Package evaluation to test KmerAnalysis on Julia 1.14.0-DEV.2226 (797a5ef2b0*) started at 2026-05-23T20:40:56.079 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.95s ################################################################################ # Installation # Installing KmerAnalysis... Resolving package versions... Installed StableRNGs ────────── v0.1.2 Installed Twiddle ───────────── v1.1.2 Installed BioGenerics ───────── v0.1.5 Installed BioSymbols ────────── v4.0.4 Installed Automa ────────────── v0.8.4 Installed IndexableBitVectors ─ v1.0.0 Installed Combinatorics ─────── v1.1.0 Installed TranscodingStreams ── v0.9.13 Installed BioSequences ──────── v2.0.6 Installed ReadDatastores ────── v0.4.0 Installed FASTX ─────────────── v1.2.0 Installed KmerAnalysis ──────── v0.4.4 Updating `~/.julia/environments/v1.14/Project.toml` [a20136b7] + KmerAnalysis v0.4.4 Updating `~/.julia/environments/v1.14/Manifest.toml` ⌅ [67c07d97] + Automa v0.8.4 [47718e42] + BioGenerics v0.1.5 ⌅ [7e6ae17a] + BioSequences v2.0.6 ⌅ [3c28c6f8] + BioSymbols v4.0.4 [861a8166] + Combinatorics v1.1.0 ⌅ [c2308a5c] + FASTX v1.2.0 [1cb3b9ac] + IndexableBitVectors v1.0.0 [a20136b7] + KmerAnalysis v0.4.4 [70a005b8] + ReadDatastores v0.4.0 ⌅ [860ef19b] + StableRNGs v0.1.2 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [7200193e] + Twiddle v1.1.2 [2a0f44e3] + Base64 v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.13.0 [8dfed614] + Test v1.11.0 [4ec0a83e] + Unicode v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.36s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 5.6 s ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 0.6 s ✓ Twiddle 1.9 s ✓ Combinatorics 93.8 s ✓ TranscodingStreams WARNING: Constructor for type "Sampler" was extended in `StableRNGs` without explicit qualification or import.  NOTE: Assumed "Sampler" refers to `Random.Sampler`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Sampler end`.  Hint: To silence the warning, qualify `Sampler` as `Random.Sampler` in the method signature or explicitly `import Random: Sampler`. 0.7 s ✓ StableRNGs 1.5 s ✓ IndexableBitVectors 62.4 s ✓ BioGenerics 60.3 s ✓ Automa WARNING: Constructor for type "Char" was extended in `BioSymbols` without explicit qualification or import.  NOTE: Assumed "Char" refers to `Base.Char`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Char end`.  Hint: To silence the warning, qualify `Char` as `Base.Char` in the method signature or explicitly `import Base: Char`. 134.5 s ✓ BioSymbols [ Info: Compiling bit-parallel GC counter for LongSequence{<:NucleicAcidAlphabet} [ Info: Compiling bit-parallel mismatch counter for LongSequence{<:NucleicAcidAlphabet} [ Info: Compiling bit-parallel match counter for LongSequence{<:NucleicAcidAlphabet} [ Info: Compiling bit-parallel ambiguity counter... [ Info: For a single LongSequence{<:NucleicAcidAlphabet} [ Info: For a pair of LongSequence{<:NucleicAcidAlphabet}s [ Info: Compiling bit-parallel certainty counter for LongSequence{<:NucleicAcidAlphabet} [ Info: Compiling bit-parallel gap counter for LongSequence{<:NucleicAcidAlphabet} ┌ Info: JuliaLowering threw given input: │ code = │ :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =# @inline function Base.iterate(it::EveryMerIterator{T, S}, state = (it.start - 1, 1, (encoded_data_type(T))(0), (encoded_data_type(T))(0))) where {T, S <: Union{ReferenceSequence, LongSequence{<:NucleicAcidAlphabet{4}}}} │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =# │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:200 =# │ UT = encoded_data_type(T) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:201 =# │ (i, filled, fkmer, rkmer) = state │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:202 =# │ i += 1 │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:203 =# │ filled -= 1 │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:205 =# │ while i ≤ it.stop │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:206 =# │ nt = reinterpret(Int8, inbounds_getindex(it.seq, i)) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:207 =# │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:207 =# @inbounds fbits = UT(kmerbits[nt + 1]) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:208 =# │ rbits = ~fbits & (typeof(fbits))(0x03) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:209 =# │ fkmer = fkmer << 0x02 | fbits │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:210 =# │ rkmer = rkmer >> 0x02 | UT(rbits) << unsigned(offset(T, 1)) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:211 =# │ filled = ifelse(fbits == 0xff, 0, filled + 1) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:212 =# │ if filled == ksize(T) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:213 =# │ pos = (i - ksize(T)) + 1 │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:214 =# │ return (MerIterResult(pos, T(fkmer), T(rkmer)), (i, ksize(T), fkmer, rkmer)) │ end │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:216 =# │ i += 1 │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:217 =# │ end │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:218 =# │ return nothing │ end) │ st0 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ [macrocall] │ │ @inline :: Identifier │ │ :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =#) :: Value │ │ [function] │ │ [where] │ │ [call] │ │ [.] │ │ Base :: Identifier │ │ [inert] │ │ iterate :: Identifier │ │ [::] │ │ it :: Identifier │ │ [curly] │ │ EveryMerIterator :: Identifier │ │ T :: Identifier │ │ S :: Identifier │ │ [kw] │ │ state :: Identifier │ │ [tuple] │ │ [call] │ │ - :: Identifier │ │ [.] │ │ it :: Identifier │ │ [inert] │ │ start :: Identifier │ │ 1 :: Value │ │ 1 :: Value │ │ [call] │ │ [call] │ │ encoded_data_type :: Identifier │ │ T :: Identifier │ │ 0 :: Value │ │ [call] │ │ [call] │ │ encoded_data_type :: Identifier │ │ T :: Identifier │ │ 0 :: Value │ │ T :: Identifier │ │ [<:] │ │ S :: Identifier │ │ [curly] │ │ Union :: Identifier │ │ ReferenceSequence :: Identifier │ │ [curly] │ │ LongSequence :: Identifier │ │ [<:] │ │ [curly] │ │ NucleicAcidAlphabet :: Identifier │ │ 4 :: Value │ │ [block] │ │ [=] │ │ UT :: Identifier │ │ [call] │ │ encoded_data_type :: Identifier │ │ T :: Identifier │ │ [=] │ │ [tuple] │ │ i :: Identifier │ │ filled :: Identifier │ │ fkmer :: Identifier │ │ rkmer :: Identifier │ │ state :: Identifier │ │ [unknown_head] │ │ i :: Identifier │ │ 1 :: Value │ │ [unknown_head] │ │ filled :: Identifier │ │ 1 :: Value │ │ [while] │ │ [call] │ │ ≤ :: Identifier │ │ i :: Identifier │ │ [.] │ │ it :: Identifier │ │ [inert] │ │ stop :: Identifier │ │ [block] │ │ [=] │ │ nt :: Identifier │ │ [call] │ │ reinterpret :: Identifier │ │ Int8 :: Identifier │ │ [call] │ │ inbounds_getindex :: Identifier │ │ [.] │ │ it :: Identifier │ │ [inert] │ │ seq :: Identifier │ │ i :: Identifier │ │ [macrocall] │ │ @inbounds :: Identifier │ │ :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:207 =#) :: Value │ │ [=] │ │ fbits :: Identifier │ │ [call] │ │ UT :: Identifier │ │ [ref] │ │ kmerbits :: Identifier │ │ [call] │ │ + :: Identifier │ │ nt :: Identifier │ │ 1 :: Value │ │ [=] │ │ rbits :: Identifier │ │ [call] │ │ & :: Identifier │ │ [call] │ │ ~ :: Identifier │ │ fbits :: Identifier │ │ [call] │ │ [call] │ │ typeof :: Identifier │ │ fbits :: Identifier │ │ 0x03 :: Value │ │ [=] │ │ fkmer :: Identifier │ │ [call] │ │ | :: Identifier │ │ [call] │ │ << :: Identifier │ │ fkmer :: Identifier │ │ 0x02 :: Value │ │ fbits :: Identifier │ │ [=] │ │ rkmer :: Identifier │ │ [call] │ │ | :: Identifier │ │ [call] │ │ >> :: Identifier │ │ rkmer :: Identifier │ │ 0x02 :: Value │ │ [call] │ │ << :: Identifier │ │ [call] │ │ UT :: Identifier │ │ rbits :: Identifier │ │ [call] │ │ unsigned :: Identifier │ │ [call] │ │ offset :: Identifier │ │ T :: Identifier │ │ 1 :: Value │ │ [=] │ │ filled :: Identifier │ │ [call] │ │ ifelse :: Identifier │ │ [call] │ │ == :: Identifier │ │ fbits :: Identifier │ │ 0xff :: Value │ │ 0 :: Value │ │ [call] │ │ + :: Identifier │ │ filled :: Identifier │ │ 1 :: Value │ │ [if] │ │ [call] │ │ == :: Identifier │ │ filled :: Identifier │ │ [call] │ │ ksize :: Identifier │ │ T :: Identifier │ │ [block] │ │ [=] │ │ pos :: Identifier │ │ [call] │ │ + :: Identifier │ │ [call] │ │ - :: Identifier │ │ i :: Identifier │ │ [call] │ │ ksize :: Identifier │ │ T :: Identifier │ │ 1 :: Value │ │ [return] │ │ [tuple] │ │ [call] │ │ MerIterResult :: Identifier │ │ pos :: Identifier │ │ [call] │ │ T :: Identifier │ │ fkmer :: Identifier │ │ [call] │ │ T :: Identifier │ │ rkmer :: Identifier │ │ [tuple] │ │ i :: Identifier │ │ [call] │ │ ksize :: Identifier │ │ T :: Identifier │ │ fkmer :: Identifier │ │ rkmer :: Identifier │ │ [unknown_head] │ │ i :: Identifier │ │ 1 :: Value │ │ [return] │ │ nothing :: Identifier │ │ │ st1 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ [function] │ │ [where] │ │ [call] │ │ [.] │ │ Base :: Identifier │ scope_layer=1 │ [inert] │ │ iterate :: Identifier │ │ [::] │ │ it :: Identifier │ scope_layer=1 │ [curly] │ │ EveryMerIterator :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ S :: Identifier │ scope_layer=1 │ [kw] │ │ state :: Identifier │ scope_layer=1 │ [tuple] │ │ [call] │ │ - :: Identifier │ scope_layer=1 │ [.] │ │ it :: Identifier │ scope_layer=1 │ [inert] │ │ start :: Identifier │ │ 1 :: Value │ macro_source=197 │ 1 :: Value │ macro_source=197 │ [call] │ │ [call] │ │ encoded_data_type :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ 0 :: Value │ macro_source=197 │ [call] │ │ [call] │ │ encoded_data_type :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ 0 :: Value │ macro_source=197 │ T :: Identifier │ scope_layer=1 │ [<:] │ scope_layer=1 │ S :: Identifier │ scope_layer=1 │ [curly] │ │ Union :: Identifier │ scope_layer=1 │ ReferenceSequence :: Identifier │ scope_layer=1 │ [curly] │ │ LongSequence :: Identifier │ scope_layer=1 │ [<:] │ scope_layer=1 │ [curly] │ │ NucleicAcidAlphabet :: Identifier │ scope_layer=1 │ 4 :: Value │ macro_source=197 │ [block] │ │ [meta] │ │ inline :: Identifier │ scope_layer=1 │ [=] │ │ UT :: Identifier │ scope_layer=1 │ [call] │ │ encoded_data_type :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ [=] │ │ [tuple] │ │ i :: Identifier │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ fkmer :: Identifier │ scope_layer=1 │ rkmer :: Identifier │ scope_layer=1 │ state :: Identifier │ scope_layer=1 │ [unknown_head] │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=197 │ [unknown_head] │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=197 │ [while] │ │ [call] │ │ ≤ :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [.] │ │ it :: Identifier │ scope_layer=1 │ [inert] │ │ stop :: Identifier │ │ [block] │ │ [=] │ │ nt :: Identifier │ scope_layer=1 │ [call] │ │ reinterpret :: Identifier │ scope_layer=1 │ Int8 :: Identifier │ scope_layer=1 │ [call] │ │ inbounds_getindex :: Identifier │ scope_layer=1 │ [.] │ │ it :: Identifier │ scope_layer=1 │ [inert] │ │ seq :: Identifier │ │ i :: Identifier │ scope_layer=1 │ [block] │ │ [inbounds] │ macro_source=295 │ true :: Value │ macro_source=295 │ [local] │ │ [=] │ │ val :: Identifier │ scope_layer=3 │ [=] │ │ fbits :: Identifier │ scope_layer=1 │ [call] │ │ UT :: Identifier │ scope_layer=1 │ [ref] │ │ kmerbits :: Identifier │ scope_layer=1 │ [call] │ │ + :: Identifier │ scope_layer=1 │ nt :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=295 │ [inbounds] │ │ pop :: Identifier │ scope_layer=3 │ val :: Identifier │ scope_layer=3 │ [=] │ │ rbits :: Identifier │ scope_layer=1 │ [call] │ │ & :: Identifier │ scope_layer=1 │ [call] │ │ ~ :: Identifier │ scope_layer=1 │ fbits :: Identifier │ scope_layer=1 │ [call] │ │ [call] │ │ typeof :: Identifier │ scope_layer=1 │ fbits :: Identifier │ scope_layer=1 │ 0x03 :: Value │ macro_source=197 │ [=] │ │ fkmer :: Identifier │ scope_layer=1 │ [call] │ │ | :: Identifier │ scope_layer=1 │ [call] │ │ << :: Identifier │ scope_layer=1 │ fkmer :: Identifier │ scope_layer=1 │ 0x02 :: Value │ macro_source=197 │ fbits :: Identifier │ scope_layer=1 │ [=] │ │ rkmer :: Identifier │ scope_layer=1 │ [call] │ │ | :: Identifier │ scope_layer=1 │ [call] │ │ >> :: Identifier │ scope_layer=1 │ rkmer :: Identifier │ scope_layer=1 │ 0x02 :: Value │ macro_source=197 │ [call] │ │ << :: Identifier │ scope_layer=1 │ [call] │ │ UT :: Identifier │ scope_layer=1 │ rbits :: Identifier │ scope_layer=1 │ [call] │ │ unsigned :: Identifier │ scope_layer=1 │ [call] │ │ offset :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=197 │ [=] │ │ filled :: Identifier │ scope_layer=1 │ [call] │ │ ifelse :: Identifier │ scope_layer=1 │ [call] │ │ == :: Identifier │ scope_layer=1 │ fbits :: Identifier │ scope_layer=1 │ 0xff :: Value │ macro_source=197 │ 0 :: Value │ macro_source=197 │ [call] │ │ + :: Identifier │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=197 │ [if] │ │ [call] │ │ == :: Identifier │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ [call] │ │ ksize :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ [block] │ │ [=] │ │ pos :: Identifier │ scope_layer=1 │ [call] │ │ + :: Identifier │ scope_layer=1 │ [call] │ │ - :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [call] │ │ ksize :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=197 │ [return] │ │ [tuple] │ │ [call] │ │ MerIterResult :: Identifier │ scope_layer=1 │ pos :: Identifier │ scope_layer=1 │ [call] │ │ T :: Identifier │ scope_layer=1 │ fkmer :: Identifier │ scope_layer=1 │ [call] │ │ T :: Identifier │ scope_layer=1 │ rkmer :: Identifier │ scope_layer=1 │ [tuple] │ │ i :: Identifier │ scope_layer=1 │ [call] │ │ ksize :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ fkmer :: Identifier │ scope_layer=1 │ rkmer :: Identifier │ scope_layer=1 │ [unknown_head] │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=197 │ [return] │ │ nothing :: Identifier │ scope_layer=1 │ │ file = "/home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl" │ line = 197 └ mod = BioSequences ERROR: LoadError: internal lowering bug: #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =# - `jl_assert(!