Package evaluation to test GenomicFeatures on Julia 1.14.0-DEV.2226 (797a5ef2b0*) started at 2026-05-23T17:45:44.056 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.65s ################################################################################ # Installation # Installing GenomicFeatures... Resolving package versions... Installed TranscodingStreams ─ v0.11.3 Installed OrderedCollections ─ v1.8.1 Installed Compat ───────────── v4.18.1 Installed BioGenerics ──────── v0.1.5 Installed DataStructures ───── v0.18.22 Installed IntervalTrees ────── v1.1.0 Installed GenomicFeatures ──── v3.0.0 Updating `~/.julia/environments/v1.14/Project.toml` [899a7d2d] + GenomicFeatures v3.0.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47718e42] + BioGenerics v0.1.5 [34da2185] + Compat v4.18.1 ⌅ [864edb3b] + DataStructures v0.18.22 [899a7d2d] + GenomicFeatures v3.0.0 [524e6230] + IntervalTrees v1.1.0 [bac558e1] + OrderedCollections v1.8.1 [3bb67fe8] + TranscodingStreams v0.11.3 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.72s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 5.7 s ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 0.5 s ✓ Reexport 0.9 s ✓ Statistics 0.9 s ✓ DataAPI 2.3 s ✓ IrrationalConstants 0.6 s ✓ StatsAPI 153.1 s ✓ OrderedCollections 1.1 s ✓ DocStringExtensions 103.7 s ✓ IntervalTrees 111.0 s ✓ FillArrays 39.7 s ✓ PtrArrays 57.9 s ✓ TranscodingStreams 42.1 s ✓ PDMats 1.5 s ✓ Compat 2.3 s ✓ Preferences 41.0 s ✓ Statistics → SparseArraysExt 64.2 s ✓ Missings 1.6 s ✓ LogExpFunctions 74.4 s ✓ FillArrays → FillArraysSparseArraysExt 40.3 s ✓ FillArrays → FillArraysStatisticsExt 41.6 s ✓ AliasTables 44.3 s ✓ BioGenerics 76.4 s ✓ FillArrays → FillArraysPDMatsExt 0.6 s ✓ Compat → CompatLinearAlgebraExt 2.8 s ✓ JLLWrappers 308.7 s ✓ DataStructures 2.8 s ✓ Rmath_jll 2.9 s ✓ OpenSpecFun_jll 40.9 s ✓ SortingAlgorithms 44.4 s ✓ QuadGK ┌ Info: JuliaLowering threw given input: │ code = │ :(function Base.:(==)(a::GenomicPosition, b::GenomicPosition) where T │ #= /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:57 =# │ #= /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:58 =# │ return groupname(a) == groupname(b) && (position(a) == position(b) && metadata(a) == metadata(b)) │ end) │ st0 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ [function] │ │ [where] │ │ [call] │ │ [.] │ │ Base :: Identifier │ │ [inert] │ │ == :: Identifier │ │ [::] │ │ a :: Identifier │ │ GenomicPosition :: Identifier │ │ [::] │ │ b :: Identifier │ │ GenomicPosition :: Identifier │ │ T :: Identifier │ │ [block] │ │ [return] │ │ [&&] │ │ [call] │ │ == :: Identifier │ │ [call] │ │ groupname :: Identifier │ │ a :: Identifier │ │ [call] │ │ groupname :: Identifier │ │ b :: Identifier │ │ [&&] │ │ [call] │ │ == :: Identifier │ │ [call] │ │ position :: Identifier │ │ a :: Identifier │ │ [call] │ │ position :: Identifier │ │ b :: Identifier │ │ [call] │ │ == :: Identifier │ │ [call] │ │ metadata :: Identifier │ │ a :: Identifier │ │ [call] │ │ metadata :: Identifier │ │ b :: Identifier │ │ │ st1 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ [function] │ │ [where] │ │ [call] │ │ [.] │ │ Base :: Identifier │ scope_layer=1 │ [inert] │ │ == :: Identifier │ │ [::] │ │ a :: Identifier │ scope_layer=1 │ GenomicPosition :: Identifier │ scope_layer=1 │ [::] │ │ b :: Identifier │ scope_layer=1 │ GenomicPosition :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ [block] │ │ [return] │ │ [&&] │ │ [call] │ │ == :: Identifier │ scope_layer=1 │ [call] │ │ groupname :: Identifier │ scope_layer=1 │ a :: Identifier │ scope_layer=1 │ [call] │ │ groupname :: Identifier │ scope_layer=1 │ b :: Identifier │ scope_layer=1 │ [&&] │ │ [call] │ │ == :: Identifier │ scope_layer=1 │ [call] │ │ position :: Identifier │ scope_layer=1 │ a :: Identifier │ scope_layer=1 │ [call] │ │ position :: Identifier │ scope_layer=1 │ b :: Identifier │ scope_layer=1 │ [call] │ │ == :: Identifier │ scope_layer=1 │ [call] │ │ metadata :: Identifier │ scope_layer=1 │ a :: Identifier │ scope_layer=1 │ [call] │ │ metadata :: Identifier │ scope_layer=1 │ b :: Identifier │ scope_layer=1 │ │ file = "/home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl" │ line = 57 └ mod = GenomicFeatures ERROR: LoadError: LoweringError: #= /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:57 =# - method definition declares type variable but does not use it in the type of any function parameter Expression:  (_typevar T core.Any core.Any) Containing expressions:  (_typevar T core.Any core.Any)  Detailed provenance:  (_typevar T core.Any core.Any) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3012 =#  └─ T  └─ T  └─ @ /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:57  