Package evaluation to test BurrowsWheelerAligner on Julia 1.14.0-DEV.2226 (797a5ef2b0*) started at 2026-05-24T00:21:07.975 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.78s ################################################################################ # Installation # Installing BurrowsWheelerAligner... Resolving package versions... Installed Indexes ─────────────── v0.1.3 Installed CodecZlib ───────────── v0.7.8 Installed GenomicFeatures ─────── v2.1.0 Installed OrderedCollections ──── v1.8.1 Installed TranscodingStreams ──── v0.9.13 Installed StringViews ─────────── v1.3.7 Installed BWA_jll ─────────────── v0.7.17+1 Installed DataStructures ──────── v0.18.22 Installed Twiddle ─────────────── v1.1.2 Installed BioAlignments ───────── v3.1.0 Installed Compat ──────────────── v4.18.1 Installed BioGenerics ─────────── v0.1.5 Installed SIMD ────────────────── v3.7.2 Installed BioSymbols ──────────── v5.2.0 Installed XAM ─────────────────── v0.4.2 Installed PrecompileTools ─────── v1.3.4 Installed FASTX ───────────────── v2.1.7 Installed BGZFStreams ─────────── v0.3.2 Installed BurrowsWheelerAligner ─ v0.1.4 Installed Automa ──────────────── v1.1.0 Installed JLLWrappers ─────────── v1.8.0 Installed BioSequences ────────── v3.5.1 Installed Preferences ─────────── v1.5.2 Installed IntervalTrees ───────── v1.1.0 Installing 1 artifacts Installed artifact BWA 530.2 KiB Updating `~/.julia/environments/v1.14/Project.toml` [231d3afb] + BurrowsWheelerAligner v0.1.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [67c07d97] + Automa v1.1.0 [28d598bf] + BGZFStreams v0.3.2 [00701ae9] + BioAlignments v3.1.0 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.1 [3c28c6f8] + BioSymbols v5.2.0 [231d3afb] + BurrowsWheelerAligner v0.1.4 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 ⌅ [864edb3b] + DataStructures v0.18.22 [c2308a5c] + FASTX v2.1.7 ⌅ [899a7d2d] + GenomicFeatures v2.1.0 ⌅ [4ffb77ac] + Indexes v0.1.3 [524e6230] + IntervalTrees v1.1.0 [692b3bcd] + JLLWrappers v1.8.0 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [fdea26ae] + SIMD v3.7.2 [354b36f9] + StringViews v1.3.7 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [7200193e] + Twiddle v1.1.2 [d759349c] + XAM v0.4.2 [f8ebc3b1] + BWA_jll v0.7.17+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] + LibCURL_jll v8.20.0+1 [e37daf67] + LibGit2_jll v1.9.3+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.5.14 [4536629a] + OpenBLAS_jll v0.3.33+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.94s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 5.5 s ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 148.6 s ✓ OrderedCollections 0.7 s ✓ Twiddle 283.3 s ✓ StringViews 100.8 s ✓ IntervalTrees 1.3 s ✓ Compat 2.2 s ✓ Preferences 92.1 s ✓ TranscodingStreams 0.6 s ✓ Compat → CompatLinearAlgebraExt 2.8 s ✓ JLLWrappers 2.4 s ✓ PrecompileTools 60.0 s ✓ BioGenerics 39.6 s ✓ CodecZlib 295.3 s ✓ DataStructures 2.8 s ✓ BWA_jll 110.1 s ✓ BioSymbols ┌ Info: JuliaLowering threw given input: │ code = │ :(#= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =# @generated function fneg(x::T, ::F = nothing) where {T <: LT{<:FloatingTypes}, F <: FPFlags} │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =# │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:187 =# │ fpflags = fp_str(F) │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:188 =# │ s = "%2 = fneg $(fpflags) $(llvm_type(T)) %0\nret $(llvm_type(T)) %2\n" │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:192 =# │ return $(Expr(:quote, quote │ $(Expr(:$, :(Expr(:meta, :inline)))) │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:194 =# │ Base.llvmcall($(Expr(:$, :s)), T, Tuple{T}, x) │ end)) │ end) │ st0 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ [macrocall] │ │ @generated :: Identifier │ │ :(#= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =#) :: Value │ │ [function] │ │ [where] │ │ [call] │ │ fneg :: Identifier │ │ [::] │ │ x :: Identifier │ │ T :: Identifier │ │ [kw] │ │ [::] │ │ F :: Identifier │ │ nothing :: Identifier │ │ [<:] │ │ T :: Identifier │ │ [curly] │ │ LT :: Identifier │ │ [<:] │ │ FloatingTypes :: Identifier │ │ [<:] │ │ F :: Identifier │ │ FPFlags :: Identifier │ │ [block] │ │ [=] │ │ fpflags :: Identifier │ │ [call] │ │ fp_str :: Identifier │ │ F :: Identifier │ │ [=] │ │ s :: Identifier │ │ [string] │ │ "%2 = fneg " :: Value │ │ fpflags :: Identifier │ │ " " :: Value │ │ [call] │ │ llvm_type :: Identifier │ │ T :: Identifier │ │ " %0\nret " :: Value │ │ [call] │ │ llvm_type :: Identifier │ │ T :: Identifier │ │ " %2\n" :: Value │ │ [return] │ │ [quote] │ │ [block] │ │ [$] │ │ [call] │ │ Expr :: Identifier │ │ [inert] │ │ meta :: Identifier │ │ [inert] │ │ inline :: Identifier │ │ [call] │ │ [.] │ │ Base :: Identifier │ │ [inert] │ │ llvmcall :: Identifier │ │ [$] │ │ s :: Identifier │ │ T :: Identifier │ │ [curly] │ │ Tuple :: Identifier │ │ T :: Identifier │ │ x :: Identifier │ │ │ st1 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ [function] │ jl_source=L67 │ [where] │ scope_layer=1 │ [call] │ macro_source=65,scope_layer=1 │ fneg :: Identifier │ macro_source=65,scope_layer=1 │ [::] │ macro_source=65,scope_layer=1 │ x :: Identifier │ macro_source=65,scope_layer=1 │ T :: Identifier │ macro_source=65,scope_layer=1 │ [kw] │ macro_source=65,scope_layer=1 │ [::] │ macro_source=65,scope_layer=1 │ F :: Identifier │ macro_source=65,scope_layer=1 │ nothing :: Identifier │ macro_source=65,scope_layer=1 │ [<:] │ scope_layer=1 │ T :: Identifier │ macro_source=65,scope_layer=1 │ [curly] │ scope_layer=1 │ LT :: Identifier │ macro_source=65,scope_layer=1 │ [<:] │ scope_layer=1 │ FloatingTypes :: Identifier │ macro_source=65,scope_layer=1 │ [<:] │ scope_layer=1 │ F :: Identifier │ macro_source=65,scope_layer=1 │ FPFlags :: Identifier │ macro_source=65,scope_layer=1 │ [block] │ jl_source=L67 │ [if] │ jl_source=L67 │ [generated] │ macro_source=65,jl_source=L67 │ [block] │ scope_layer=1 │ [=] │ macro_source=65,scope_layer=1 │ fpflags :: Identifier │ macro_source=65,scope_layer=1 │ [call] │ macro_source=65,scope_layer=1 │ fp_str :: Identifier │ macro_source=65,scope_layer=1 │ F :: Identifier │ macro_source=65,scope_layer=1 │ [=] │ macro_source=65,scope_layer=1 │ s :: Identifier │ macro_source=65,scope_layer=1 │ [string] │ macro_source=65,scope_layer=1 │ "%2 = fneg " :: Value │ macro_source=65,scope_layer=1 │ fpflags :: Identifier │ macro_source=65,scope_layer=1 │ " " :: Value │ macro_source=65,scope_layer=1 │ [call] │ macro_source=65,scope_layer=1 │ llvm_type :: Identifier │ macro_source=65,scope_layer=1 │ T :: Identifier │ macro_source=65,scope_layer=1 │ " %0\nret " :: Value │ macro_source=65,scope_layer=1 │ [call] │ macro_source=65,scope_layer=1 │ llvm_type :: Identifier │ macro_source=65,scope_layer=1 │ T :: Identifier │ macro_source=65,scope_layer=1 │ " %2\n" :: Value │ macro_source=65,scope_layer=1 │ [return] │ scope_layer=1 │ [call] │ jl_source=L67 │ Base.JuliaLowering.interpolate_ast :: Value │ jl_source=L67 │ Expr :: Value │ jl_source=L67 │ [inert] │ jl_source=L67 │ [block] │ │ [$] │ │ [call] │ │ Expr :: Identifier │ │ [inert] │ │ meta :: Identifier │ │ [inert] │ │ inline :: Identifier │ │ [call] │ │ [.] │ │ Base :: Identifier │ │ [inert] │ │ llvmcall :: Identifier │ │ [$] │ │ s :: Identifier │ │ T :: Identifier │ │ [curly] │ │ Tuple :: Identifier │ │ T :: Identifier │ │ x :: Identifier │ │ [tuple] │ jl_source=L31 │ [call] │ scope_layer=1 │ Expr :: Identifier │ macro_source=65,scope_layer=1 │ [inert] │ │ meta :: Identifier │ │ [inert] │ │ inline :: Identifier │ │ [tuple] │ jl_source=L31 │ s :: Identifier │ macro_source=65,scope_layer=1 │ [block] │ jl_source=L67 │ [meta] │ jl_source=L67 │ generated_only :: Identifier │ scope_layer=2,jl_source=L67 │ [return] │ macro_source=65,jl_source=L67 │ nothing :: Value │ macro_source=65,jl_source=L67 │ │ file = "/home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl" │ line = 186 └ mod = SIMD.Intrinsics ERROR: LoadError: internal lowering bug: #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =# - `jl_assert(!(haskey(ssa_rewrites, lhs_id)), _)`: multiple assignments to ssavalue Expression:  (= #₁ (call core.TypeVar :#T1 #₆₅/FloatingTypes)) Containing expressions:  (= #₁ (call core.TypeVar :#T1 #₆₅/FloatingTypes))  Detailed provenance:  (= #₁ (call core.TypeVar :#T1 #₆₅/FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:366 =#  └─ (= #₁ (call core.TypeVar :#T1 #₉/FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/closure_conversion.jl:197 =#  └─ (= #₁ (call core.TypeVar :#T1 #₉/FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 FloatingTypes))  └─ (call core.TypeVar :#T1 FloatingTypes) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3025 =#  └─ (<: FloatingTypes)  └─ (<: FloatingTypes)  └─ (<: FloatingTypes)  ├─ (<: FloatingTypes)  │ └─ @ /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186  └─ (macrocall @generated :(#= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =#) (function (where (call fneg (:: x T) (kw (:: F) nothing)) (<: T (curly LT (<: FloatingTypes))) (<: F FPFlags)) (block (= fpflags (call fp_str F)) (= s (string "%2 = fneg " fpflags " " (call llvm_type T) " %0\nret " (call llvm_type T) " %2\n")) (return (quote (block ($ (call Expr (inert meta) (inert inline))) (call (. Base (inert llvmcall)) ($ s) T (curly Tuple T) x)))))))  └─ @ /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186  Stacktrace:  [1] iterate(A::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}})  @ Base /source/usr/share/julia/JuliaLowering/src/ast.jl:23 [inlined]  [2] renumber_body(ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, input_code::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, slot_rewrites::Dict{Int64, Int64})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1106  [3] compile_lambda(outer_ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1223  [4] linearize_ir(ctx::Base.JuliaLowering.ClosureConversionCtx{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1253  [5] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:33  [6] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [7] top-level scope  @ ~/.julia/packages/SIMD/UiGbs/src/SIMD.jl:23  [8] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [10] top-level scope  @ stdin:5  [11] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [13] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [14] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [15] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:2 in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/SIMD.jl:1 in