(haskey(ssa_rewrites, lhs_id)), _)`: multiple assignments to ssavalue Expression:  (= #₁ (call core.TypeVar :#T1 #₉₄)) Containing expressions:  (= #₁ (call core.TypeVar :#T1 #₉₄))  Detailed provenance:  (= #₁ (call core.TypeVar :#T1 #₉₄)) @#= /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:366 =#  └─ (= #₁ (call core.TypeVar :#T1 (call core.apply_type #₁₄/NucleicAcidAlphabet 4))) @#= /source/usr/share/julia/JuliaLowering/src/closure_conversion.jl:197 =#  └─ (= #₁ (call core.TypeVar :#T1 (call core.apply_type #₁₄/NucleicAcidAlphabet 4))) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 (call core.apply_type NucleicAcidAlphabet 4))) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 (curly NucleicAcidAlphabet 4)))  └─ (call core.TypeVar :#T1 (curly NucleicAcidAlphabet 4)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3025 =#  └─ (<: (curly NucleicAcidAlphabet 4))  └─ (<: (curly NucleicAcidAlphabet 4))  └─ (<: (curly NucleicAcidAlphabet 4))  └─ (<: (curly NucleicAcidAlphabet 4))  ├─ @ /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197  └─ (macrocall @inline :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =#) (function (where (call (. Base (inert iterate)) (:: it (curly EveryMerIterator T S)) (kw state (tuple (call - (. it (inert start)) 1) 1 (call (call encoded_data_type T) 0) (call (call encoded_data_type T) 0)))) T (<: S (curly Union ReferenceSequence (curly LongSequence (<: (curly NucleicAcidAlphabet 4)))))) (block (= UT (call encoded_data_type T)) (= (tuple i filled fkmer rkmer) state) (unknown_head i 1) (unknown_head filled 1) (while (call ≤ i (. it (inert stop))) (block (= nt (call reinterpret Int8 (call inbounds_getindex (. it (inert seq)) i))) (macrocall @inbounds :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:207 =#) (= fbits (call UT (ref kmerbits (call + nt 1))))) (= rbits (call & (call ~ fbits) (call (call typeof fbits) 0x03))) (= fkmer (call | (call << fkmer 0x02) fbits)) (= rkmer (call | (call >> rkmer 0x02) (call << (call UT rbits) (call unsigned (call offset T 1))))) (= filled (call ifelse (call == fbits 0xff) 0 (call + filled 1))) (if (call == filled (call ksize T)) (block (= pos (call + (call - i (call ksize T)) 1)) (return (tuple (call MerIterResult pos (call T fkmer) (call T rkmer)) (tuple i (call ksize T) fkmer rkmer))))) (unknown_head i 1))) (return nothing))))  └─ @ /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197  Stacktrace:  [1] iterate(A::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}})  @ Base /source/usr/share/julia/JuliaLowering/src/ast.jl:23 [inlined]  [2] renumber_body(ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, input_code::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, slot_rewrites::Dict{Int64, Int64})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1106  [3] compile_lambda(outer_ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1223  [4] linearize_ir(ctx::Base.JuliaLowering.ClosureConversionCtx{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1253  [5] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:33  [6] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [7] top-level scope  @ ~/.julia/packages/BioSequences/gseMo/src/BioSequences.jl:295  [8] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [10] top-level scope  @ stdin:5  [11] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [13] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [14] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [15] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 in expression starting at /home/pkgeval/.julia/packages/BioSequences/gseMo/src/BioSequences.jl:8 in expression starting at stdin:5 ✗ BioSequences ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base ./module.jl:111  [10] eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [11] top-level scope  @ ~/.julia/packages/FASTX/GmJTW/src/fasta/fasta.jl:12  [12] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [13] top-level scope  @ ~/.julia/packages/FASTX/GmJTW/src/FASTX.jl:16  [14] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [16] top-level scope  @ stdin:5  [17] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [19] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [20] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [21] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/FASTX/GmJTW/src/fasta/fasta.jl:4 in expression starting at /home/pkgeval/.julia/packages/FASTX/GmJTW/src/FASTX.jl:1 in expression starting at stdin:5 ✗ FASTX ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/ReadDatastores/W2s6p/src/ReadDatastores.jl:23  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/ReadDatastores/W2s6p/src/ReadDatastores.jl:1 in expression starting at stdin:5 ✗ ReadDatastores ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/KmerAnalysis/67DRc/src/KmerAnalysis.jl:38  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/KmerAnalysis/67DRc/src/KmerAnalysis.jl:1 in expression starting at stdin:5 ✗ KmerAnalysis 8 dependencies successfully precompiled in 1157 seconds. 11 already precompiled. 2 dependencies had output during precompilation: ┌ StableRNGs │ WARNING: Constructor for type "Sampler" was extended in `StableRNGs` without explicit qualification or import. │ NOTE: Assumed "Sampler" refers to `Random.Sampler`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Sampler end`. │ Hint: To silence the warning, qualify `Sampler` as `Random.Sampler` in the method signature or explicitly `import Random: Sampler`. └ ┌ BioSymbols │ WARNING: Constructor for type "Char" was extended in `BioSymbols` without explicit qualification or import. │ NOTE: Assumed "Char" refers to `Base.Char`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Char end`. │ Hint: To silence the warning, qualify `Char` as `Base.Char` in the method signature or explicitly `import Base: Char`. └ Precompilation completed after 1177.19s ################################################################################ # Testing # Testing KmerAnalysis Status `/tmp/jl_3szT08/Project.toml` ⌅ [7e6ae17a] BioSequences v2.0.6 [a20136b7] KmerAnalysis v0.4.4 [70a005b8] ReadDatastores v0.4.0 [8ba89e20] Distributed v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_3szT08/Manifest.toml` ⌅ [67c07d97] Automa v0.8.4 [47718e42] BioGenerics v0.1.5 ⌅ [7e6ae17a] BioSequences v2.0.6 ⌅ [3c28c6f8] BioSymbols v4.0.4 [861a8166] Combinatorics v1.1.0 ⌅ [c2308a5c] FASTX v1.2.0 [1cb3b9ac] IndexableBitVectors v1.0.0 [a20136b7] KmerAnalysis v0.4.4 [70a005b8] ReadDatastores v0.4.0 ⌅ [860ef19b] StableRNGs v0.1.2 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [7200193e] Twiddle v1.1.2 [2a0f44e3] Base64 v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Compiling bit-parallel GC counter for LongSequence{<:NucleicAcidAlphabet} [ Info: Compiling bit-parallel mismatch counter for LongSequence{<:NucleicAcidAlphabet} [ Info: Compiling bit-parallel match counter for LongSequence{<:NucleicAcidAlphabet} [ Info: Compiling bit-parallel ambiguity counter... [ Info: For a single LongSequence{<:NucleicAcidAlphabet} [ Info: For a pair of LongSequence{<:NucleicAcidAlphabet}s [ Info: Compiling bit-parallel certainty counter for LongSequence{<:NucleicAcidAlphabet} [ Info: Compiling bit-parallel gap counter for LongSequence{<:NucleicAcidAlphabet} ┌ Info: JuliaLowering threw given input: │ code = │ :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =# @inline function Base.iterate(it::EveryMerIterator{T, S}, state = (it.start - 1, 1, (encoded_data_type(T))(0), (encoded_data_type(T))(0))) where {T, S <: Union{ReferenceSequence, LongSequence{<:NucleicAcidAlphabet{4}}}} │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =# │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:200 =# │ UT = encoded_data_type(T) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:201 =# │ (i, filled, fkmer, rkmer) = state │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:202 =# │ i += 1 │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:203 =# │ filled -= 1 │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:205 =# │ while i ≤ it.stop │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:206 =# │ nt = reinterpret(Int8, inbounds_getindex(it.seq, i)) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:207 =# │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:207 =# @inbounds fbits = UT(kmerbits[nt + 1]) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:208 =# │ rbits = ~fbits & (typeof(fbits))(0x03) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:209 =# │ fkmer = fkmer << 0x02 | fbits │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:210 =# │ rkmer = rkmer >> 0x02 | UT(rbits) << unsigned(offset(T, 1)) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:211 =# │ filled = ifelse(fbits == 0xff, 0, filled + 1) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:212 =# │ if filled == ksize(T) │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:213 =# │ pos = (i - ksize(T)) + 1 │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:214 =# │ return (MerIterResult(pos, T(fkmer), T(rkmer)), (i, ksize(T), fkmer, rkmer)) │ end │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:216 =# │ i += 1 │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:217 =# │ end │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:218 =# │ return nothing │ end) │ st0 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ [macrocall] │ │ @inline :: Identifier │ │ :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =#) :: Value │ │ [function] │ │ [where] │ │ [call] │ │ [.] │ │ Base :: Identifier │ │ [inert] │ │ iterate :: Identifier │ │ [::] │ │ it :: Identifier │ │ [curly] │ │ EveryMerIterator :: Identifier │ │ T :: Identifier │ │ S :: Identifier │ │ [kw] │ │ state :: Identifier │ │ [tuple] │ │ [call] │ │ - :: Identifier │ │ [.] │ │ it :: Identifier │ │ [inert] │ │ start :: Identifier │ │ 1 :: Value │ │ 1 :: Value │ │ [call] │ │ [call] │ │ encoded_data_type :: Identifier │ │ T :: Identifier │ │ 0 :: Value │ │ [call] │ │ [call] │ │ encoded_data_type :: Identifier │ │ T :: Identifier │ │ 0 :: Value │ │ T :: Identifier │ │ [<:] │ │ S :: Identifier │ │ [curly] │ │ Union :: Identifier │ │ ReferenceSequence :: Identifier │ │ [curly] │ │ LongSequence :: Identifier │ │ [<:] │ │ [curly] │ │ NucleicAcidAlphabet :: Identifier │ │ 4 :: Value │ │ [block] │ │ [=] │ │ UT :: Identifier │ │ [call] │ │ encoded_data_type :: Identifier │ │ T :: Identifier │ │ [=] │ │ [tuple] │ │ i :: Identifier │ │ filled :: Identifier │ │ fkmer :: Identifier │ │ rkmer :: Identifier │ │ state :: Identifier │ │ [unknown_head] │ │ i :: Identifier │ │ 1 :: Value │ │ [unknown_head] │ │ filled :: Identifier │ │ 1 :: Value │ │ [while] │ │ [call] │ │ ≤ :: Identifier │ │ i :: Identifier │ │ [.] │ │ it :: Identifier │ │ [inert] │ │ stop :: Identifier │ │ [block] │ │ [=] │ │ nt :: Identifier │ │ [call] │ │ reinterpret :: Identifier │ │ Int8 :: Identifier │ │ [call] │ │ inbounds_getindex :: Identifier │ │ [.] │ │ it :: Identifier │ │ [inert] │ │ seq :: Identifier │ │ i :: Identifier │ │ [macrocall] │ │ @inbounds :: Identifier │ │ :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:207 =#) :: Value │ │ [=] │ │ fbits :: Identifier │ │ [call] │ │ UT :: Identifier │ │ [ref] │ │ kmerbits :: Identifier │ │ [call] │ │ + :: Identifier │ │ nt :: Identifier │ │ 1 :: Value │ │ [=] │ │ rbits :: Identifier │ │ [call] │ │ & :: Identifier │ │ [call] │ │ ~ :: Identifier │ │ fbits :: Identifier │ │ [call] │ │ [call] │ │ typeof :: Identifier │ │ fbits :: Identifier │ │ 0x03 :: Value │ │ [=] │ │ fkmer :: Identifier │ │ [call] │ │ | :: Identifier │ │ [call] │ │ << :: Identifier │ │ fkmer :: Identifier │ │ 0x02 :: Value │ │ fbits :: Identifier │ │ [=] │ │ rkmer :: Identifier │ │ [call] │ │ | :: Identifier │ │ [call] │ │ >> :: Identifier │ │ rkmer :: Identifier │ │ 0x02 :: Value │ │ [call] │ │ << :: Identifier │ │ [call] │ │ UT :: Identifier │ │ rbits :: Identifier │ │ [call] │ │ unsigned :: Identifier │ │ [call] │ │ offset :: Identifier │ │ T :: Identifier │ │ 1 :: Value │ │ [=] │ │ filled :: Identifier │ │ [call] │ │ ifelse :: Identifier │ │ [call] │ │ == :: Identifier │ │ fbits :: Identifier │ │ 0xff :: Value │ │ 0 :: Value │ │ [call] │ │ + :: Identifier │ │ filled :: Identifier │ │ 1 :: Value │ │ [if] │ │ [call] │ │ == :: Identifier │ │ filled :: Identifier │ │ [call] │ │ ksize :: Identifier │ │ T :: Identifier │ │ [block] │ │ [=] │ │ pos :: Identifier │ │ [call] │ │ + :: Identifier │ │ [call] │ │ - :: Identifier │ │ i :: Identifier │ │ [call] │ │ ksize :: Identifier │ │ T :: Identifier │ │ 1 :: Value │ │ [return] │ │ [tuple] │ │ [call] │ │ MerIterResult :: Identifier │ │ pos :: Identifier │ │ [call] │ │ T :: Identifier │ │ fkmer :: Identifier │ │ [call] │ │ T :: Identifier │ │ rkmer :: Identifier │ │ [tuple] │ │ i :: Identifier │ │ [call] │ │ ksize :: Identifier │ │ T :: Identifier │ │ fkmer :: Identifier │ │ rkmer :: Identifier │ │ [unknown_head] │ │ i :: Identifier │ │ 1 :: Value │ │ [return] │ │ nothing :: Identifier │ │ │ st1 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ [function] │ │ [where] │ │ [call] │ │ [.] │ │ Base :: Identifier │ scope_layer=1 │ [inert] │ │ iterate :: Identifier │ │ [::] │ │ it :: Identifier │ scope_layer=1 │ [curly] │ │ EveryMerIterator :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ S :: Identifier │ scope_layer=1 │ [kw] │ │ state :: Identifier │ scope_layer=1 │ [tuple] │ │ [call] │ │ - :: Identifier │ scope_layer=1 │ [.] │ │ it :: Identifier │ scope_layer=1 │ [inert] │ │ start :: Identifier │ │ 1 :: Value │ macro_source=197 │ 1 :: Value │ macro_source=197 │ [call] │ │ [call] │ │ encoded_data_type :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ 0 :: Value │ macro_source=197 │ [call] │ │ [call] │ │ encoded_data_type :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ 0 :: Value │ macro_source=197 │ T :: Identifier │ scope_layer=1 │ [<:] │ scope_layer=1 │ S :: Identifier │ scope_layer=1 │ [curly] │ │ Union :: Identifier │ scope_layer=1 │ ReferenceSequence :: Identifier │ scope_layer=1 │ [curly] │ │ LongSequence :: Identifier │ scope_layer=1 │ [<:] │ scope_layer=1 │ [curly] │ │ NucleicAcidAlphabet :: Identifier │ scope_layer=1 │ 4 :: Value │ macro_source=197 │ [block] │ │ [meta] │ │ inline :: Identifier │ scope_layer=1 │ [=] │ │ UT :: Identifier │ scope_layer=1 │ [call] │ │ encoded_data_type :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ [=] │ │ [tuple] │ │ i :: Identifier │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ fkmer :: Identifier │ scope_layer=1 │ rkmer :: Identifier │ scope_layer=1 │ state :: Identifier │ scope_layer=1 │ [unknown_head] │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=197 │ [unknown_head] │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=197 │ [while] │ │ [call] │ │ ≤ :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [.] │ │ it :: Identifier │ scope_layer=1 │ [inert] │ │ stop :: Identifier │ │ [block] │ │ [=] │ │ nt :: Identifier │ scope_layer=1 │ [call] │ │ reinterpret :: Identifier │ scope_layer=1 │ Int8 :: Identifier │ scope_layer=1 │ [call] │ │ inbounds_getindex :: Identifier │ scope_layer=1 │ [.] │ │ it :: Identifier │ scope_layer=1 │ [inert] │ │ seq :: Identifier │ │ i :: Identifier │ scope_layer=1 │ [block] │ │ [inbounds] │ macro_source=295 │ true :: Value │ macro_source=295 │ [local] │ │ [=] │ │ val :: Identifier │ scope_layer=3 │ [=] │ │ fbits :: Identifier │ scope_layer=1 │ [call] │ │ UT :: Identifier │ scope_layer=1 │ [ref] │ │ kmerbits :: Identifier │ scope_layer=1 │ [call] │ │ + :: Identifier │ scope_layer=1 │ nt :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=295 │ [inbounds] │ │ pop :: Identifier │ scope_layer=3 │ val :: Identifier │ scope_layer=3 │ [=] │ │ rbits :: Identifier │ scope_layer=1 │ [call] │ │ & :: Identifier │ scope_layer=1 │ [call] │ │ ~ :: Identifier │ scope_layer=1 │ fbits :: Identifier │ scope_layer=1 │ [call] │ │ [call] │ │ typeof :: Identifier │ scope_layer=1 │ fbits :: Identifier │ scope_layer=1 │ 0x03 :: Value │ macro_source=197 │ [=] │ │ fkmer :: Identifier │ scope_layer=1 │ [call] │ │ | :: Identifier │ scope_layer=1 │ [call] │ │ << :: Identifier │ scope_layer=1 │ fkmer :: Identifier │ scope_layer=1 │ 0x02 :: Value │ macro_source=197 │ fbits :: Identifier │ scope_layer=1 │ [=] │ │ rkmer :: Identifier │ scope_layer=1 │ [call] │ │ | :: Identifier │ scope_layer=1 │ [call] │ │ >> :: Identifier │ scope_layer=1 │ rkmer :: Identifier │ scope_layer=1 │ 0x02 :: Value │ macro_source=197 │ [call] │ │ << :: Identifier │ scope_layer=1 │ [call] │ │ UT :: Identifier │ scope_layer=1 │ rbits :: Identifier │ scope_layer=1 │ [call] │ │ unsigned :: Identifier │ scope_layer=1 │ [call] │ │ offset :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=197 │ [=] │ │ filled :: Identifier │ scope_layer=1 │ [call] │ │ ifelse :: Identifier │ scope_layer=1 │ [call] │ │ == :: Identifier │ scope_layer=1 │ fbits :: Identifier │ scope_layer=1 │ 0xff :: Value │ macro_source=197 │ 0 :: Value │ macro_source=197 │ [call] │ │ + :: Identifier │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=197 │ [if] │ │ [call] │ │ == :: Identifier │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ [call] │ │ ksize :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ [block] │ │ [=] │ │ pos :: Identifier │ scope_layer=1 │ [call] │ │ + :: Identifier │ scope_layer=1 │ [call] │ │ - :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [call] │ │ ksize :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=197 │ [return] │ │ [tuple] │ │ [call] │ │ MerIterResult :: Identifier │ scope_layer=1 │ pos :: Identifier │ scope_layer=1 │ [call] │ │ T :: Identifier │ scope_layer=1 │ fkmer :: Identifier │ scope_layer=1 │ [call] │ │ T :: Identifier │ scope_layer=1 │ rkmer :: Identifier │ scope_layer=1 │ [tuple] │ │ i :: Identifier │ scope_layer=1 │ [call] │ │ ksize :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ fkmer :: Identifier │ scope_layer=1 │ rkmer :: Identifier │ scope_layer=1 │ [unknown_head] │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=197 │ [return] │ │ nothing :: Identifier │ scope_layer=1 │ │ file = "/home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl" │ line = 197 └ mod = BioSequences ERROR: LoadError: internal lowering bug: #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =# - `jl_assert(!(haskey(ssa_rewrites, lhs_id)), _)`: multiple assignments to ssavalue Expression:  (= #₁ (call core.TypeVar :#T1 #₉₄)) Containing expressions:  (= #₁ (call core.TypeVar :#T1 #₉₄))  Detailed provenance:  (= #₁ (call core.TypeVar :#T1 #₉₄)) @#= /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:366 =#  └─ (= #₁ (call core.TypeVar :#T1 (call core.apply_type #₁₄/NucleicAcidAlphabet 4))) @#= /source/usr/share/julia/JuliaLowering/src/closure_conversion.jl:197 =#  └─ (= #₁ (call core.TypeVar :#T1 (call core.apply_type #₁₄/NucleicAcidAlphabet 4))) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 (call core.apply_type NucleicAcidAlphabet 4))) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 (curly NucleicAcidAlphabet 4)))  └─ (call core.TypeVar :#T1 (curly NucleicAcidAlphabet 4)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3025 =#  └─ (<: (curly NucleicAcidAlphabet 4))  └─ (<: (curly NucleicAcidAlphabet 4))  └─ (<: (curly NucleicAcidAlphabet 4))  └─ (<: (curly NucleicAcidAlphabet 4))  ├─ @ /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197  └─ (macrocall @inline :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =#) (function (where (call (. Base (inert iterate)) (:: it (curly EveryMerIterator T S)) (kw state (tuple (call - (. it (inert start)) 1) 1 (call (call encoded_data_type T) 0) (call (call encoded_data_type T) 0)))) T (<: S (curly Union ReferenceSequence (curly LongSequence (<: (curly NucleicAcidAlphabet 4)))))) (block (= UT (call encoded_data_type T)) (= (tuple i filled fkmer rkmer) state) (unknown_head i 1) (unknown_head filled 1) (while (call ≤ i (. it (inert stop))) (block (= nt (call reinterpret Int8 (call inbounds_getindex (. it (inert seq)) i))) (macrocall @inbounds :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:207 =#) (= fbits (call UT (ref kmerbits (call + nt 1))))) (= rbits (call & (call ~ fbits) (call (call typeof fbits) 0x03))) (= fkmer (call | (call << fkmer 0x02) fbits)) (= rkmer (call | (call >> rkmer 0x02) (call << (call UT rbits) (call unsigned (call offset T 1))))) (= filled (call ifelse (call == fbits 0xff) 0 (call + filled 1))) (if (call == filled (call ksize T)) (block (= pos (call + (call - i (call ksize T)) 1)) (return (tuple (call MerIterResult pos (call T fkmer) (call T rkmer)) (tuple i (call ksize T) fkmer rkmer))))) (unknown_head i 1))) (return nothing))))  └─ @ /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197  Stacktrace:  [1] iterate(A::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}})  @ Base /source/usr/share/julia/JuliaLowering/src/ast.jl:23 [inlined]  [2] renumber_body(ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, input_code::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, slot_rewrites::Dict{Int64, Int64})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1106  [3] compile_lambda(outer_ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1223  [4] linearize_ir(ctx::Base.JuliaLowering.ClosureConversionCtx{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1253  [5] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:33  [6] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [7] top-level scope  @ ~/.julia/packages/BioSequences/gseMo/src/BioSequences.jl:295  [8] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [10] top-level scope  @ stdin:5  [11] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [13] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [14] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [15] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 in expression starting at /home/pkgeval/.julia/packages/BioSequences/gseMo/src/BioSequences.jl:8 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base ./module.jl:111  [10] eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [11] top-level scope  @ ~/.julia/packages/FASTX/GmJTW/src/fasta/fasta.jl:12  [12] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [13] top-level scope  @ ~/.julia/packages/FASTX/GmJTW/src/FASTX.jl:16  [14] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [16] top-level scope  @ stdin:5  [17] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [19] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [20] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [21] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/FASTX/GmJTW/src/fasta/fasta.jl:4 in expression starting at /home/pkgeval/.julia/packages/FASTX/GmJTW/src/FASTX.