ────────────────── v1.8.1
   Installed ChunkCodecCore ────────────── v1.0.0
   Installed GeometryBasics ────────────── v0.5.10
   Installed StructTypes ───────────────── v1.11.0
   Installed Pango_jll ─────────────────── v1.56.4+0
   Installed IterTools ─────────────────── v1.10.0
   Installed Accessors ─────────────────── v0.1.42
   Installed Measurements ──────────────── v2.14.1
   Installed Xorg_xtrans_jll ───────────── v1.6.0+0
   Installed FilePathsBase ─────────────── v0.9.24
   Installed Adapt ─────────────────────── v4.4.0
   Installed ConstructionBase ──────────── v1.6.0
   Installed RuntimeGeneratedFunctions ─── v0.5.16
   Installed JLD2 ──────────────────────── v0.6.2
   Installed Graphs ────────────────────── v1.13.1
   Installed Libmount_jll ──────────────── v2.41.2+0
   Installed BioStructures ─────────────── v4.7.0
   Installed ChunkSplitters ────────────── v3.1.2
   Installed ExceptionUnwrapping ───────── v0.1.11
   Installed SymbolicIndexingInterface ─── v0.3.44
   Installed TranscodingStreams ────────── v0.11.3
   Installed CellListMap ───────────────── v0.9.14
   Installed Xorg_libX11_jll ───────────── v1.8.12+0
   Installed Compat ────────────────────── v4.18.1
   Installed EarCut_jll ────────────────── v2.2.4+0
   Installed ProgressLogging ───────────── v0.1.5
   Installed Statistics ────────────────── v1.11.1
   Installed Optimization ──────────────── v4.8.0
   Installed ExproniconLite ────────────── v0.10.14
   Installed PrecompileTools ───────────── v1.3.3
   Installed StringEncodings ───────────── v0.3.7
   Installed ProgressMeter ─────────────── v1.11.0
   Installed MbedTLS ───────────────────── v1.1.9
   Installed OpenSSL ───────────────────── v1.6.0
   Installed GettextRuntime_jll ────────── v0.22.4+0
   Installed FriBidi_jll ───────────────── v1.0.17+0
   Installed JSON3 ─────────────────────── v1.14.3
   Installed BioSymbols ────────────────── v5.2.0
   Installed YAML ──────────────────────── v0.4.15
   Installed ChunkCodecLibZlib ─────────── v1.0.0
   Installed Xorg_libXrender_jll ───────── v0.9.12+0
   Installed Parameters ────────────────── v0.12.3
   Installed SciMLLogging ──────────────── v1.3.1
   Installed FixedPointNumbers ─────────── v0.8.5
   Installed IntervalSets ──────────────── v0.7.11
   Installed Rotations ─────────────────── v1.7.1
   Installed FreeType2_jll ─────────────── v2.13.4+0
   Installed Libiconv_jll ──────────────── v1.18.0+0
   Installed MbedTLS_jll ───────────────── v2.28.10+0
   Installed Xorg_libXext_jll ──────────── v1.3.7+0
  Installing 34 artifacts
   Installed artifact FriBidi         78.9 KiB
   Installed artifact EarCut          80.5 KiB
   Installed artifact Expat           283.3 KiB
   Installed artifact Bzip2           503.5 KiB
   Installed artifact Xorg_libXext    699.9 KiB
   Installed artifact L_BFGS_B        45.2 KiB
   Installed artifact GettextRuntime  543.0 KiB
   Installed artifact libpng          328.4 KiB
   Installed artifact coordgenlibs    303.6 KiB
   Installed artifact Graphite2       120.2 KiB
   Installed artifact FreeType2       1.5 MiB
   Installed artifact Xorg_libXau     36.6 KiB
   Installed artifact MbedTLS         2.2 MiB
   Installed artifact Libiconv        1.9 MiB
   Installed artifact Libffi          44.2 KiB
   Installed artifact Libuuid         3.7 MiB
   Installed artifact Libmount        6.5 MiB
   Installed artifact Cairo           2.2 MiB
