Package evaluation to test MolecularEvolution on Julia 1.14.0-DEV.2226 (797a5ef2b0*) started at 2026-05-24T03:51:47.021 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.97s ################################################################################ # Installation # Installing MolecularEvolution... Resolving package versions... Installed Rmath_jll ─────────────── v0.5.1+0 Installed AliasTables ───────────── v1.1.3 Installed FillArrays ────────────── v1.16.0 Installed DataAPI ───────────────── v1.16.0 Installed DataStructures ────────── v0.19.4 Installed OrderedCollections ────── v1.8.1 Installed StatsBase ─────────────── v0.34.10 Installed HypergeometricFunctions ─ v0.3.28 Installed StatsAPI ──────────────── v1.8.0 Installed Statistics ────────────── v1.11.1 Installed OpenSpecFun_jll ───────── v0.5.6+0 Installed LogExpFunctions ───────── v0.3.29 Installed IrrationalConstants ───── v0.2.6 Installed Requires ──────────────── v1.3.1 Installed QuadGK ────────────────── v2.11.3 Installed Rmath ─────────────────── v0.9.0 Installed StatsFuns ─────────────── v1.5.2 Installed PtrArrays ─────────────── v1.4.0 Installed Reexport ──────────────── v1.2.2 Installed Missings ──────────────── v1.2.0 Installed SpecialFunctions ──────── v2.7.2 Installed Preferences ───────────── v1.5.2 Installed Distributions ─────────── v0.25.125 Installed PDMats ────────────────── v0.11.37 Installed DocStringExtensions ───── v0.9.5 Installed JLLWrappers ───────────── v1.8.0 Installed SortingAlgorithms ─────── v1.2.2 Installed MolecularEvolution ────── v0.2.7 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [9f975960] + MolecularEvolution v0.2.7 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.4 [31c24e10] + Distributions v0.25.125 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [9f975960] + MolecularEvolution v0.2.7 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.7.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 8.04s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 5.6 s ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 0.5 s ✓ Reexport 1.0 s ✓ Statistics 0.9 s ✓ DataAPI 2.3 s ✓ IrrationalConstants 0.6 s ✓ StatsAPI 151.1 s ✓ OrderedCollections 1.1 s ✓ DocStringExtensions 292.2 s ✓ StringViews 108.5 s ✓ FillArrays 37.7 s ✓ PtrArrays 57.8 s ✓ TranscodingStreams 1.1 s ✓ Requires 42.0 s ✓ PDMats 2.2 s ✓ Preferences 41.3 s ✓ Statistics → SparseArraysExt 65.4 s ✓ Missings 180.4 s ✓ DataStructures 1.6 s ✓ LogExpFunctions 73.8 s ✓ FillArrays → FillArraysSparseArraysExt 39.2 s ✓ FillArrays → FillArraysStatisticsExt 39.8 s ✓ AliasTables 41.7 s ✓ BioGenerics 73.0 s ✓ FillArrays → FillArraysPDMatsExt 2.8 s ✓ JLLWrappers 2.4 s ✓ PrecompileTools 38.3 s ✓ SortingAlgorithms 41.2 s ✓ QuadGK 2.9 s ✓ Rmath_jll 3.0 s ✓ OpenSpecFun_jll ┌ Info: JuliaLowering threw given input: │ code = │ :(#= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =# @generated function fneg(x::T, ::F = nothing) where {T <: LT{<:FloatingTypes}, F <: FPFlags} │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =# │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:187 =# │ fpflags = fp_str(F) │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:188 =# │ s = "%2 = fneg $(fpflags) $(llvm_type(T)) %0\nret $(llvm_type(T)) %2\n" │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:192 =# │ return $(Expr(:quote, quote │ $(Expr(:$, :(Expr(:meta, :inline)))) │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:194 =# │ Base.llvmcall($(Expr(:$, :s)), T, Tuple{T}, x) │ end)) │ end) │ st0 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ [macrocall] │ │ @generated :: Identifier │ │ :(#= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =#) :: Value │ │ [function] │ │ [where] │ │ [call] │ │ fneg :: Identifier │ │ [::] │ │ x :: Identifier │ │ T :: Identifier │ │ [kw] │ │ [::] │ │ F :: Identifier │ │ nothing :: Identifier │ │ [<:] │ │ T :: Identifier │ │ [curly] │ │ LT :: Identifier │ │ [<:] │ │ FloatingTypes :: Identifier │ │ [<:] │ │ F :: Identifier │ │ FPFlags :: Identifier │ │ [block] │ │ [=] │ │ fpflags :: Identifier │ │ [call] │ │ fp_str :: Identifier │ │ F :: Identifier │ │ [=] │ │ s :: Identifier │ │ [string] │ │ "%2 = fneg " :: Value │ │ fpflags :: Identifier │ │ " " :: Value │ │ [call] │ │ llvm_type :: Identifier │ │ T :: Identifier │ │ " %0\nret " :: Value │ │ [call] │ │ llvm_type :: Identifier │ │ T :: Identifier │ │ " %2\n" :: Value │ │ [return] │ │ [quote] │ │ [block] │ │ [$] │ │ [call] │ │ Expr :: Identifier │ │ [inert] │ │ meta :: Identifier │ │ [inert] │ │ inline :: Identifier │ │ [call] │ │ [.] │ │ Base :: Identifier │ │ [inert] │ │ llvmcall :: Identifier │ │ [$] │ │ s :: Identifier │ │ T :: Identifier │ │ [curly] │ │ Tuple :: Identifier │ │ T :: Identifier │ │ x :: Identifier │ │ │ st1 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ [function] │ jl_source=L67 │ [where] │ scope_layer=1 │ [call] │ macro_source=65,scope_layer=1 │ fneg :: Identifier │ macro_source=65,scope_layer=1 │ [::] │ macro_source=65,scope_layer=1 │ x :: Identifier │ macro_source=65,scope_layer=1 │ T :: Identifier │ macro_source=65,scope_layer=1 │ [kw] │ macro_source=65,scope_layer=1 │ [::] │ macro_source=65,scope_layer=1 │ F :: Identifier │ macro_source=65,scope_layer=1 │ nothing :: Identifier │ macro_source=65,scope_layer=1 │ [<:] │ scope_layer=1 │ T :: Identifier │ macro_source=65,scope_layer=1 │ [curly] │ scope_layer=1 │ LT :: Identifier │ macro_source=65,scope_layer=1 │ [<:] │ scope_layer=1 │ FloatingTypes :: Identifier │ macro_source=65,scope_layer=1 │ [<:] │ scope_layer=1 │ F :: Identifier │ macro_source=65,scope_layer=1 │ FPFlags :: Identifier │ macro_source=65,scope_layer=1 │ [block] │ jl_source=L67 │ [if] │ jl_source=L67 │ [generated] │ macro_source=65,jl_source=L67 │ [block] │ scope_layer=1 │ [=] │ macro_source=65,scope_layer=1 │ fpflags :: Identifier │ macro_source=65,scope_layer=1 │ [call] │ macro_source=65,scope_layer=1 │ fp_str :: Identifier │ macro_source=65,scope_layer=1 │ F :: Identifier │ macro_source=65,scope_layer=1 │ [=] │ macro_source=65,scope_layer=1 │ s :: Identifier │ macro_source=65,scope_layer=1 │ [string] │ macro_source=65,scope_layer=1 │ "%2 = fneg " :: Value │ macro_source=65,scope_layer=1 │ fpflags :: Identifier │ macro_source=65,scope_layer=1 │ " " :: Value │ macro_source=65,scope_layer=1 │ [call] │ macro_source=65,scope_layer=1 │ llvm_type :: Identifier │ macro_source=65,scope_layer=1 │ T :: Identifier │ macro_source=65,scope_layer=1 │ " %0\nret " :: Value │ macro_source=65,scope_layer=1 │ [call] │ macro_source=65,scope_layer=1 │ llvm_type :: Identifier │ macro_source=65,scope_layer=1 │ T :: Identifier │ macro_source=65,scope_layer=1 │ " %2\n" :: Value │ macro_source=65,scope_layer=1 │ [return] │ scope_layer=1 │ [call] │ jl_source=L67 │ Base.JuliaLowering.interpolate_ast :: Value │ jl_source=L67 │ Expr :: Value │ jl_source=L67 │ [inert] │ jl_source=L67 │ [block] │ │ [$] │ │ [call] │ │ Expr :: Identifier │ │ [inert] │ │ meta :: Identifier │ │ [inert] │ │ inline :: Identifier │ │ [call] │ │ [.] │ │ Base :: Identifier │ │ [inert] │ │ llvmcall :: Identifier │ │ [$] │ │ s :: Identifier │ │ T :: Identifier │ │ [curly] │ │ Tuple :: Identifier │ │ T :: Identifier │ │ x :: Identifier │ │ [tuple] │ jl_source=L31 │ [call] │ scope_layer=1 │ Expr :: Identifier │ macro_source=65,scope_layer=1 │ [inert] │ │ meta :: Identifier │ │ [inert] │ │ inline :: Identifier │ │ [tuple] │ jl_source=L31 │ s :: Identifier │ macro_source=65,scope_layer=1 │ [block] │ jl_source=L67 │ [meta] │ jl_source=L67 │ generated_only :: Identifier │ scope_layer=2,jl_source=L67 │ [return] │ macro_source=65,jl_source=L67 │ nothing :: Value │ macro_source=65,jl_source=L67 │ │ file = "/home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl" │ line = 186 └ mod = SIMD.Intrinsics ERROR: LoadError: internal lowering bug: #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =# - `jl_assert(!