Stacktrace:  [1] expand_function_def(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, src::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, raw_args::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, wheres::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, body::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, rett::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:2860  [2] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4268  [3] Dict{Int64, Int64}()  @ Base /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4152 [inlined]  [4] expand_forms_2(ctx::Base.JuliaLowering.MacroExpansionContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4469  [5] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:30  [6] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [7] top-level scope  @ ~/.julia/packages/GenomicFeatures/tOEn1/src/GenomicFeatures.jl:54  [8] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [10] top-level scope  @ stdin:5  [11] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [13] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [14] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [15] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:57 in expression starting at /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/GenomicFeatures.jl:3 in expression starting at stdin:5 ✗ GenomicFeatures 2.8 s ✓ Rmath 78.8 s ✓ SpecialFunctions ERROR: LoadError: Creating a new global in closed module `IrrationalConstants` (`Mad_constant`) breaks incremental compilation because the side effects will not be permanent. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/StatsBase/lRQEN/src/scalarstats.jl:527  [2] macro expansion  @ ~/.julia/packages/IrrationalConstants/RokwY/src/macro.jl:107 [inlined]  [3] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [4] top-level scope  @ ~/.julia/packages/StatsBase/lRQEN/src/StatsBase.jl:251  [5] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [6] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [7] top-level scope  @ stdin:5  [8] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [10] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [11] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [12] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/StatsBase/lRQEN/src/scalarstats.jl:527 in expression starting at /home/pkgeval/.julia/packages/StatsBase/lRQEN/src/StatsBase.jl:1 in expression starting at stdin:5 ✗ StatsBase 43.1 s ✓ HypergeometricFunctions ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/PDMats/RK55S/ext/StatsBaseExt.jl:6  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/PDMats/RK55S/ext/StatsBaseExt.jl:1 in expression starting at stdin:5 ✗ PDMats → StatsBaseExt 41.1 s ✓ StatsFuns ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/Distributions/PVuFU/src/Distributions.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/Distributions/PVuFU/src/Distributions.jl:1 in expression starting at stdin:5 ✗ Distributions ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("31c24e10-a181-5473-b8eb-7969acd0382f"), "Distributions") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/Distributions/PVuFU/ext/DistributionsTestExt.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/Distributions/PVuFU/ext/DistributionsTestExt.jl:1 in expression starting at stdin:5 ✗ Distributions → DistributionsTestExt 33 dependencies successfully precompiled in 1779 seconds. 17 already precompiled. Precompilation completed after 1797.33s ################################################################################ # Testing # Testing GenomicFeatures Status `/tmp/jl_KIIpf9/Project.toml` [47718e42] BioGenerics v0.1.5 ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.125 [899a7d2d] GenomicFeatures v3.0.0 [524e6230] IntervalTrees v1.1.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_KIIpf9/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [47718e42] BioGenerics v0.1.5 [34da2185] Compat v4.18.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.125 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.16.0 [899a7d2d] GenomicFeatures v3.0.0 [34004b35] HypergeometricFunctions v0.3.28 [524e6230] IntervalTrees v1.1.0 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.8.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.7.