   Installed artifact Xorg_libxcb     2.1 MiB
   Installed artifact Xorg_libXdmcp   67.7 KiB
   Installed artifact Fontconfig      984.8 KiB
   Installed artifact libinchi        933.4 KiB
   Installed artifact HarfBuzz        1.7 MiB
   Installed artifact Pixman          372.2 KiB
   Installed artifact Xorg_libXrender 435.9 KiB
   Installed artifact Xorg_xtrans     48.2 KiB
   Installed artifact LZO             208.9 KiB
   Installed artifact LLVMOpenMP      661.6 KiB
   Installed artifact Pango           1.1 MiB
   Installed artifact Xorg_libX11     13.9 MiB
   Installed artifact Glib            7.7 MiB
   Installed artifact Deno            38.5 MiB
   Installed artifact boost           22.1 MiB
   Installed artifact RDKit           56.2 MiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [00dfb448] + BiochemicalVisualization v0.3.2
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [47edcb42] + ADTypes v1.18.0
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.4.0
  [ec485272] + ArnoldiMethod v0.4.0
  [4fba245c] + ArrayInterface v7.22.0
  [15f4f7f2] + AutoHashEquals v2.2.0
  [47718e42] + BioGenerics v0.1.5
  [de9282ab] + BioStructures v4.7.0
  [3c28c6f8] + BioSymbols v5.2.0
  [9d651bdf] + BiochemicalAlgorithms v0.5.5
  [00dfb448] + BiochemicalVisualization v0.3.2
  [d1d4a3ce] + BitFlags v0.1.9
  [824d6782] + Bonito v4.1.9
  [336ed68f] + CSV v0.10.15
  [159f3aea] + Cairo v1.1.1
  [49dc2e85] + Calculus v0.5.2
  [69e1c6dd] + CellListMap v0.9.14
  [0b6fb165] + ChunkCodecCore v1.0.0
  [4c0bbee4] + ChunkCodecLibZlib v1.0.0
  [55437552] + ChunkCodecLibZstd v1.0.0
  [ae650224] + ChunkSplitters v3.1.2
  [944b1d66] + CodecZlib v0.7.8
  [3da002f7] + ColorTypes v0.12.1
  [5ae59095] + Colors v0.13.1
  [38540f10] + CommonSolve v0.2.4
  [34da2185] + Compat v4.18.1
  [a33af91c] + CompositionsBase v0.1.2
  [f0e56b4a] + ConcurrentUtilities v2.5.0
  [88cd18e8] + ConsoleProgressMonitor v0.1.2
  [187b0558] + ConstructionBase v1.6.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
  [864edb3b] + DataStructures v0.19.3
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [a0c0ee7d] + DifferentiationInterface v0.7.10
  [ffbed154] + DocStringExtensions v0.9.5
  [4e289a0a] + EnumX v1.0.5
  [460bff9d] + ExceptionUnwrapping v0.1.11
  [e2ba6199] + ExprTools v0.1.10
  [55351af7] + ExproniconLite v0.10.14
  [411431e0] + Extents v0.1.6
  [9aa1b823] + FastClosures v0.3.2
  [5789e2e9] + FileIO v1.17.1
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.14.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
  [069b7b12] + FunctionWrappers v1.1.3
  [77dc65aa] + FunctionWrappersWrappers v0.1.3
  [46192b85] + GPUArraysCore v0.2.0
  [5c1252a2] + GeometryBasics v0.5.10
  [a2bd30eb] + Graphics v1.1.3
  [86223c79] + Graphs v1.13.1
  [cd3eb016] + HTTP v1.10.19
  [076d061b] + HashArrayMappedTries v0.2.0
  [47d2ed2b] + Hyperscript v0.0.5
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.5
  [8197267c] + IntervalSets v0.7.11
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [033835bb] + JLD2 v0.6.2
  [692b3bcd] + JLLWrappers v1.7.1
⌅ [682c06a0] + JSON v0.21.4
  [0f8b85d8] + JSON3 v1.14.3
  [ae98c720] + Jieko v0.2.1
  [5be7bae1] + LBFGSB v0.4.1
  [b964fa9f] + LaTeXStrings v1.4.0
  [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1
  [e6f89c97] + LoggingExtras v1.2.0
  [1914dd2f] + MacroTools v0.5.16
⌅ [20f20a25] + MakieCore v0.9.5
  [739be429] + MbedTLS v1.1.9