(haskey(ssa_rewrites, lhs_id)), _)`: multiple assignments to ssavalue Expression:  (= #₁ (call core.TypeVar :#T1 #₆₅/FloatingTypes)) Containing expressions:  (= #₁ (call core.TypeVar :#T1 #₆₅/FloatingTypes))  Detailed provenance:  (= #₁ (call core.TypeVar :#T1 #₆₅/FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:366 =#  └─ (= #₁ (call core.TypeVar :#T1 #₉/FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/closure_conversion.jl:197 =#  └─ (= #₁ (call core.TypeVar :#T1 #₉/FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 FloatingTypes))  └─ (call core.TypeVar :#T1 FloatingTypes) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3025 =#  └─ (<: FloatingTypes)  └─ (<: FloatingTypes)  └─ (<: FloatingTypes)  ├─ (<: FloatingTypes)  │ └─ @ /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186  └─ (macrocall @generated :(#= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =#) (function (where (call fneg (:: x T) (kw (:: F) nothing)) (<: T (curly LT (<: FloatingTypes))) (<: F FPFlags)) (block (= fpflags (call fp_str F)) (= s (string "%2 = fneg " fpflags " " (call llvm_type T) " %0\nret " (call llvm_type T) " %2\n")) (return (quote (block ($ (call Expr (inert meta) (inert inline))) (call (. Base (inert llvmcall)) ($ s) T (curly Tuple T) x)))))))  └─ @ /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186  Stacktrace:  [1] iterate(A::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}})  @ Base /source/usr/share/julia/JuliaLowering/src/ast.jl:23 [inlined]  [2] renumber_body(ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, input_code::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, slot_rewrites::Dict{Int64, Int64})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1106  [3] compile_lambda(outer_ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1223  [4] linearize_ir(ctx::Base.JuliaLowering.ClosureConversionCtx{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1253  [5] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:33  [6] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [7] top-level scope  @ ~/.julia/packages/SIMD/UiGbs/src/SIMD.jl:23  [8] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [10] top-level scope  @ stdin:5  [11] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [13] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [14] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [15] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:2 in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/SIMD.jl:1 in expression starting at stdin:5 ✗ SIMD ERROR: LoadError: Creating a new global in closed module `IrrationalConstants` (`Mad_constant`) breaks incremental compilation because the side effects will not be permanent. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/StatsBase/lRQEN/src/scalarstats.jl:527  [2] macro expansion  @ ~/.julia/packages/IrrationalConstants/RokwY/src/macro.jl:107 [inlined]  [3] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [4] top-level scope  @ ~/.julia/packages/StatsBase/lRQEN/src/StatsBase.jl:251  [5] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [6] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [7] top-level scope  @ stdin:5  [8] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [10] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [11] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [12] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/StatsBase/lRQEN/src/scalarstats.jl:527 in expression starting at /home/pkgeval/.julia/packages/StatsBase/lRQEN/src/StatsBase.jl:1 in expression starting at stdin:5 ✗ StatsBase 2.8 s ✓ Rmath 77.6 s ✓ SpecialFunctions ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("fdea26ae-647d-5447-a871-4b548cad5224"), "SIMD") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/Automa/EyNRt/src/Automa.jl:4  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/Automa/EyNRt/src/Automa.jl:1 in expression starting at stdin:5 ✗ Automa ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/PDMats/RK55S/ext/StatsBaseExt.jl:6  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/PDMats/RK55S/ext/StatsBaseExt.jl:1 in expression starting at stdin:5 ✗ PDMats → StatsBaseExt 40.6 s ✓ HypergeometricFunctions ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("67c07d97-cdcb-5c2c-af73-a7f9c32a568b"), "Automa") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(imported::Bool, to::Module, from::Expr, paths::Expr)  @ Base ./module.jl:101  [11] eval_import(imported::Bool, to::Module, from::Expr, paths::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/FASTX/KGKFv/src/FASTX.jl:4  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/FASTX/KGKFv/src/FASTX.jl:1 in expression starting at stdin:5 ✗ FASTX 40.3 s ✓ StatsFuns ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/Distributions/PVuFU/src/Distributions.