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/ReadDatastores/W2s6p/src/ReadDatastores.jl:23  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/ReadDatastores/W2s6p/src/ReadDatastores.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/KmerAnalysis/67DRc/src/KmerAnalysis.jl:38  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/KmerAnalysis/67DRc/src/KmerAnalysis.jl:1 in expression starting at stdin:5 4 dependencies had output during precompilation: ┌ BioSequences │ [ Info: Compiling bit-parallel GC counter for LongSequence{<:NucleicAcidAlphabet} │ [ Info: Compiling bit-parallel mismatch counter for LongSequence{<:NucleicAcidAlphabet} │ [ Info: Compiling bit-parallel match counter for LongSequence{<:NucleicAcidAlphabet} │ [ Info: Compiling bit-parallel ambiguity counter... │ [ Info: For a single LongSequence{<:NucleicAcidAlphabet} │ [ Info: For a pair of LongSequence{<:NucleicAcidAlphabet}s │ [ Info: Compiling bit-parallel certainty counter for LongSequence{<:NucleicAcidAlphabet} │ [ Info: Compiling bit-parallel gap counter for LongSequence{<:NucleicAcidAlphabet} │ ┌ Info: JuliaLowering threw given input: │ │ code = │ │ :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =# @inline function Base.iterate(it::EveryMerIterator{T, S}, state = (it.start - 1, 1, (encoded_data_type(T))(0), (encoded_data_type(T))(0))) where {T, S <: Union{ReferenceSequence, LongSequence{<:NucleicAcidAlphabet{4}}}} │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =# │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:200 =# │ │ UT = encoded_data_type(T) │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:201 =# │ │ (i, filled, fkmer, rkmer) = state │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:202 =# │ │ i += 1 │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:203 =# │ │ filled -= 1 │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:205 =# │ │ while i ≤ it.stop │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:206 =# │ │ nt = reinterpret(Int8, inbounds_getindex(it.seq, i)) │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:207 =# │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:207 =# @inbounds fbits = UT(kmerbits[nt + 1]) │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:208 =# │ │ rbits = ~fbits & (typeof(fbits))(0x03) │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:209 =# │ │ fkmer = fkmer << 0x02 | fbits │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:210 =# │ │ rkmer = rkmer >> 0x02 | UT(rbits) << unsigned(offset(T, 1)) │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:211 =# │ │ filled = ifelse(fbits == 0xff, 0, filled + 1) │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:212 =# │ │ if filled == ksize(T) │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:213 =# │ │ pos = (i - ksize(T)) + 1 │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:214 =# │ │ return (MerIterResult(pos, T(fkmer), T(rkmer)), (i, ksize(T), fkmer, rkmer)) │ │ end │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:216 =# │ │ i += 1 │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:217 =# │ │ end │ │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:218 =# │ │ return nothing │ │ end) │ │ st0 = │ │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ │ [macrocall] │ │ │ @inline :: Identifier │ │ │ :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =#) :: Value │ │ │ [function] │ │ │ [where] │ │ │ [call] │ │ │ [.] │ │ │ Base :: Identifier │ │ │ [inert] │ │ │ iterate :: Identifier │ │ │ [::] │ │ │ it :: Identifier │ │ │ [curly] │ │ │ EveryMerIterator :: Identifier │ │ │ T :: Identifier │ │ │ S :: Identifier │ │ │ [kw] │ │ │ state :: Identifier │ │ │ [tuple] │ │ │ [call] │ │ │ - :: Identifier │ │ │ [.] │ │ │ it :: Identifier │ │ │ [inert] │ │ │ start :: Identifier │ │ │ 1 :: Value │ │ │ 1 :: Value │ │ │ [call] │ │ │ [call] │ │ │ encoded_data_type :: Identifier │ │ │ T :: Identifier │ │ │ 0 :: Value │ │ │ [call] │ │ │ [call] │ │ │ encoded_data_type :: Identifier │ │ │ T :: Identifier │ │ │ 0 :: Value │ │ │ T :: Identifier │ │ │ [<:] │ │ │ S :: Identifier │ │ │ [curly] │ │ │ Union :: Identifier │ │ │ ReferenceSequence :: Identifier │ │ │ [curly] │ │ │ LongSequence :: Identifier │ │ │ [<:] │ │ │ [curly] │ │ │ NucleicAcidAlphabet :: Identifier │ │ │ 4 :: Value │ │ │ [block] │ │ │ [=] │ │ │ UT :: Identifier │ │ │ [call] │ │ │ encoded_data_type :: Identifier │ │ │ T :: Identifier │ │ │ [=] │ │ │ [tuple] │ │ │ i :: Identifier │ │ │ filled :: Identifier │ │ │ fkmer :: Identifier │ │ │ rkmer :: Identifier │ │ │ state :: Identifier │ │ │ [unknown_head] │ │ │ i :: Identifier │ │ │ 1 :: Value │ │ │ [unknown_head] │ │ │ filled :: Identifier │ │ │ 1 :: Value │ │ │ [while] │ │ │ [call] │ │ │ ≤ :: Identifier │ │ │ i :: Identifier │ │ │ [.] │ │ │ it :: Identifier │ │ │ [inert] │ │ │ stop :: Identifier │ │ │ [block] │ │ │ [=] │ │ │ nt :: Identifier │ │ │ [call] │ │ │ reinterpret :: Identifier │ │ │ Int8 :: Identifier │ │ │ [call] │ │ │ inbounds_getindex :: Identifier │ │ │ [.] │ │ │ it :: Identifier │ │ │ [inert] │ │ │ seq :: Identifier │ │ │ i :: Identifier │ │ │ [macrocall] │ │ │ @inbounds :: Identifier │ │ │ :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:207 =#) :: Value │ │ │ [=] │ │ │ fbits :: Identifier │ │ │ [call] │ │ │ UT :: Identifier │ │ │ [ref] │ │ │ kmerbits :: Identifier │ │ │ [call] │ │ │ + :: Identifier │ │ │ nt :: Identifier │ │ │ 1 :: Value │ │ │ [=] │ │ │ rbits :: Identifier │ │ │ [call] │ │ │ & :: Identifier │ │ │ [call] │ │ │ ~ :: Identifier │ │ │ fbits :: Identifier │ │ │ [call] │ │ │ [call] │ │ │ typeof :: Identifier │ │ │ fbits :: Identifier │ │ │ 0x03 :: Value │ │ │ [=] │ │ │ fkmer :: Identifier │ │ │ [call] │ │ │ | :: Identifier │ │ │ [call] │ │ │ << :: Identifier │ │ │ fkmer :: Identifier │ │ │ 0x02 :: Value │ │ │ fbits :: Identifier │ │ │ [=] │ │ │ rkmer :: Identifier │ │ │ [call] │ │ │ | :: Identifier │ │ │ [call] │ │ │ >> :: Identifier │ │ │ rkmer :: Identifier │ │ │ 0x02 :: Value │ │ │ [call] │ │ │ << :: Identifier │ │ │ [call] │ │ │ UT :: Identifier │ │ │ rbits :: Identifier │ │ │ [call] │ │ │ unsigned :: Identifier │ │ │ [call] │ │ │ offset :: Identifier │ │ │ T :: Identifier │ │ │ 1 :: Value │ │ │ [=] │ │ │ filled :: Identifier │ │ │ [call] │ │ │ ifelse :: Identifier │ │ │ [call] │ │ │ == :: Identifier │ │ │ fbits :: Identifier │ │ │ 0xff :: Value │ │ │ 0 :: Value │ │ │ [call] │ │ │ + :: Identifier │ │ │ filled :: Identifier │ │ │ 1 :: Value │ │ │ [if] │ │ │ [call] │ │ │ == :: Identifier │ │ │ filled :: Identifier │ │ │ [call] │ │ │ ksize :: Identifier │ │ │ T :: Identifier │ │ │ [block] │ │ │ [=] │ │ │ pos :: Identifier │ │ │ [call] │ │ │ + :: Identifier │ │ │ [call] │ │ │ - :: Identifier │ │ │ i :: Identifier │ │ │ [call] │ │ │ ksize :: Identifier │ │ │ T :: Identifier │ │ │ 1 :: Value │ │ │ [return] │ │ │ [tuple] │ │ │ [call] │ │ │ MerIterResult :: Identifier │ │ │ pos :: Identifier │ │ │ [call] │ │ │ T :: Identifier │ │ │ fkmer :: Identifier │ │ │ [call] │ │ │ T :: Identifier │ │ │ rkmer :: Identifier │ │ │ [tuple] │ │ │ i :: Identifier │ │ │ [call] │ │ │ ksize :: Identifier │ │ │ T :: Identifier │ │ │ fkmer :: Identifier │ │ │ rkmer :: Identifier │ │ │ [unknown_head] │ │ │ i :: Identifier │ │ │ 1 :: Value │ │ │ [return] │ │ │ nothing :: Identifier │ │ │ │ │ st1 = │ │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ │ [function] │ │ │ [where] │ │ │ [call] │ │ │ [.] │ │ │ Base :: Identifier │ scope_layer=1 │ │ [inert] │ │ │ iterate :: Identifier │ │ │ [::] │ │ │ it :: Identifier │ scope_layer=1 │ │ [curly] │ │ │ EveryMerIterator :: Identifier │ scope_layer=1 │ │ T :: Identifier │ scope_layer=1 │ │ S :: Identifier │ scope_layer=1 │ │ [kw] │ │ │ state :: Identifier │ scope_layer=1 │ │ [tuple] │ │ │ [call] │ │ │ - :: Identifier │ scope_layer=1 │ │ [.] │ │ │ it :: Identifier │ scope_layer=1 │ │ [inert] │ │ │ start :: Identifier │ │ │ 1 :: Value │ macro_source=197 │ │ 1 :: Value │ macro_source=197 │ │ [call] │ │ │ [call] │ │ │ encoded_data_type :: Identifier │ scope_layer=1 │ │ T :: Identifier │ scope_layer=1 │ │ 0 :: Value │ macro_source=197 │ │ [call] │ │ │ [call] │ │ │ encoded_data_type :: Identifier │ scope_layer=1 │ │ T :: Identifier │ scope_layer=1 │ │ 0 :: Value │ macro_source=197 │ │ T :: Identifier │ scope_layer=1 │ │ [<:] │ scope_layer=1 │ │ S :: Identifier │ scope_layer=1 │ │ [curly] │ │ │ Union :: Identifier │ scope_layer=1 │ │ ReferenceSequence :: Identifier │ scope_layer=1 │ │ [curly] │ │ │ LongSequence :: Identifier │ scope_layer=1 │ │ [<:] │ scope_layer=1 │ │ [curly] │ │ │ NucleicAcidAlphabet :: Identifier │ scope_layer=1 │ │ 4 :: Value │ macro_source=197 │ │ [block] │ │ │ [meta] │ │ │ inline :: Identifier │ scope_layer=1 │ │ [=] │ │ │ UT :: Identifier │ scope_layer=1 │ │ [call] │ │ │ encoded_data_type :: Identifier │ scope_layer=1 │ │ T :: Identifier │ scope_layer=1 │ │ [=] │ │ │ [tuple] │ │ │ i :: Identifier │ scope_layer=1 │ │ filled :: Identifier │ scope_layer=1 │ │ fkmer :: Identifier │ scope_layer=1 │ │ rkmer :: Identifier │ scope_layer=1 │ │ state :: Identifier │ scope_layer=1 │ │ [unknown_head] │ scope_layer=1 │ │ i :: Identifier │ scope_layer=1 │ │ 1 :: Value │ macro_source=197 │ │ [unknown_head] │ scope_layer=1 │ │ filled :: Identifier │ scope_layer=1 │ │ 1 :: Value │ macro_source=197 │ │ [while] │ │ │ [call] │ │ │ ≤ :: Identifier │ scope_layer=1 │ │ i :: Identifier │ scope_layer=1 │ │ [.] │ │ │ it :: Identifier │ scope_layer=1 │ │ [inert] │ │ │ stop :: Identifier │ │ │ [block] │ │ │ [=] │ │ │ nt :: Identifier │ scope_layer=1 │ │ [call] │ │ │ reinterpret :: Identifier │ scope_layer=1 │ │ Int8 :: Identifier │ scope_layer=1 │ │ [call] │ │ │ inbounds_getindex :: Identifier │ scope_layer=1 │ │ [.] │ │ │ it :: Identifier │ scope_layer=1 │ │ [inert] │ │ │ seq :: Identifier │ │ │ i :: Identifier │ scope_layer=1 │ │ [block] │ │ │ [inbounds] │ macro_source=295 │ │ true :: Value │ macro_source=295 │ │ [local] │ │ │ [=] │ │ │ val :: Identifier │ scope_layer=3 │ │ [=] │ │ │ fbits :: Identifier │ scope_layer=1 │ │ [call] │ │ │ UT :: Identifier │ scope_layer=1 │ │ [ref] │ │ │ kmerbits :: Identifier │ scope_layer=1 │ │ [call] │ │ │ + :: Identifier │ scope_layer=1 │ │ nt :: Identifier │ scope_layer=1 │ │ 1 :: Value │ macro_source=295 │ │ [inbounds] │ │ │ pop :: Identifier │ scope_layer=3 │ │ val :: Identifier │ scope_layer=3 │ │ [=] │ │ │ rbits :: Identifier │ scope_layer=1 │ │ [call] │ │ │ & :: Identifier │ scope_layer=1 │ │ [call] │ │ │ ~ :: Identifier │ scope_layer=1 │ │ fbits :: Identifier │ scope_layer=1 │ │ [call] │ │ │ [call] │ │ │ typeof :: Identifier │ scope_layer=1 │ │ fbits :: Identifier │ scope_layer=1 │ │ 0x03 :: Value │ macro_source=197 │ │ [=] │ │ │ fkmer :: Identifier │ scope_layer=1 │ │ [call] │ │ │ | :: Identifier │ scope_layer=1 │ │ [call] │ │ │ << :: Identifier │ scope_layer=1 │ │ fkmer :: Identifier │ scope_layer=1 │ │ 0x02 :: Value │ macro_source=197 │ │ fbits :: Identifier │ scope_layer=1 │ │ [=] │ │ │ rkmer :: Identifier │ scope_layer=1 │ │ [call] │ │ │ | :: Identifier │ scope_layer=1 │ │ [call] │ │ │ >> :: Identifier │ scope_layer=1 │ │ rkmer :: Identifier │ scope_layer=1 │ │ 0x02 :: Value │ macro_source=197 │ │ [call] │ │ │ << :: Identifier │ scope_layer=1 │ │ [call] │ │ │ UT :: Identifier │ scope_layer=1 │ │ rbits :: Identifier │ scope_layer=1 │ │ [call] │ │ │ unsigned :: Identifier │ scope_layer=1 │ │ [call] │ │ │ offset :: Identifier │ scope_layer=1 │ │ T :: Identifier │ scope_layer=1 │ │ 1 :: Value │ macro_source=197 │ │ [=] │ │ │ filled :: Identifier │ scope_layer=1 │ │ [call] │ │ │ ifelse :: Identifier │ scope_layer=1 │ │ [call] │ │ │ == :: Identifier │ scope_layer=1 │ │ fbits :: Identifier │ scope_layer=1 │ │ 0xff :: Value │ macro_source=197 │ │ 0 :: Value │ macro_source=197 │ │ [call] │ │ │ + :: Identifier │ scope_layer=1 │ │ filled :: Identifier │ scope_layer=1 │ │ 1 :: Value │ macro_source=197 │ │ [if] │ │ │ [call] │ │ │ == :: Identifier │ scope_layer=1 │ │ filled :: Identifier │ scope_layer=1 │ │ [call] │ │ │ ksize :: Identifier │ scope_layer=1 │ │ T :: Identifier │ scope_layer=1 │ │ [block] │ │ │ [=] │ │ │ pos :: Identifier │ scope_layer=1 │ │ [call] │ │ │ + :: Identifier │ scope_layer=1 │ │ [call] │ │ │ - :: Identifier │ scope_layer=1 │ │ i :: Identifier │ scope_layer=1 │ │ [call] │ │ │ ksize :: Identifier │ scope_layer=1 │ │ T :: Identifier │ scope_layer=1 │ │ 1 :: Value │ macro_source=197 │ │ [return] │ │ │ [tuple] │ │ │ [call] │ │ │ MerIterResult :: Identifier │ scope_layer=1 │ │ pos :: Identifier │ scope_layer=1 │ │ [call] │ │ │ T :: Identifier │ scope_layer=1 │ │ fkmer :: Identifier │ scope_layer=1 │ │ [call] │ │ │ T :: Identifier │ scope_layer=1 │ │ rkmer :: Identifier │ scope_layer=1 │ │ [tuple] │ │ │ i :: Identifier │ scope_layer=1 │ │ [call] │ │ │ ksize :: Identifier │ scope_layer=1 │ │ T :: Identifier │ scope_layer=1 │ │ fkmer :: Identifier │ scope_layer=1 │ │ rkmer :: Identifier │ scope_layer=1 │ │ [unknown_head] │ scope_layer=1 │ │ i :: Identifier │ scope_layer=1 │ │ 1 :: Value │ macro_source=197 │ │ [return] │ │ │ nothing :: Identifier │ scope_layer=1 │ │ │ │ file = "/home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl" │ │ line = 197 │ └ mod = BioSequences │ ERROR: LoadError: internal lowering bug: │ #= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =# - `jl_assert(!