  [eff96d63] + Measurements v2.14.1
  [c116f080] + Mendeleev v1.0.2
  [626554b9] + MetaGraphs v0.8.1
  [e1d29d7a] + Missings v1.2.0
⌅ [6c89ec66] + MolecularGraph v0.19.1
  [2e0e35c7] + Moshi v0.3.7
  [99f44e22] + MsgPack v1.2.1
  [77ba4419] + NaNMath v1.1.3
  [510215fc] + Observables v0.5.5
  [4d8831e6] + OpenSSL v1.6.0
⌅ [7f7a1694] + Optimization v4.8.0
⌅ [bca83a33] + OptimizationBase v2.14.0
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.36
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.3
  [5ad8b20f] + PhysicalConstants v0.2.4
  [2dfb63ee] + PooledArrays v1.4.3
  [d236fae5] + PreallocationTools v0.4.34
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  [21216c6a] + Preferences v1.5.0
⌅ [08abe8d2] + PrettyTables v2.4.0
  [33c8b6b6] + ProgressLogging v0.1.5
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⌃ [2efcf032] + SymbolicIndexingInterface v0.3.44
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  [36c8627f] + Pango_jll v1.56.4+0
⌅ [30392449] + Pixman_jll v0.44.2+0
  [03d1d220] + RDKit_jll v2022.9.5+0
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  [1082639a] + Xorg_libXext_jll v1.3.7+0
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  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
⌅ [28df3c45] + boost_jll v1.76.0+1
  [f6050b86] + coordgenlibs_jll v3.0.2+0
  [172afb32] + libinchi_jll v1.6.0+0
  [b53b4c65] + libpng_jll v1.6.50+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.9.9
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.67.1+0
  [3f19e933] + p7zip_jll v17.6.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 39.25s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   4194.6 ms  ✓ MacroTools
   1631.9 ms  ✓ InlineStrings
    799.7 ms  ✓ Reexport
   1096.6 ms  ✓ ConstructionBase
    798.5 ms  ✓ DataValueInterfaces
   2313.5 ms  ✓ Format
   1053.9 ms  ✓ Observables
   1301.6 ms  ✓ Calculus
   1146.4 ms  ✓ IterTools
   1060.1 ms  ✓ IntervalSets
   1037.4 ms  ✓ Inflate
    775.4 ms  ✓ CommonSolve
   1251.0 ms  ✓ TranscodingStreams
    866.7 ms  ✓ LaTeXStrings
   1012.7 ms  ✓ ChunkCodecCore
    741.2 ms  ✓ TestItems
   1093.0 ms  ✓ Statistics
    944.3 ms  ✓ StaticArraysCore
    892.1 ms  ✓ ChunkSplitters
    932.7 ms  ✓ AutoHashEquals
    856.0 ms  ✓ SimpleBufferStream
    959.7 ms  ✓ DataAPI
    932.9 ms  ✓ SciMLPublic
   3670.7 ms  ✓ ExproniconLite
    784.9 ms  ✓ RealDot
   1239.9 ms  ✓ URIs
    871.7 ms  ✓ InvertedIndices
    965.8 ms  ✓ InverseFunctions
    821.9 ms  ✓ CompositionsBase
    924.1 ms  ✓ BitFlags
   1262.7 ms  ✓ AbstractTrees
    928.3 ms  ✓ EnumX
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    804.8 ms  ✓ UnPack
    966.3 ms  ✓ Extents
   1206.1 ms  ✓ OrderedCollections
   1449.0 ms  ✓ FunctionWrappers
    875.3 ms  ✓ HashArrayMappedTries
   1317.1 ms  ✓ ADTypes
   1294.1 ms  ✓ ProgressLogging
   1098.0 ms  ✓ DocStringExtensions
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   1787.0 ms  ✓ Crayons
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    964.5 ms  ✓ NaNMath
   1147.5 ms  ✓ Requires
   1742.5 ms  ✓ ConcurrentUtilities
   1226.4 ms  ✓ SuiteSparse
   1508.6 ms  ✓ MsgPack
   1314.6 ms  ✓ Scratch
  31460.0 ms  ✓ Unitful
   2759.1 ms  ✓ SentinelArrays
   1559.5 ms  ✓ StructTypes
   1137.2 ms  ✓ LoggingExtras
   1769.9 ms  ✓ ProgressMeter
   1141.2 ms  ✓ Compat
   1122.7 ms  ✓ Preferences
   1144.5 ms  ✓ Hyperscript
   1631.4 ms  ✓ ExceptionUnwrapping