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3bb67fe8] TranscodingStreams v0.11.3 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [4536629a] OpenBLAS_jll v0.3.33+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Info: JuliaLowering threw given input: │ code = │ :(function Base.:(==)(a::GenomicPosition, b::GenomicPosition) where T │ #= /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:57 =# │ #= /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:58 =# │ return groupname(a) == groupname(b) && (position(a) == position(b) && metadata(a) == metadata(b)) │ end) │ st0 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ [function] │ │ [where] │ │ [call] │ │ [.] │ │ Base :: Identifier │ │ [inert] │ │ == :: Identifier │ │ [::] │ │ a :: Identifier │ │ GenomicPosition :: Identifier │ │ [::] │ │ b :: Identifier │ │ GenomicPosition :: Identifier │ │ T :: Identifier │ │ [block] │ │ [return] │ │ [&&] │ │ [call] │ │ == :: Identifier │ │ [call] │ │ groupname :: Identifier │ │ a :: Identifier │ │ [call] │ │ groupname :: Identifier │ │ b :: Identifier │ │ [&&] │ │ [call] │ │ == :: Identifier │ │ [call] │ │ position :: Identifier │ │ a :: Identifier │ │ [call] │ │ position :: Identifier │ │ b :: Identifier │ │ [call] │ │ == :: Identifier │ │ [call] │ │ metadata :: Identifier │ │ a :: Identifier │ │ [call] │ │ metadata :: Identifier │ │ b :: Identifier │ │ │ st1 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ [function] │ │ [where] │ │ [call] │ │ [.] │ │ Base :: Identifier │ scope_layer=1 │ [inert] │ │ == :: Identifier │ │ [::] │ │ a :: Identifier │ scope_layer=1 │ GenomicPosition :: Identifier │ scope_layer=1 │ [::] │ │ b :: Identifier │ scope_layer=1 │ GenomicPosition :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ [block] │ │ [return] │ │ [&&] │ │ [call] │ │ == :: Identifier │ scope_layer=1 │ [call] │ │ groupname :: Identifier │ scope_layer=1 │ a :: Identifier │ scope_layer=1 │ [call] │ │ groupname :: Identifier │ scope_layer=1 │ b :: Identifier │ scope_layer=1 │ [&&] │ │ [call] │ │ == :: Identifier │ scope_layer=1 │ [call] │ │ position :: Identifier │ scope_layer=1 │ a :: Identifier │ scope_layer=1 │ [call] │ │ position :: Identifier │ scope_layer=1 │ b :: Identifier │ scope_layer=1 │ [call] │ │ == :: Identifier │ scope_layer=1 │ [call] │ │ metadata :: Identifier │ scope_layer=1 │ a :: Identifier │ scope_layer=1 │ [call] │ │ metadata :: Identifier │ scope_layer=1 │ b :: Identifier │ scope_layer=1 │ │ file = "/home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl" │ line = 57 └ mod = GenomicFeatures ERROR: LoadError: LoweringError: #= /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:57 =# - method definition declares type variable but does not use it in the type of any function parameter Expression:  (_typevar T core.Any core.Any) Containing expressions:  (_typevar T core.Any core.Any)  Detailed provenance:  (_typevar T core.Any core.Any) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3012 =#  └─ T  └─ T  └─ @ /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:57  Stacktrace:  [1] expand_function_def(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, src::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, raw_args::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, wheres::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, body::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, rett::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:2860  [2] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4268  [3] Dict{Int64, Int64}()  @ Base /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4152 [inlined]  [4] expand_forms_2(ctx::Base.JuliaLowering.MacroExpansionContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4469  [5] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:30  [6] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [7] top-level scope  @ ~/.julia/packages/GenomicFeatures/tOEn1/src/GenomicFeatures.jl:54  [8] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [10] top-level scope  @ stdin:5  [11] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [13] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [14] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [15] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/position.jl:57 in expression starting at /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/src/GenomicFeatures.jl:3 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ GenomicFeatures │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: GenomicFeatures Failed to precompile GenomicFeatures [899a7d2d-5c61-547b-bef9-6698a8d05446] to "/home/pkgeval/.julia/compiled/v1.14/GenomicFeatures/jl_y9wyXi" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/GenomicFeatures/tOEn1/test/runtests.jl:1 Testing failed after 147.77s ERROR: LoadError: Package GenomicFeatures errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3110 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:355 [12] _start() @ Base ./client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2010.43s: package fails to precompile