Package evaluation to load GeneticVariation on Julia 1.14.0-DEV.2226 (797a5ef2b0*) started at 2026-05-23T22:58:05.837 ################################################################################ # Set-up # Set-up completed after 0.11s ################################################################################ # Installation # Installing GeneticVariation... Resolving package versions... Installed CodecZlib ─────────── v0.7.8 Installed OrderedCollections ── v1.8.1 Installed TranscodingStreams ── v0.9.13 Installed StringEncodings ───── v0.3.7 Installed Combinatorics ─────── v0.7.0 Installed Compat ────────────── v4.18.1 Installed RecipesBase ───────── v0.8.0 Installed DataStructures ────── v0.18.22 Installed Twiddle ───────────── v1.1.2 Installed GeneticVariation ──── v0.4.1 Installed BioSymbols ────────── v3.1.0 Installed YAML ──────────────── v0.4.16 Installed BufferedStreams ───── v1.2.2 Installed Preferences ───────── v1.5.2 Installed JLLWrappers ───────── v1.8.0 Installed BioCore ───────────── v2.0.5 Installed Libiconv_jll ──────── v1.18.0+0 Installed Polynomials ───────── v0.6.1 Installed Automa ────────────── v0.7.0 Installed IndexableBitVectors ─ v1.0.0 Installed BGZFStreams ───────── v0.3.2 Installed IntervalTrees ─────── v1.1.0 Installed BioSequences ──────── v1.1.0 Installing 1 artifacts Installed artifact Libiconv 1.9 MiB Updating `~/.julia/environments/v1.14/Project.toml` [9bc6ac9d] + GeneticVariation v0.4.1 Updating `~/.julia/environments/v1.14/Manifest.toml` ⌅ [67c07d97] + Automa v0.7.0 [28d598bf] + BGZFStreams v0.3.2 [37cfa864] + BioCore v2.0.5 ⌅ [7e6ae17a] + BioSequences v1.1.0 ⌅ [3c28c6f8] + BioSymbols v3.1.0 [e1450e63] + BufferedStreams v1.2.2 [944b1d66] + CodecZlib v0.7.8 ⌅ [861a8166] + Combinatorics v0.7.0 [34da2185] + Compat v4.18.1 ⌅ [864edb3b] + DataStructures v0.18.22 [9bc6ac9d] + GeneticVariation v0.4.1 [1cb3b9ac] + IndexableBitVectors v1.0.0 [524e6230] + IntervalTrees v1.1.0 [692b3bcd] + JLLWrappers v1.8.0 [bac558e1] + OrderedCollections v1.8.1 ⌅ [f27b6e38] + Polynomials v0.6.1 [21216c6a] + Preferences v1.5.2 ⌅ [3cdcf5f2] + RecipesBase v0.8.0 [69024149] + StringEncodings v0.3.7 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [7200193e] + Twiddle v1.1.2 [ddb6d928] + YAML v0.4.16 [94ce4f54] + Libiconv_jll v1.18.0+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [4536629a] + OpenBLAS_jll v0.3.33+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 12.03s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling project... 0.6 s ✓ RecipesBase 0.5 s ✓ Twiddle 108.5 s ✓ IntervalTrees 168.4 s ✓ BufferedStreams 149.1 s ✓ OrderedCollections 2.2 s ✓ Preferences 1.4 s ✓ Compat 93.2 s ✓ TranscodingStreams 1.4 s ✓ IndexableBitVectors 1.5 s ✓ Polynomials 2.6 s ✓ JLLWrappers 0.6 s ✓ Compat → CompatLinearAlgebraExt 40.2 s ✓ CodecZlib 1.8 s ✓ Combinatorics 2.9 s ✓ Libiconv_jll 300.6 s ✓ DataStructures 39.2 s ✓ BGZFStreams 49.4 s ✓ StringEncodings 124.7 s ✓ Automa 72.0 s ✓ YAML WARNING: Constructor for type "Char" was extended in `BioSymbols` without explicit qualification or import.  NOTE: Assumed "Char" refers to `Base.Char`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Char end`.  Hint: To silence the warning, qualify `Char` as `Base.Char` in the method signature or explicitly `import Base: Char`. 132.9 s ✓ BioSymbols 133.8 s ✓ BioCore WARNING: Constructor for type "UInt64" was extended in `BioSequences` without explicit qualification or import.  NOTE: Assumed "UInt64" refers to `Base.UInt64`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function UInt64 end`.  Hint: To silence the warning, qualify `UInt64` as `Base.UInt64` in the method signature or explicitly `import Base: UInt64`. ┌ Info: JuliaLowering threw given input: │ code = │ :(function Base.iterate(it::EveryKmerIterator{T, S}, state = (it.start - 1, 1, UInt64(0))) where {T, S <: Union{ReferenceSequence, BioSequence{<:FourBitNucs}}} │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:170 =# │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:172 =# │ (i, filled, kmer) = state │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:173 =# │ i += 1 │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:174 =# │ filled -= 1 │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:176 =# │ while i ≤ it.stop │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:177 =# │ nt = reinterpret(Int8, inbounds_getindex(it.seq, i)) │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:178 =# │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:178 =# @inbounds val = kmerbits[nt + 1] │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:179 =# │ kmer = kmer << 2 | val │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:180 =# │ filled = ifelse(val == 0xff, 0, filled + 1) │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:182 =# │ if filled == kmersize(T) │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:183 =# │ pos = (i - kmersize(T)) + 1 │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:184 =# │ return ((pos, T(kmer)), (i, kmersize(T), kmer)) │ end │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:186 =# │ i += 1 │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:187 =# │ end │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:188 =# │ return nothing │ end) │ st0 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ [function] │ │ [where] │ │ [call] │ │ [.] │ │ Base :: Identifier │ │ [inert] │ │ iterate :: Identifier │ │ [::] │ │ it :: Identifier │ │ [curly] │ │ EveryKmerIterator :: Identifier │ │ T :: Identifier │ │ S :: Identifier │ │ [kw] │ │ state :: Identifier │ │ [tuple] │ │ [call] │ │ - :: Identifier │ │ [.] │ │ it :: Identifier │ │ [inert] │ │ start :: Identifier │ │ 1 :: Value │ │ 1 :: Value │ │ [call] │ │ UInt64 :: Identifier │ │ 0 :: Value │ │ T :: Identifier │ │ [<:] │ │ S :: Identifier │ │ [curly] │ │ Union :: Identifier │ │ ReferenceSequence :: Identifier │ │ [curly] │ │ BioSequence :: Identifier │ │ [<:] │ │ FourBitNucs :: Identifier │ │ [block] │ │ [=] │ │ [tuple] │ │ i :: Identifier │ │ filled :: Identifier │ │ kmer :: Identifier │ │ state :: Identifier │ │ [unknown_head] │ │ i :: Identifier │ │ 1 :: Value │ │ [unknown_head] │ │ filled :: Identifier │ │ 1 :: Value │ │ [while] │ │ [call] │ │ ≤ :: Identifier │ │ i :: Identifier │ │ [.] │ │ it :: Identifier │ │ [inert] │ │ stop :: Identifier │ │ [block] │ │ [=] │ │ nt :: Identifier │ │ [call] │ │ reinterpret :: Identifier │ │ Int8 :: Identifier │ │ [call] │ │ inbounds_getindex :: Identifier │ │ [.] │ │ it :: Identifier │ │ [inert] │ │ seq :: Identifier │ │ i :: Identifier │ │ [macrocall] │ │ @inbounds :: Identifier │ │ :(#= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:178 =#) :: Value │ │ [=] │ │ val :: Identifier │ │ [ref] │ │ kmerbits :: Identifier │ │ [call] │ │ + :: Identifier │ │ nt :: Identifier │ │ 1 :: Value │ │ [=] │ │ kmer :: Identifier │ │ [call] │ │ | :: Identifier │ │ [call] │ │ << :: Identifier │ │ kmer :: Identifier │ │ 2 :: Value │ │ val :: Identifier │ │ [=] │ │ filled :: Identifier │ │ [call] │ │ ifelse :: Identifier │ │ [call] │ │ == :: Identifier │ │ val :: Identifier │ │ 0xff :: Value │ │ 0 :: Value │ │ [call] │ │ + :: Identifier │ │ filled :: Identifier │ │ 1 :: Value │ │ [if] │ │ [call] │ │ == :: Identifier │ │ filled :: Identifier │ │ [call] │ │ kmersize :: Identifier │ │ T :: Identifier │ │ [block] │ │ [=] │ │ pos :: Identifier │ │ [call] │ │ + :: Identifier │ │ [call] │ │ - :: Identifier │ │ i :: Identifier │ │ [call] │ │ kmersize :: Identifier │ │ T :: Identifier │ │ 1 :: Value │ │ [return] │ │ [tuple] │ │ [tuple] │ │ pos :: Identifier │ │ [call] │ │ T :: Identifier │ │ kmer :: Identifier │ │ [tuple] │ │ i :: Identifier │ │ [call] │ │ kmersize :: Identifier │ │ T :: Identifier │ │ kmer :: Identifier │ │ [unknown_head] │ │ i :: Identifier │ │ 1 :: Value │ │ [return] │ │ nothing :: Identifier │ │ │ st1 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ [function] │ │ [where] │ │ [call] │ │ [.] │ │ Base :: Identifier │ scope_layer=1 │ [inert] │ │ iterate :: Identifier │ │ [::] │ │ it :: Identifier │ scope_layer=1 │ [curly] │ │ EveryKmerIterator :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ S :: Identifier │ scope_layer=1 │ [kw] │ │ state :: Identifier │ scope_layer=1 │ [tuple] │ │ [call] │ │ - :: Identifier │ scope_layer=1 │ [.] │ │ it :: Identifier │ scope_layer=1 │ [inert] │ │ start :: Identifier │ │ 1 :: Value │ │ 1 :: Value │ │ [call] │ │ UInt64 :: Identifier │ scope_layer=1 │ 0 :: Value │ │ T :: Identifier │ scope_layer=1 │ [<:] │ scope_layer=1 │ S :: Identifier │ scope_layer=1 │ [curly] │ │ Union :: Identifier │ scope_layer=1 │ ReferenceSequence :: Identifier │ scope_layer=1 │ [curly] │ │ BioSequence :: Identifier │ scope_layer=1 │ [<:] │ scope_layer=1 │ FourBitNucs :: Identifier │ scope_layer=1 │ [block] │ │ [=] │ │ [tuple] │ │ i :: Identifier │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ kmer :: Identifier │ scope_layer=1 │ state :: Identifier │ scope_layer=1 │ [unknown_head] │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ 1 :: Value │ │ [unknown_head] │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ 1 :: Value │ │ [while] │ │ [call] │ │ ≤ :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [.] │ │ it :: Identifier │ scope_layer=1 │ [inert] │ │ stop :: Identifier │ │ [block] │ │ [=] │ │ nt :: Identifier │ scope_layer=1 │ [call] │ │ reinterpret :: Identifier │ scope_layer=1 │ Int8 :: Identifier │ scope_layer=1 │ [call] │ │ inbounds_getindex :: Identifier │ scope_layer=1 │ [.] │ │ it :: Identifier │ scope_layer=1 │ [inert] │ │ seq :: Identifier │ │ i :: Identifier │ scope_layer=1 │ [block] │ │ [inbounds] │ macro_source=78 │ true :: Value │ macro_source=78 │ [local] │ │ [=] │ │ val :: Identifier │ scope_layer=2 │ [=] │ │ val :: Identifier │ scope_layer=1 │ [ref] │ │ kmerbits :: Identifier │ scope_layer=1 │ [call] │ │ + :: Identifier │ scope_layer=1 │ nt :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=78 │ [inbounds] │ │ pop :: Identifier │ scope_layer=2 │ val :: Identifier │ scope_layer=2 │ [=] │ │ kmer :: Identifier │ scope_layer=1 │ [call] │ │ | :: Identifier │ scope_layer=1 │ [call] │ │ << :: Identifier │ scope_layer=1 │ kmer :: Identifier │ scope_layer=1 │ 2 :: Value │ │ val :: Identifier │ scope_layer=1 │ [=] │ │ filled :: Identifier │ scope_layer=1 │ [call] │ │ ifelse :: Identifier │ scope_layer=1 │ [call] │ │ == :: Identifier │ scope_layer=1 │ val :: Identifier │ scope_layer=1 │ 0xff :: Value │ │ 0 :: Value │ │ [call] │ │ + :: Identifier │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ 1 :: Value │ │ [if] │ │ [call] │ │ == :: Identifier │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ [call] │ │ kmersize :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ [block] │ │ [=] │ │ pos :: Identifier │ scope_layer=1 │ [call] │ │ + :: Identifier │ scope_layer=1 │ [call] │ │ - :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [call] │ │ kmersize :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ 1 :: Value │ │ [return] │ │ [tuple] │ │ [tuple] │ │ pos :: Identifier │ scope_layer=1 │ [call] │ │ T :: Identifier │ scope_layer=1 │ kmer :: Identifier │ scope_layer=1 │ [tuple] │ │ i :: Identifier │ scope_layer=1 │ [call] │ │ kmersize :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ kmer :: Identifier │ scope_layer=1 │ [unknown_head] │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ 1 :: Value │ │ [return] │ │ nothing :: Identifier │ scope_layer=1 │ │ file = "/home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl" │ line = 170 └ mod = BioSequences ERROR: LoadError: internal lowering bug: #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:170 =# - `jl_assert(!(haskey(ssa_rewrites, lhs_id)), _)`: multiple assignments to ssavalue Expression:  (= #₁ (call core.TypeVar :#T1 #₇₅/FourBitNucs)) Containing expressions:  (= #₁ (call core.TypeVar :#T1 #₇₅/FourBitNucs))  Detailed provenance:  (= #₁ (call core.TypeVar :#T1 #₇₅/FourBitNucs)) @#= /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:366 =#  └─ (= #₁ (call core.TypeVar :#T1 #₁₃/FourBitNucs)) @#= /source/usr/share/julia/JuliaLowering/src/closure_conversion.jl:197 =#  └─ (= #₁ (call core.TypeVar :#T1 #₁₃/FourBitNucs)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 FourBitNucs)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 FourBitNucs))  └─ (call core.TypeVar :#T1 FourBitNucs) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3025 =#  └─ (<: FourBitNucs)  └─ (<: FourBitNucs)  └─ (<: FourBitNucs)  └─ (<: FourBitNucs)  └─ @ /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:170  Stacktrace:  [1] iterate(A::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}})  @ Base /source/usr/share/julia/JuliaLowering/src/ast.jl:23 [inlined]  [2] renumber_body(ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, input_code::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, slot_rewrites::Dict{Int64, Int64})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1106  [3] compile_lambda(outer_ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1223  [4] linearize_ir(ctx::Base.JuliaLowering.ClosureConversionCtx{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1253  [5] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:33  [6] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [7] top-level scope  @ ~/.julia/packages/BioSequences/7i86L/src/BioSequences.jl:212  [8] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [10] top-level scope  @ stdin:5  [11] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [13] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [14] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [15] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:170 in expression starting at /home/pkgeval/.julia/packages/BioSequences/7i86L/src/BioSequences.jl:9 in expression starting at stdin:5 ✗ BioSequences ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/GeneticVariation/1wh3b/src/GeneticVariation.jl:46  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/GeneticVariation/1wh3b/src/GeneticVariation.jl:11 in expression starting at stdin:5 ✗ GeneticVariation 22 dependencies successfully precompiled in 1732 seconds. 14 already precompiled. 