(haskey(ssa_rewrites, lhs_id)), _)`: multiple assignments to ssavalue │ Expression: │ (= #₁ (call core.TypeVar :#T1 #₉₄)) │ Containing expressions: │ (= #₁ (call core.TypeVar :#T1 #₉₄)) │ │ Detailed provenance: │ (= #₁ (call core.TypeVar :#T1 #₉₄)) @#= /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:366 =# │ └─ (= #₁ (call core.TypeVar :#T1 (call core.apply_type #₁₄/NucleicAcidAlphabet 4))) @#= /source/usr/share/julia/JuliaLowering/src/closure_conversion.jl:197 =# │ └─ (= #₁ (call core.TypeVar :#T1 (call core.apply_type #₁₄/NucleicAcidAlphabet 4))) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =# │ └─ (= #₁ (call core.TypeVar :#T1 (call core.apply_type NucleicAcidAlphabet 4))) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =# │ └─ (= #₁ (call core.TypeVar :#T1 (curly NucleicAcidAlphabet 4))) │ └─ (call core.TypeVar :#T1 (curly NucleicAcidAlphabet 4)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3025 =# │ └─ (<: (curly NucleicAcidAlphabet 4)) │ └─ (<: (curly NucleicAcidAlphabet 4)) │ └─ (<: (curly NucleicAcidAlphabet 4)) │ └─ (<: (curly NucleicAcidAlphabet 4)) │ ├─ @ /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 │ └─ (macrocall @inline :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 =#) (function (where (call (. Base (inert iterate)) (:: it (curly EveryMerIterator T S)) (kw state (tuple (call - (. it (inert start)) 1) 1 (call (call encoded_data_type T) 0) (call (call encoded_data_type T) 0)))) T (<: S (curly Union ReferenceSequence (curly LongSequence (<: (curly NucleicAcidAlphabet 4)))))) (block (= UT (call encoded_data_type T)) (= (tuple i filled fkmer rkmer) state) (unknown_head i 1) (unknown_head filled 1) (while (call ≤ i (. it (inert stop))) (block (= nt (call reinterpret Int8 (call inbounds_getindex (. it (inert seq)) i))) (macrocall @inbounds :(#= /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:207 =#) (= fbits (call UT (ref kmerbits (call + nt 1))))) (= rbits (call & (call ~ fbits) (call (call typeof fbits) 0x03))) (= fkmer (call | (call << fkmer 0x02) fbits)) (= rkmer (call | (call >> rkmer 0x02) (call << (call UT rbits) (call unsigned (call offset T 1))))) (= filled (call ifelse (call == fbits 0xff) 0 (call + filled 1))) (if (call == filled (call ksize T)) (block (= pos (call + (call - i (call ksize T)) 1)) (return (tuple (call MerIterResult pos (call T fkmer) (call T rkmer)) (tuple i (call ksize T) fkmer rkmer))))) (unknown_head i 1))) (return nothing)))) │ └─ @ /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 │ │ Stacktrace: │ [1] iterate(A::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}) │ @ Base /source/usr/share/julia/JuliaLowering/src/ast.jl:23 [inlined] │ [2] renumber_body(ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, input_code::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, slot_rewrites::Dict{Int64, Int64}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1106 │ [3] compile_lambda(outer_ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1223 │ [4] linearize_ir(ctx::Base.JuliaLowering.ClosureConversionCtx{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1253 │ [5] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:33 │ [6] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:327 │ [7] top-level scope │ @ ~/.julia/packages/BioSequences/gseMo/src/BioSequences.jl:295 │ [8] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [10] top-level scope │ @ stdin:5 │ [11] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [13] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [14] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [15] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/BioSequences/gseMo/src/iterators/eachmer.jl:197 │ in expression starting at /home/pkgeval/.julia/packages/BioSequences/gseMo/src/BioSequences.jl:8 │ in expression starting at stdin:5 └ ┌ FASTX │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2818 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2672 │ [4] macro expansion │ @ ./loading.jl:2599 [inlined] │ [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String) │ @ Base ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2563 │ [7] require │ @ ./loading.jl:2539 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base ./module.jl:36 [inlined] │ [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) │ @ Base ./module.jl:111 │ [10] eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195 │ [11] top-level scope │ @ ~/.julia/packages/FASTX/GmJTW/src/fasta/fasta.jl:12 │ [12] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:327 │ [13] top-level scope │ @ ~/.julia/packages/FASTX/GmJTW/src/FASTX.jl:16 │ [14] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [16] top-level scope │ @ stdin:5 │ [17] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [19] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [20] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [21] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/FASTX/GmJTW/src/fasta/fasta.jl:4 │ in expression starting at /home/pkgeval/.julia/packages/FASTX/GmJTW/src/FASTX.jl:1 │ in expression starting at stdin:5 └ ┌ ReadDatastores │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2818 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2672 │ [4] macro expansion │ @ ./loading.jl:2599 [inlined] │ [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String) │ @ Base ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2563 │ [7] require │ @ ./loading.jl:2539 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base ./module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [10] _eval_using(to::Module, path::Expr, flags::UInt8) │ @ Base ./module.jl:137 [inlined] │ [11] eval_using(to::Module, path::Expr) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207 │ [12] top-level scope │ @ ~/.julia/packages/ReadDatastores/W2s6p/src/ReadDatastores.jl:23 │ [13] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [15] top-level scope │ @ stdin:5 │ [16] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [18] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [19] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [20] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/ReadDatastores/W2s6p/src/ReadDatastores.jl:1 │ in expression starting at stdin:5 └ ┌ KmerAnalysis │ [Output was shown above] └ ERROR: LoadError: The following 4 packages failed to precompile: BioSequences Failed to precompile BioSequences [7e6ae17a-c86d-528c-b3b9-7f778a29fe59] to "/home/pkgeval/.julia/compiled/v1.14/BioSequences/jl_OD9Phi" (ProcessExited(1)). FASTX Failed to precompile FASTX [c2308a5c-f048-11e8-3e8a-31650f418d12] to "/home/pkgeval/.julia/compiled/v1.14/FASTX/jl_zeWyxw" (ProcessExited(1)). ReadDatastores Failed to precompile ReadDatastores [70a005b8-9d8a-11e9-0d98-c909fa2e52d2] to "/home/pkgeval/.julia/compiled/v1.14/ReadDatastores/jl_o8P3U1" (ProcessExited(1)). KmerAnalysis Failed to precompile KmerAnalysis [a20136b7-8e32-4c10-91d3-7060c0bd8ec7] to "/home/pkgeval/.julia/compiled/v1.14/KmerAnalysis/jl_QKXefl" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/KmerAnalysis/67DRc/test/runtests.jl:1 Testing failed after 807.71s ERROR: LoadError: Package KmerAnalysis errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3110 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:355 [12] _start() @ Base ./client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2047.1s: package fails to precompile