   3088.5 ms  ✓ SimpleTraits
    819.8 ms  ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt
    968.1 ms  ✓ WidgetsBase
   1280.0 ms  ✓ Measurements
    766.4 ms  ✓ IntervalSets → IntervalSetsRandomExt
    748.9 ms  ✓ ConstructionBase → ConstructionBaseIntervalSetsExt
    915.7 ms  ✓ BioGenerics
    987.6 ms  ✓ CodecZlib
   1005.1 ms  ✓ ChunkCodecLibZlib
   1091.8 ms  ✓ ChunkCodecLibZstd
   1293.6 ms  ✓ Statistics → SparseArraysExt
   3645.9 ms  ✓ FixedPointNumbers
    758.5 ms  ✓ IntervalSets → IntervalSetsStatisticsExt
    952.1 ms  ✓ Missings
   1017.1 ms  ✓ PooledArrays
   3175.2 ms  ✓ Jieko
   1049.4 ms  ✓ Quaternions
    847.9 ms  ✓ InverseFunctions → InverseFunctionsDatesExt
   1629.4 ms  ✓ InverseFunctions → InverseFunctionsTestExt
    814.3 ms  ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt
   3949.6 ms  ✓ OpenSSL
    999.8 ms  ✓ LeftChildRightSiblingTrees
   1735.8 ms  ✓ FillArrays → FillArraysSparseArraysExt
    851.3 ms  ✓ FillArrays → FillArraysStatisticsExt
    688.5 ms  ✓ RuntimeGeneratedFunctions
    730.6 ms  ✓ Parameters
   2592.1 ms  ✓ DataStructures
    609.2 ms  ✓ FunctionWrappersWrappers
    756.1 ms  ✓ ScopedValues
    772.4 ms  ✓ ADTypes → ADTypesConstructionBaseExt
   1728.4 ms  ✓ DifferentiationInterface
    727.3 ms  ✓ TableTraits
    923.8 ms  ✓ Adapt
   9284.1 ms  ✓ FileIO
   1939.2 ms  ✓ PDMats
   1106.2 ms  ✓ RelocatableFolders
   2028.3 ms  ✓ Unitful → ConstructionBaseUnitfulExt
   2251.0 ms  ✓ Unitful → PrintfExt
   1938.2 ms  ✓ Unitful → InverseFunctionsUnitfulExt
    899.0 ms  ✓ ConsoleProgressMonitor
    842.8 ms  ✓ Compat → CompatLinearAlgebraExt
    974.7 ms  ✓ PrecompileTools
   1172.0 ms  ✓ JLLWrappers
   1258.7 ms  ✓ SciMLLogging
   2956.5 ms  ✓ Setfield
   2040.8 ms  ✓ Measurements → MeasurementsUnitfulExt
   2587.4 ms  ✓ ColorTypes
  15855.1 ms  ✓ Moshi
   5156.0 ms  ✓ Accessors
   1925.1 ms  ✓ TerminalLoggers
   8849.9 ms  ✓ SparseConnectivityTracer
   1133.1 ms  ✓ SortingAlgorithms
   1325.5 ms  ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt
   1841.5 ms  ✓ Tables
   1191.7 ms  ✓ ArrayInterface
   1269.6 ms  ✓ Adapt → AdaptSparseArraysExt
   1195.0 ms  ✓ GPUArraysCore
   1521.4 ms  ✓ FillArrays → FillArraysPDMatsExt
   8776.0 ms  ✓ UnitfulAtomic
   2023.0 ms  ✓ FilePathsBase
   2532.6 ms  ✓ BioSymbols
   3023.8 ms  ✓ StringManipulation
  13474.3 ms  ✓ StaticArrays
   2869.5 ms  ✓ RecipesBase
  16577.3 ms  ✓ Parsers
  11628.1 ms  ✓ SparseMatrixColorings
  45944.2 ms  ✓ JLD2
   1446.0 ms  ✓ Libffi_jll
   1532.9 ms  ✓ LZO_jll
   1506.8 ms  ✓ EarCut_jll
   1431.1 ms  ✓ Bzip2_jll
   1474.6 ms  ✓ libinchi_jll
   1217.3 ms  ✓ Xorg_xtrans_jll
   1491.3 ms  ✓ boost_jll
   1450.8 ms  ✓ libpng_jll
   1438.1 ms  ✓ coordgenlibs_jll
   1421.9 ms  ✓ L_BFGS_B_jll
   1450.3 ms  ✓ Libmount_jll
   1391.9 ms  ✓ Libuuid_jll
   1410.2 ms  ✓ Deno_jll
   1445.4 ms  ✓ FriBidi_jll
   1454.6 ms  ✓ Xorg_libXau_jll
   1397.7 ms  ✓ Graphite2_jll
   1391.7 ms  ✓ LLVMOpenMP_jll
   1447.3 ms  ✓ Libiconv_jll
   1426.8 ms  ✓ MbedTLS_jll
   1400.9 ms  ✓ Xorg_libXdmcp_jll
   1456.1 ms  ✓ Expat_jll
   1295.1 ms  ✓ ColorTypes → StyledStringsExt
   7868.9 ms  ✓ Colors
   1691.2 ms  ✓ Accessors → TestExt
   2510.1 ms  ✓ Accessors → IntervalSetsExt
   2440.9 ms  ✓ Accessors → LinearAlgebraExt
   2022.0 ms  ✓ Accessors → UnitfulExt
   2963.6 ms  ✓ SparseConnectivityTracer → SparseConnectivityTracerNaNMathExt