expression starting at stdin:5 ✗ SIMD 38.7 s ✓ BGZFStreams 200.0 s ✓ GenomicFeatures 109.7 s ✓ BioSequences ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("fdea26ae-647d-5447-a871-4b548cad5224"), "SIMD") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/Automa/EyNRt/src/Automa.jl:4  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/Automa/EyNRt/src/Automa.jl:1 in expression starting at stdin:5 ✗ Automa 127.5 s ✓ Indexes ┌ Info: JuliaLowering threw given input: │ code = │ :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 =# Core.@doc "Defines how to align a given sequence onto a reference sequence.\nThe alignment is represented as a sequence of elementary operations (match, insertion, deletion etc)\nanchored to specific positions of the input and reference sequence.\n" struct Alignment │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:15 =# │ anchors::Vector{AlignmentAnchor} │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:16 =# │ firstref::Int │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:17 =# │ lastref::Int │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =# │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =# @doc (" Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n"->begin │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =# │ function Alignment(anchors::Vector{AlignmentAnchor}, check::Bool = true) │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:25 =# │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:27 =# │ if check │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:28 =# │ check_alignment_anchors(anchors) │ end │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:32 =# │ firstref = 0 │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:33 =# │ for i = 1:length(anchors) │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:34 =# │ if ismatchop((anchors[i]).op) │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:35 =# │ firstref = (anchors[i - 1]).refpos + 1 │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:36 =# │ break │ end │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:38 =# │ end │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:40 =# │ lastref = 0 │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:41 =# │ for i = length(anchors):-1:1 │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:42 =# │ if ismatchop((anchors[i]).op) │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:43 =# │ lastref = (anchors[i]).refpos │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:44 =# │ break │ end │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:46 =# │ end │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:48 =# │ return new(anchors, firstref, lastref) │ end │ end) │ end) │ st0 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ [macrocall] │ │ @doc :: Identifier │ mod │ :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 =#) :: Value │ │ "Defines how to align a given sequence onto a reference sequence.\nThe alignment is represented as a sequence of elementary operations (match, insertion, deletion etc)\nanchored to specific positions of the input and reference sequence.