1 dependency had output during precompilation: ┌ BioSymbols │ WARNING: Constructor for type "Char" was extended in `BioSymbols` without explicit qualification or import. │ NOTE: Assumed "Char" refers to `Base.Char`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Char end`. │ Hint: To silence the warning, qualify `Char` as `Base.Char` in the method signature or explicitly `import Base: Char`. └ Precompilation completed after 1737.1s ################################################################################ # Loading # Loading GeneticVariation... WARNING: Constructor for type "UInt64" was extended in `BioSequences` without explicit qualification or import.  NOTE: Assumed "UInt64" refers to `Base.UInt64`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function UInt64 end`.  Hint: To silence the warning, qualify `UInt64` as `Base.UInt64` in the method signature or explicitly `import Base: UInt64`. ┌ Info: JuliaLowering threw given input: │ code = │ :(function Base.iterate(it::EveryKmerIterator{T, S}, state = (it.start - 1, 1, UInt64(0))) where {T, S <: Union{ReferenceSequence, BioSequence{<:FourBitNucs}}} │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:170 =# │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:172 =# │ (i, filled, kmer) = state │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:173 =# │ i += 1 │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:174 =# │ filled -= 1 │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:176 =# │ while i ≤ it.stop │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:177 =# │ nt = reinterpret(Int8, inbounds_getindex(it.seq, i)) │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:178 =# │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:178 =# @inbounds val = kmerbits[nt + 1] │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:179 =# │ kmer = kmer << 2 | val │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:180 =# │ filled = ifelse(val == 0xff, 0, filled + 1) │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:182 =# │ if filled == kmersize(T) │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:183 =# │ pos = (i - kmersize(T)) + 1 │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:184 =# │ return ((pos, T(kmer)), (i, kmersize(T), kmer)) │ end │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:186 =# │ i += 1 │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:187 =# │ end │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:188 =# │ return nothing │ end) │ st0 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ [function] │ │ [where] │ │ [call] │ │ [.] │ │ Base :: Identifier │ │ [inert] │ │ iterate :: Identifier │ │ [::] │ │ it :: Identifier │ │ [curly] │ │ EveryKmerIterator :: Identifier │ │ T :: Identifier │ │ S :: Identifier │ │ [kw] │ │ state :: Identifier │ │ [tuple] │ │ [call] │ │ - :: Identifier │ │ [.] │ │ it :: Identifier │ │ [inert] │ │ start :: Identifier │ │ 1 :: Value │ │ 1 :: Value │ │ [call] │ │ UInt64 :: Identifier │ │ 0 :: Value │ │ T :: Identifier │ │ [<:] │ │ S :: Identifier │ │ [curly] │ │ Union :: Identifier │ │ ReferenceSequence :: Identifier │ │ [curly] │ │ BioSequence :: Identifier │ │ [<:] │ │ FourBitNucs :: Identifier │ │ [block] │ │ [=] │ │ [tuple] │ │ i :: Identifier │ │ filled :: Identifier │ │ kmer :: Identifier │ │ state :: Identifier │ │ [unknown_head] │ │ i :: Identifier │ │ 1 :: Value │ │ [unknown_head] │ │ filled :: Identifier │ │ 1 :: Value │ │ [while] │ │ [call] │ │ ≤ :: Identifier │ │ i :: Identifier │ │ [.] │ │ it :: Identifier │ │ [inert] │ │ stop :: Identifier │ │ [block] │ │ [=] │ │ nt :: Identifier │ │ [call] │ │ reinterpret :: Identifier │ │ Int8 :: Identifier │ │ [call] │ │ inbounds_getindex :: Identifier │ │ [.] │ │ it :: Identifier │ │ [inert] │ │ seq :: Identifier │ │ i :: Identifier │ │ [macrocall] │ │ @inbounds :: Identifier │ │ :(#= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:178 =#) :: Value │ │ [=] │ │ val :: Identifier │ │ [ref] │ │ kmerbits :: Identifier │ │ [call] │ │ + :: Identifier │ │ nt :: Identifier │ │ 1 :: Value │ │ [=] │ │ kmer :: Identifier │ │ [call] │ │ | :: Identifier │ │ [call] │ │ << :: Identifier │ │ kmer :: Identifier │ │ 2 :: Value │ │ val :: Identifier │ │ [=] │ │ filled :: Identifier │ │ [call] │ │ ifelse :: Identifier │ │ [call] │ │ == :: Identifier │ │ val :: Identifier │ │ 0xff :: Value │ │ 0 :: Value │ │ [call] │ │ + :: Identifier │ │ filled :: Identifier │ │ 1 :: Value │ │ [if] │ │ [call] │ │ == :: Identifier │ │ filled :: Identifier │ │ [call] │ │ kmersize :: Identifier │ │ T :: Identifier │ │ [block] │ │ [=] │ │ pos :: Identifier │ │ [call] │ │ + :: Identifier │ │ [call] │ │ - :: Identifier │ │ i :: Identifier │ │ [call] │ │ kmersize :: Identifier │ │ T :: Identifier │ │ 1 :: Value │ │ [return] │ │ [tuple] │ │ [tuple] │ │ pos :: Identifier │ │ [call] │ │ T :: Identifier │ │ kmer :: Identifier │ │ [tuple] │ │ i :: Identifier │ │ [call] │ │ kmersize :: Identifier │ │ T :: Identifier │ │ kmer :: Identifier │ │ [unknown_head] │ │ i :: Identifier │ │ 1 :: Value │ │ [return] │ │ nothing :: Identifier │ │ │ st1 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ [function] │ │ [where] │ │ [call] │ │ [.] │ │ Base :: Identifier │ scope_layer=1 │ [inert] │ │ iterate :: Identifier │ │ [::] │ │ it :: Identifier │ scope_layer=1 │ [curly] │ │ EveryKmerIterator :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ S :: Identifier │ scope_layer=1 │ [kw] │ │ state :: Identifier │ scope_layer=1 │ [tuple] │ │ [call] │ │ - :: Identifier │ scope_layer=1 │ [.] │ │ it :: Identifier │ scope_layer=1 │ [inert] │ │ start :: Identifier │ │ 1 :: Value │ │ 1 :: Value │ │ [call] │ │ UInt64 :: Identifier │ scope_layer=1 │ 0 :: Value │ │ T :: Identifier │ scope_layer=1 │ [<:] │ scope_layer=1 │ S :: Identifier │ scope_layer=1 │ [curly] │ │ Union :: Identifier │ scope_layer=1 │ ReferenceSequence :: Identifier │ scope_layer=1 │ [curly] │ │ BioSequence :: Identifier │ scope_layer=1 │ [<:] │ scope_layer=1 │ FourBitNucs :: Identifier │ scope_layer=1 │ [block] │ │ [=] │ │ [tuple] │ │ i :: Identifier │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ kmer :: Identifier │ scope_layer=1 │ state :: Identifier │ scope_layer=1 │ [unknown_head] │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ 1 :: Value │ │ [unknown_head] │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ 1 :: Value │ │ [while] │ │ [call] │ │ ≤ :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [.] │ │ it :: Identifier │ scope_layer=1 │ [inert] │ │ stop :: Identifier │ │ [block] │ │ [=] │ │ nt :: Identifier │ scope_layer=1 │ [call] │ │ reinterpret :: Identifier │ scope_layer=1 │ Int8 :: Identifier │ scope_layer=1 │ [call] │ │ inbounds_getindex :: Identifier │ scope_layer=1 │ [.] │ │ it :: Identifier │ scope_layer=1 │ [inert] │ │ seq :: Identifier │ │ i :: Identifier │ scope_layer=1 │ [block] │ │ [inbounds] │ macro_source=78 │ true :: Value │ macro_source=78 │ [local] │ │ [=] │ │ val :: Identifier │ scope_layer=2 │ [=] │ │ val :: Identifier │ scope_layer=1 │ [ref] │ │ kmerbits :: Identifier │ scope_layer=1 │ [call] │ │ + :: Identifier │ scope_layer=1 │ nt :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=78 │ [inbounds] │ │ pop :: Identifier │ scope_layer=2 │ val :: Identifier │ scope_layer=2 │ [=] │ │ kmer :: Identifier │ scope_layer=1 │ [call] │ │ | :: Identifier │ scope_layer=1 │ [call] │ │ << :: Identifier │ scope_layer=1 │ kmer :: Identifier │ scope_layer=1 │ 2 :: Value │ │ val :: Identifier │ scope_layer=1 │ [=] │ │ filled :: Identifier │ scope_layer=1 │ [call] │ │ ifelse :: Identifier │ scope_layer=1 │ [call] │ │ == :: Identifier │ scope_layer=1 │ val :: Identifier │ scope_layer=1 │ 0xff :: Value │ │ 0 :: Value │ │ [call] │ │ + :: Identifier │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ 1 :: Value │ │ [if] │ │ [call] │ │ == :: Identifier │ scope_layer=1 │ filled :: Identifier │ scope_layer=1 │ [call] │ │ kmersize :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ [block] │ │ [=] │ │ pos :: Identifier │ scope_layer=1 │ [call] │ │ + :: Identifier │ scope_layer=1 │ [call] │ │ - :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [call] │ │ kmersize :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ 1 :: Value │ │ [return] │ │ [tuple] │ │ [tuple] │ │ pos :: Identifier │ scope_layer=1 │ [call] │ │ T :: Identifier │ scope_layer=1 │ kmer :: Identifier │ scope_layer=1 │ [tuple] │ │ i :: Identifier │ scope_layer=1 │ [call] │ │ kmersize :: Identifier │ scope_layer=1 │ T :: Identifier │ scope_layer=1 │ kmer :: Identifier │ scope_layer=1 │ [unknown_head] │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ 1 :: Value │ │ [return] │ │ nothing :: Identifier │ scope_layer=1 │ │ file = "/home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl" │ line = 170 └ mod = BioSequences ERROR: LoadError: internal lowering bug: #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:170 =# - `jl_assert(!