   1840.1 ms  ✓ DifferentiationInterface → DifferentiationInterfaceSparseConnectivityTracerExt
   2114.6 ms  ✓ TableOperations
    778.9 ms  ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt
   1302.3 ms  ✓ ArrayInterface → ArrayInterfaceSparseArraysExt
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    854.9 ms  ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt
    854.4 ms  ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt
  21307.4 ms  ✓ Mendeleev
   2704.4 ms  ✓ FilePathsBase → FilePathsBaseTestExt
   1002.8 ms  ✓ FilePathsBase → FilePathsBaseMmapExt
  27346.0 ms  ✓ PrettyTables
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   1416.8 ms  ✓ StaticArrays → StaticArraysStatisticsExt
   1500.5 ms  ✓ ConstructionBase → ConstructionBaseStaticArraysExt
   5267.6 ms  ✓ Rotations
   1427.6 ms  ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt
   1401.0 ms  ✓ Adapt → AdaptStaticArraysExt
   1538.2 ms  ✓ Accessors → StaticArraysExt
   2022.6 ms  ✓ ThreadPools
   1316.6 ms  ✓ IntervalSets → IntervalSetsRecipesBaseExt
   1279.9 ms  ✓ Measurements → MeasurementsRecipesBaseExt
  13389.9 ms  ✓ BioStructures
  13746.6 ms  ✓ JSON3
   3898.9 ms  ✓ JSON
    974.4 ms  ✓ InlineStrings → ParsersExt
   1821.9 ms  ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt
   6146.1 ms  ✓ JLD2 → UnPackExt
  23071.5 ms  ✓ GeometryBasics
   1393.0 ms  ✓ FreeType2_jll
    996.0 ms  ✓ LBFGSB
   1397.1 ms  ✓ Pixman_jll
   1110.0 ms  ✓ StringEncodings
   1663.0 ms  ✓ GettextRuntime_jll
   2040.6 ms  ✓ MbedTLS
   1617.3 ms  ✓ Xorg_libxcb_jll
   1417.5 ms  ✓ Graphics
   2833.5 ms  ✓ SparseMatrixColorings → SparseMatrixColoringsColorsExt
   6754.6 ms  ✓ Roots
   4763.3 ms  ✓ SciMLOperators
   3675.0 ms  ✓ SymbolicIndexingInterface
   1933.9 ms  ✓ PreallocationTools → PreallocationToolsSparseConnectivityTracerExt
  80108.5 ms  ✓ DataFrames
   9515.7 ms  ✓ Graphs
  24699.2 ms  ✓ CellListMap
   1799.6 ms  ✓ Rotations → RotationsRecipesBaseExt
   2572.7 ms  ✓ WeakRefStrings
   9722.0 ms  ✓ MakieCore
   1451.3 ms  ✓ RDKit_jll
   1572.0 ms  ✓ Fontconfig_jll
   2557.1 ms  ✓ YAML
   1451.3 ms  ✓ Glib_jll
  23612.2 ms  ✓ HTTP
   1460.5 ms  ✓ Xorg_libX11_jll
   2366.2 ms  ✓ Roots → RootsUnitfulExt
   1012.3 ms  ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt
   1586.9 ms  ✓ SciMLOperators → SciMLOperatorsSparseArraysExt
   2010.1 ms  ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt
   3346.9 ms  ✓ RecursiveArrayTools
   5939.5 ms  ✓ BioStructures → BioStructuresDataFramesExt
   7607.9 ms  ✓ MetaGraphs
  27927.2 ms  ✓ CSV
   1226.2 ms  ✓ RDKitMinimalLib
   6911.7 ms  ✓ FileIO → HTTPExt
ERROR: LoadError: ArgumentError: Cannot load (`using/import`) module SHA into module Bonito in package Bonito
because package Bonito does not have SHA in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /home/pkgeval/.julia/environments/v1.14/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have Bonito checked out for development and have
  added SHA as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with Bonito
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2488 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [4] require
    @ ./loading.jl:2444 [inlined]
  [5] eval_import_path
    @ ./module.jl:36 [inlined]
  [6] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
  [7] _eval_using
    @ ./module.jl:137 [inlined]
  [8] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