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/Distributions/PVuFU/src/Distributions.jl:1 in expression starting at stdin:5 ✗ Distributions ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("31c24e10-a181-5473-b8eb-7969acd0382f"), "Distributions") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/MolecularEvolution/rRKnS/src/MolecularEvolution.jl:12  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/MolecularEvolution/rRKnS/src/MolecularEvolution.jl:1 in expression starting at stdin:5 ✗ MolecularEvolution ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("31c24e10-a181-5473-b8eb-7969acd0382f"), "Distributions") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/Distributions/PVuFU/ext/DistributionsTestExt.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/Distributions/PVuFU/ext/DistributionsTestExt.jl:1 in expression starting at stdin:5 ✗ Distributions → DistributionsTestExt 33 dependencies successfully precompiled in 1748 seconds. 17 already precompiled. Precompilation completed after 1779.25s ################################################################################ # Testing # Testing MolecularEvolution Status `/tmp/jl_hAyBRV/Project.toml` ⌃ [c2308a5c] FASTX v2.1.5 [9f975960] MolecularEvolution v0.2.7 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_hAyBRV/Manifest.toml` [66dad0bd] AliasTables v1.1.3 ⌃ [67c07d97] Automa v1.0.3 ⌃ [47718e42] BioGenerics v0.1.4 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.4 [31c24e10] Distributions v0.25.125 [ffbed154] DocStringExtensions v0.9.5 ⌃ [c2308a5c] FASTX v2.1.5 [1a297f60] FillArrays v1.16.0 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.8.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [9f975960] MolecularEvolution v0.2.7 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 ⌃ [aea7be01] PrecompileTools v1.2.1 ⌃ [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 ⌃ [354b36f9] StringViews v1.3.3 ⌅ [3bb67fe8] TranscodingStreams v0.10.7 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: Creating a new global in closed module `IrrationalConstants` (`Mad_constant`) breaks incremental compilation because the side effects will not be permanent. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/StatsBase/lRQEN/src/scalarstats.jl:527  [2] macro expansion  @ ~/.julia/packages/IrrationalConstants/RokwY/src/macro.jl:107 [inlined]  [3] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [4] top-level scope  @ ~/.julia/packages/StatsBase/lRQEN/src/StatsBase.jl:251  [5] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [6] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [7] top-level scope  @ stdin:5  [8] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [10] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [11] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [12] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/StatsBase/lRQEN/src/scalarstats.jl:527 in expression starting at /home/pkgeval/.julia/packages/StatsBase/lRQEN/src/StatsBase.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/PDMats/RK55S/ext/StatsBaseExt.jl:6  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/PDMats/RK55S/ext/StatsBaseExt.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/Distributions/PVuFU/src/Distributions.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/Distributions/PVuFU/src/Distributions.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("31c24e10-a181-5473-b8eb-7969acd0382f"), "Distributions") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/MolecularEvolution/rRKnS/src/MolecularEvolution.jl:12  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/MolecularEvolution/rRKnS/src/MolecularEvolution.jl:1 in expression starting at stdin:5 4 dependencies had output during precompilation: ┌ Distributions │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2818 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2672 │ [4] macro expansion │ @ ./loading.jl:2599 [inlined] │ [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String) │ @ Base ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2563 │ [7] require │ @ ./loading.jl:2539 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base ./module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base ./module.jl:137 [inlined] │ [11] eval_using(to::Module, path::Expr) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207 │ [12] top-level scope │ @ ~/.julia/packages/Distributions/PVuFU/src/Distributions.jl:3 │ [13] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [15] top-level scope │ @ stdin:5 │ [16] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [18] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [19] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [20] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/Distributions/PVuFU/src/Distributions.jl:1 │ in expression starting at stdin:5 └ ┌ PDMats → StatsBaseExt │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2818 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2672 │ [4] macro expansion │ @ ./loading.jl:2599 [inlined] │ [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String) │ @ Base ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2563 │ [7] require │ @ ./loading.jl:2539 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base ./module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 │ [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195 │ [12] top-level scope │ @ ~/.julia/packages/PDMats/RK55S/ext/StatsBaseExt.jl:6 │ [13] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [15] top-level scope │ @ stdin:5 │ [16] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [18] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [19] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [20] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/PDMats/RK55S/ext/StatsBaseExt.jl:1 │ in expression starting at stdin:5 └ ┌ StatsBase │ ERROR: LoadError: Creating a new global in closed module `IrrationalConstants` (`Mad_constant`) breaks incremental compilation because the side effects will not be permanent. │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/StatsBase/lRQEN/src/scalarstats.jl:527 │ [2] macro expansion │ @ ~/.julia/packages/IrrationalConstants/RokwY/src/macro.jl:107 [inlined] │ [3] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:327 │ [4] top-level scope │ @ ~/.julia/packages/StatsBase/lRQEN/src/StatsBase.jl:251 │ [5] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [6] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [7] top-level scope │ @ stdin:5 │ [8] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [10] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [11] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [12] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/StatsBase/lRQEN/src/scalarstats.jl:527 │ in expression starting at /home/pkgeval/.julia/packages/StatsBase/lRQEN/src/StatsBase.jl:1 │ in expression starting at stdin:5 └ ┌ MolecularEvolution │ [Output was shown above] └ ERROR: LoadError: The following 4 packages failed to precompile: Distributions Failed to precompile Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] to "/home/pkgeval/.julia/compiled/v1.14/Distributions/jl_bxkxRp" (ProcessExited(1)). PDMats → StatsBaseExt Failed to precompile StatsBaseExt [8182515f-4554-5253-aa88-b3c276c4d661] to "/home/pkgeval/.julia/compiled/v1.14/StatsBaseExt/jl_ocJlUL" (ProcessExited(1)). StatsBase Failed to precompile StatsBase [2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91] to "/home/pkgeval/.julia/compiled/v1.14/StatsBase/jl_b7SSdv" (ProcessExited(1)). MolecularEvolution Failed to precompile MolecularEvolution [9f975960-e239-4209-8aa0-3d3ad5a82892] to "/home/pkgeval/.julia/compiled/v1.14/MolecularEvolution/jl_PV8M4X" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/MolecularEvolution/rRKnS/test/runtests.jl:1 Testing failed after 362.07s ERROR: LoadError: Package MolecularEvolution errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3110 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:355 [12] _start() @ Base ./client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2196.61s: package fails to precompile