(haskey(ssa_rewrites, lhs_id)), _)`: multiple assignments to ssavalue Expression:  (= #₁ (call core.TypeVar :#T1 #₇₅/FourBitNucs)) Containing expressions:  (= #₁ (call core.TypeVar :#T1 #₇₅/FourBitNucs))  Detailed provenance:  (= #₁ (call core.TypeVar :#T1 #₇₅/FourBitNucs)) @#= /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:366 =#  └─ (= #₁ (call core.TypeVar :#T1 #₁₃/FourBitNucs)) @#= /source/usr/share/julia/JuliaLowering/src/closure_conversion.jl:197 =#  └─ (= #₁ (call core.TypeVar :#T1 #₁₃/FourBitNucs)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 FourBitNucs)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 FourBitNucs))  └─ (call core.TypeVar :#T1 FourBitNucs) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3025 =#  └─ (<: FourBitNucs)  └─ (<: FourBitNucs)  └─ (<: FourBitNucs)  └─ (<: FourBitNucs)  └─ @ /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:170  Stacktrace:  [1] iterate(A::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}})  @ Base /source/usr/share/julia/JuliaLowering/src/ast.jl:23 [inlined]  [2] renumber_body(ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, input_code::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, slot_rewrites::Dict{Int64, Int64})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1106  [3] compile_lambda(outer_ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1223  [4] linearize_ir(ctx::Base.JuliaLowering.ClosureConversionCtx{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1253  [5] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:33  [6] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [7] top-level scope  @ ~/.julia/packages/BioSequences/7i86L/src/BioSequences.jl:212  [8] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [10] top-level scope  @ stdin:5  [11] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [13] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [14] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [15] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:170 in expression starting at /home/pkgeval/.julia/packages/BioSequences/7i86L/src/BioSequences.jl:9 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/GeneticVariation/1wh3b/src/GeneticVariation.jl:46  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/GeneticVariation/1wh3b/src/GeneticVariation.jl:11 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ BioSequences │ WARNING: Constructor for type "UInt64" was extended in `BioSequences` without explicit qualification or import. │ NOTE: Assumed "UInt64" refers to `Base.UInt64`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UInt64 end`. │ Hint: To silence the warning, qualify `UInt64` as `Base.UInt64` in the method signature or explicitly `import Base: UInt64`. │ ┌ Info: JuliaLowering threw given input: │ │ code = │ │ :(function Base.iterate(it::EveryKmerIterator{T, S}, state = (it.start - 1, 1, UInt64(0))) where {T, S <: Union{ReferenceSequence, BioSequence{<:FourBitNucs}}} │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:170 =# │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:172 =# │ │ (i, filled, kmer) = state │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:173 =# │ │ i += 1 │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:174 =# │ │ filled -= 1 │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:176 =# │ │ while i ≤ it.stop │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:177 =# │ │ nt = reinterpret(Int8, inbounds_getindex(it.seq, i)) │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:178 =# │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:178 =# @inbounds val = kmerbits[nt + 1] │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:179 =# │ │ kmer = kmer << 2 | val │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:180 =# │ │ filled = ifelse(val == 0xff, 0, filled + 1) │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:182 =# │ │ if filled == kmersize(T) │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:183 =# │ │ pos = (i - kmersize(T)) + 1 │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:184 =# │ │ return ((pos, T(kmer)), (i, kmersize(T), kmer)) │ │ end │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:186 =# │ │ i += 1 │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:187 =# │ │ end │ │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:188 =# │ │ return nothing │ │ end) │ │ st0 = │ │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ │ [function] │ │ │ [where] │ │ │ [call] │ │ │ [.] │ │ │ Base :: Identifier │ │ │ [inert] │ │ │ iterate :: Identifier │ │ │ [::] │ │ │ it :: Identifier │ │ │ [curly] │ │ │ EveryKmerIterator :: Identifier │ │ │ T :: Identifier │ │ │ S :: Identifier │ │ │ [kw] │ │ │ state :: Identifier │ │ │ [tuple] │ │ │ [call] │ │ │ - :: Identifier │ │ │ [.] │ │ │ it :: Identifier │ │ │ [inert] │ │ │ start :: Identifier │ │ │ 1 :: Value │ │ │ 1 :: Value │ │ │ [call] │ │ │ UInt64 :: Identifier │ │ │ 0 :: Value │ │ │ T :: Identifier │ │ │ [<:] │ │ │ S :: Identifier │ │ │ [curly] │ │ │ Union :: Identifier │ │ │ ReferenceSequence :: Identifier │ │ │ [curly] │ │ │ BioSequence :: Identifier │ │ │ [<:] │ │ │ FourBitNucs :: Identifier │ │ │ [block] │ │ │ [=] │ │ │ [tuple] │ │ │ i :: Identifier │ │ │ filled :: Identifier │ │ │ kmer :: Identifier │ │ │ state :: Identifier │ │ │ [unknown_head] │ │ │ i :: Identifier │ │ │ 1 :: Value │ │ │ [unknown_head] │ │ │ filled :: Identifier │ │ │ 1 :: Value │ │ │ [while] │ │ │ [call] │ │ │ ≤ :: Identifier │ │ │ i :: Identifier │ │ │ [.] │ │ │ it :: Identifier │ │ │ [inert] │ │ │ stop :: Identifier │ │ │ [block] │ │ │ [=] │ │ │ nt :: Identifier │ │ │ [call] │ │ │ reinterpret :: Identifier │ │ │ Int8 :: Identifier │ │ │ [call] │ │ │ inbounds_getindex :: Identifier │ │ │ [.] │ │ │ it :: Identifier │ │ │ [inert] │ │ │ seq :: Identifier │ │ │ i :: Identifier │ │ │ [macrocall] │ │ │ @inbounds :: Identifier │ │ │ :(#= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:178 =#) :: Value │ │ │ [=] │ │ │ val :: Identifier │ │ │ [ref] │ │ │ kmerbits :: Identifier │ │ │ [call] │ │ │ + :: Identifier │ │ │ nt :: Identifier │ │ │ 1 :: Value │ │ │ [=] │ │ │ kmer :: Identifier │ │ │ [call] │ │ │ | :: Identifier │ │ │ [call] │ │ │ << :: Identifier │ │ │ kmer :: Identifier │ │ │ 2 :: Value │ │ │ val :: Identifier │ │ │ [=] │ │ │ filled :: Identifier │ │ │ [call] │ │ │ ifelse :: Identifier │ │ │ [call] │ │ │ == :: Identifier │ │ │ val :: Identifier │ │ │ 0xff :: Value │ │ │ 0 :: Value │ │ │ [call] │ │ │ + :: Identifier │ │ │ filled :: Identifier │ │ │ 1 :: Value │ │ │ [if] │ │ │ [call] │ │ │ == :: Identifier │ │ │ filled :: Identifier │ │ │ [call] │ │ │ kmersize :: Identifier │ │ │ T :: Identifier │ │ │ [block] │ │ │ [=] │ │ │ pos :: Identifier │ │ │ [call] │ │ │ + :: Identifier │ │ │ [call] │ │ │ - :: Identifier │ │ │ i :: Identifier │ │ │ [call] │ │ │ kmersize :: Identifier │ │ │ T :: Identifier │ │ │ 1 :: Value │ │ │ [return] │ │ │ [tuple] │ │ │ [tuple] │ │ │ pos :: Identifier │ │ │ [call] │ │ │ T :: Identifier │ │ │ kmer :: Identifier │ │ │ [tuple] │ │ │ i :: Identifier │ │ │ [call] │ │ │ kmersize :: Identifier │ │ │ T :: Identifier │ │ │ kmer :: Identifier │ │ │ [unknown_head] │ │ │ i :: Identifier │ │ │ 1 :: Value │ │ │ [return] │ │ │ nothing :: Identifier │ │ │ │ │ st1 = │ │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ │ [function] │ │ │ [where] │ │ │ [call] │ │ │ [.] │ │ │ Base :: Identifier │ scope_layer=1 │ │ [inert] │ │ │ iterate :: Identifier │ │ │ [::] │ │ │ it :: Identifier │ scope_layer=1 │ │ [curly] │ │ │ EveryKmerIterator :: Identifier │ scope_layer=1 │ │ T :: Identifier │ scope_layer=1 │ │ S :: Identifier │ scope_layer=1 │ │ [kw] │ │ │ state :: Identifier │ scope_layer=1 │ │ [tuple] │ │ │ [call] │ │ │ - :: Identifier │ scope_layer=1 │ │ [.] │ │ │ it :: Identifier │ scope_layer=1 │ │ [inert] │ │ │ start :: Identifier │ │ │ 1 :: Value │ │ │ 1 :: Value │ │ │ [call] │ │ │ UInt64 :: Identifier │ scope_layer=1 │ │ 0 :: Value │ │ │ T :: Identifier │ scope_layer=1 │ │ [<:] │ scope_layer=1 │ │ S :: Identifier │ scope_layer=1 │ │ [curly] │ │ │ Union :: Identifier │ scope_layer=1 │ │ ReferenceSequence :: Identifier │ scope_layer=1 │ │ [curly] │ │ │ BioSequence :: Identifier │ scope_layer=1 │ │ [<:] │ scope_layer=1 │ │ FourBitNucs :: Identifier │ scope_layer=1 │ │ [block] │ │ │ [=] │ │ │ [tuple] │ │ │ i :: Identifier │ scope_layer=1 │ │ filled :: Identifier │ scope_layer=1 │ │ kmer :: Identifier │ scope_layer=1 │ │ state :: Identifier │ scope_layer=1 │ │ [unknown_head] │ scope_layer=1 │ │ i :: Identifier │ scope_layer=1 │ │ 1 :: Value │ │ │ [unknown_head] │ scope_layer=1 │ │ filled :: Identifier │ scope_layer=1 │ │ 1 :: Value │ │ │ [while] │ │ │ [call] │ │ │ ≤ :: Identifier │ scope_layer=1 │ │ i :: Identifier │ scope_layer=1 │ │ [.] │ │ │ it :: Identifier │ scope_layer=1 │ │ [inert] │ │ │ stop :: Identifier │ │ │ [block] │ │ │ [=] │ │ │ nt :: Identifier │ scope_layer=1 │ │ [call] │ │ │ reinterpret :: Identifier │ scope_layer=1 │ │ Int8 :: Identifier │ scope_layer=1 │ │ [call] │ │ │ inbounds_getindex :: Identifier │ scope_layer=1 │ │ [.] │ │ │ it :: Identifier │ scope_layer=1 │ │ [inert] │ │ │ seq :: Identifier │ │ │ i :: Identifier │ scope_layer=1 │ │ [block] │ │ │ [inbounds] │ macro_source=78 │ │ true :: Value │ macro_source=78 │ │ [local] │ │ │ [=] │ │ │ val :: Identifier │ scope_layer=2 │ │ [=] │ │ │ val :: Identifier │ scope_layer=1 │ │ [ref] │ │ │ kmerbits :: Identifier │ scope_layer=1 │ │ [call] │ │ │ + :: Identifier │ scope_layer=1 │ │ nt :: Identifier │ scope_layer=1 │ │ 1 :: Value │ macro_source=78 │ │ [inbounds] │ │ │ pop :: Identifier │ scope_layer=2 │ │ val :: Identifier │ scope_layer=2 │ │ [=] │ │ │ kmer :: Identifier │ scope_layer=1 │ │ [call] │ │ │ | :: Identifier │ scope_layer=1 │ │ [call] │ │ │ << :: Identifier │ scope_layer=1 │ │ kmer :: Identifier │ scope_layer=1 │ │ 2 :: Value │ │ │ val :: Identifier │ scope_layer=1 │ │ [=] │ │ │ filled :: Identifier │ scope_layer=1 │ │ [call] │ │ │ ifelse :: Identifier │ scope_layer=1 │ │ [call] │ │ │ == :: Identifier │ scope_layer=1 │ │ val :: Identifier │ scope_layer=1 │ │ 0xff :: Value │ │ │ 0 :: Value │ │ │ [call] │ │ │ + :: Identifier │ scope_layer=1 │ │ filled :: Identifier │ scope_layer=1 │ │ 1 :: Value │ │ │ [if] │ │ │ [call] │ │ │ == :: Identifier │ scope_layer=1 │ │ filled :: Identifier │ scope_layer=1 │ │ [call] │ │ │ kmersize :: Identifier │ scope_layer=1 │ │ T :: Identifier │ scope_layer=1 │ │ [block] │ │ │ [=] │ │ │ pos :: Identifier │ scope_layer=1 │ │ [call] │ │ │ + :: Identifier │ scope_layer=1 │ │ [call] │ │ │ - :: Identifier │ scope_layer=1 │ │ i :: Identifier │ scope_layer=1 │ │ [call] │ │ │ kmersize :: Identifier │ scope_layer=1 │ │ T :: Identifier │ scope_layer=1 │ │ 1 :: Value │ │ │ [return] │ │ │ [tuple] │ │ │ [tuple] │ │ │ pos :: Identifier │ scope_layer=1 │ │ [call] │ │ │ T :: Identifier │ scope_layer=1 │ │ kmer :: Identifier │ scope_layer=1 │ │ [tuple] │ │ │ i :: Identifier │ scope_layer=1 │ │ [call] │ │ │ kmersize :: Identifier │ scope_layer=1 │ │ T :: Identifier │ scope_layer=1 │ │ kmer :: Identifier │ scope_layer=1 │ │ [unknown_head] │ scope_layer=1 │ │ i :: Identifier │ scope_layer=1 │ │ 1 :: Value │ │ │ [return] │ │ │ nothing :: Identifier │ scope_layer=1 │ │ │ │ file = "/home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl" │ │ line = 170 │ └ mod = BioSequences │ ERROR: LoadError: internal lowering bug: │ #= /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:170 =# - `jl_assert(!(haskey(ssa_rewrites, lhs_id)), _)`: multiple assignments to ssavalue │ Expression: │ (= #₁ (call core.TypeVar :#T1 #₇₅/FourBitNucs)) │ Containing expressions: │ (= #₁ (call core.TypeVar :#T1 #₇₅/FourBitNucs)) │ │ Detailed provenance: │ (= #₁ (call core.TypeVar :#T1 #₇₅/FourBitNucs)) @#= /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:366 =# │ └─ (= #₁ (call core.TypeVar :#T1 #₁₃/FourBitNucs)) @#= /source/usr/share/julia/JuliaLowering/src/closure_conversion.jl:197 =# │ └─ (= #₁ (call core.TypeVar :#T1 #₁₃/FourBitNucs)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =# │ └─ (= #₁ (call core.TypeVar :#T1 FourBitNucs)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =# │ └─ (= #₁ (call core.TypeVar :#T1 FourBitNucs)) │ └─ (call core.TypeVar :#T1 FourBitNucs) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3025 =# │ └─ (<: FourBitNucs) │ └─ (<: FourBitNucs) │ └─ (<: FourBitNucs) │ └─ (<: FourBitNucs) │ └─ @ /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:170 │ │ Stacktrace: │ [1] iterate(A::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}) │ @ Base /source/usr/share/julia/JuliaLowering/src/ast.jl:23 [inlined] │ [2] renumber_body(ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, input_code::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, slot_rewrites::Dict{Int64, Int64}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1106 │ [3] compile_lambda(outer_ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1223 │ [4] linearize_ir(ctx::Base.JuliaLowering.ClosureConversionCtx{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1253 │ [5] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:33 │ [6] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:327 │ [7] top-level scope │ @ ~/.julia/packages/BioSequences/7i86L/src/BioSequences.jl:212 │ [8] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [10] top-level scope │ @ stdin:5 │ [11] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [13] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [14] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [15] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/BioSequences/7i86L/src/eachkmer.jl:170 │ in expression starting at /home/pkgeval/.julia/packages/BioSequences/7i86L/src/BioSequences.jl:9 │ in expression starting at stdin:5 └ ┌ GeneticVariation │ [Output was shown above] └ ERROR: The following 2 packages failed to precompile: BioSequences Failed to precompile BioSequences [7e6ae17a-c86d-528c-b3b9-7f778a29fe59] to "/home/pkgeval/.julia/compiled/v1.14/BioSequences/jl_yaDmTQ" (ProcessExited(1)). GeneticVariation Failed to precompile GeneticVariation [9bc6ac9d-e6b2-5f70-b0a8-242a01662520] to "/home/pkgeval/.julia/compiled/v1.14/GeneticVariation/jl_IOV7te" (ProcessExited(1)). Loading failed after 305.02s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --check-bounds=yes --pkgimages=existing -e 'using GeneticVariation'`, ProcessExited(1)) [1] Stacktrace: [1] spawn_opts_inherit() @ Base ./process.jl:612 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:525 [3] run(::Cmd) @ Base ./process.jl:522 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:197 [5] include(mod::Module, _path::String) @ Base ./Base.jl:326 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:355 [7] _start() @ Base ./client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:188 PkgEval failed after 2094.25s: package fails to precompile