  [9] top-level scope
    @ ~/.julia/packages/Bonito/7NFZv/src/Bonito.jl:18
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [15] include_string
    @ ./loading.jl:3004 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [17] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Bonito/7NFZv/src/Bonito.jl:1
in expression starting at stdin:5

Precompilation completed after 792.06s


################################################################################
# Loading
#

Loading BiochemicalVisualization...
ERROR: LoadError: ArgumentError: Cannot load (`using/import`) module SHA into module Bonito in package Bonito
because package Bonito does not have SHA in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /home/pkgeval/.julia/environments/v1.14/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have Bonito checked out for development and have
  added SHA as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with Bonito
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2488 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [4] require
    @ ./loading.jl:2444 [inlined]
  [5] eval_import_path
    @ ./module.jl:36 [inlined]
  [6] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
  [7] _eval_using
    @ ./module.jl:137 [inlined]
  [8] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
  [9] top-level scope
    @ ~/.julia/packages/Bonito/7NFZv/src/Bonito.jl:18
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [15] include_string
    @ ./loading.jl:3004 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [17] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Bonito/7NFZv/src/Bonito.jl:1
in expression starting at stdin:5
ERROR: LoadError: ArgumentError: Cannot load (`using/import`) module SHA into module Bonito in package Bonito
because package Bonito does not have SHA in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /home/pkgeval/.julia/environments/v1.14/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have Bonito checked out for development and have
  added SHA as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with Bonito
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2488 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [4] require
    @ ./loading.jl:2444 [inlined]
  [5] eval_import_path
    @ ./module.jl:36 [inlined]
  [6] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
  [7] _eval_using
    @ ./module.jl:137 [inlined]
  [8] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
  [9] top-level scope
    @ ~/.julia/packages/Bonito/7NFZv/src/Bonito.jl:18
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [11] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [15] include_string
    @ ./loading.jl:3004 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [17] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Bonito/7NFZv/src/Bonito.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ Bonito
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

Bonito 
Failed to precompile Bonito [824d6782-a2ef-11e9-3a09-e5662e0c26f8] to "/home/pkgeval/.julia/compiled/v1.14/Bonito/jl_LkgVUN" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/BiochemicalVisualization/dGCps/src/BiochemicalVisualization.jl:1

Loading failed after 231.89s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using BiochemicalVisualization'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 1101.08s: package fails to precompile