\n" :: Value │ │ [struct] │ │ false :: Value │ │ Alignment :: Identifier │ │ [block] │ │ [::] │ │ anchors :: Identifier │ │ [curly] │ │ Vector :: Identifier │ │ AlignmentAnchor :: Identifier │ │ [::] │ │ firstref :: Identifier │ │ Int :: Identifier │ │ [::] │ │ lastref :: Identifier │ │ Int :: Identifier │ │ [macrocall] │ │ @doc :: Identifier │ │ :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =#) :: Value │ │ [->] │ │ " Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n" :: Value │ │ [block] │ │ [function] │ │ [call] │ │ Alignment :: Identifier │ │ [::] │ │ anchors :: Identifier │ │ [curly] │ │ Vector :: Identifier │ │ AlignmentAnchor :: Identifier │ │ [kw] │ │ [::] │ │ check :: Identifier │ │ Bool :: Identifier │ │ true :: Value │ │ [block] │ │ [if] │ │ check :: Identifier │ │ [block] │ │ [call] │ │ check_alignment_anchors :: Identifier │ │ anchors :: Identifier │ │ [=] │ │ firstref :: Identifier │ │ 0 :: Value │ │ [for] │ │ [=] │ │ i :: Identifier │ │ [call] │ │ : :: Identifier │ │ 1 :: Value │ │ [call] │ │ length :: Identifier │ │ anchors :: Identifier │ │ [block] │ │ [if] │ │ [call] │ │ ismatchop :: Identifier │ │ [.] │ │ [ref] │ │ anchors :: Identifier │ │ i :: Identifier │ │ [inert] │ │ op :: Identifier │ │ [block] │ │ [=] │ │ firstref :: Identifier │ │ [call] │ │ + :: Identifier │ │ [.] │ │ [ref] │ │ anchors :: Identifier │ │ [call] │ │ - :: Identifier │ │ i :: Identifier │ │ 1 :: Value │ │ [inert] │ │ refpos :: Identifier │ │ 1 :: Value │ │ [break] │ │ [=] │ │ lastref :: Identifier │ │ 0 :: Value │ │ [for] │ │ [=] │ │ i :: Identifier │ │ [call] │ │ : :: Identifier │ │ [call] │ │ length :: Identifier │ │ anchors :: Identifier │ │ -1 :: Value │ │ 1 :: Value │ │ [block] │ │ [if] │ │ [call] │ │ ismatchop :: Identifier │ │ [.] │ │ [ref] │ │ anchors :: Identifier │ │ i :: Identifier │ │ [inert] │ │ op :: Identifier │ │ [block] │ │ [=] │ │ lastref :: Identifier │ │ [.] │ │ [ref] │ │ anchors :: Identifier │ │ i :: Identifier │ │ [inert] │ │ refpos :: Identifier │ │ [break] │ │ [return] │ │ [call] │ │ new :: Identifier │ │ anchors :: Identifier │ │ firstref :: Identifier │ │ lastref :: Identifier │ │ │ st1 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ [block] │ │ [=] │ │ val :: Identifier │ scope_layer=3 │ [struct] │ │ false :: Value │ macro_source=122 │ Alignment :: Identifier │ scope_layer=1 │ [block] │ │ [::] │ │ anchors :: Identifier │ scope_layer=1 │ [curly] │ │ Vector :: Identifier │ scope_layer=1 │ AlignmentAnchor :: Identifier │ scope_layer=1 │ [::] │ │ firstref :: Identifier │ scope_layer=1 │ Int :: Identifier │ scope_layer=1 │ [::] │ │ lastref :: Identifier │ scope_layer=1 │ Int :: Identifier │ scope_layer=1 │ [block] │ │ [block] │ │ [=] │ │ #1#val :: Identifier │ scope_layer=1 │ [function] │ │ [call] │ │ Alignment :: Identifier │ scope_layer=1 │ [::] │ │ anchors :: Identifier │ scope_layer=1 │ [curly] │ │ Vector :: Identifier │ scope_layer=1 │ AlignmentAnchor :: Identifier │ scope_layer=1 │ [kw] │ │ [::] │ │ check :: Identifier │ scope_layer=1 │ Bool :: Identifier │ scope_layer=1 │ true :: Value │ macro_source=122 │ [block] │ │ [if] │ │ check :: Identifier │ scope_layer=1 │ [block] │ │ [call] │ │ check_alignment_anchors :: Identifier │ scope_layer=1 │ anchors :: Identifier │ scope_layer=1 │ [=] │ │ firstref :: Identifier │ scope_layer=1 │ 0 :: Value │ macro_source=122 │ [for] │ │ [=] │ │ i :: Identifier │ scope_layer=1 │ [call] │ │ : :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=122 │ [call] │ │ length :: Identifier │ scope_layer=1 │ anchors :: Identifier │ scope_layer=1 │ [block] │ │ [if] │ │ [call] │ │ ismatchop :: Identifier │ scope_layer=1 │ [.] │ │ [ref] │ │ anchors :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [inert] │ │ op :: Identifier │ │ [block] │ │ [=] │ │ firstref :: Identifier │ scope_layer=1 │ [call] │ │ + :: Identifier │ scope_layer=1 │ [.] │ │ [ref] │ │ anchors :: Identifier │ scope_layer=1 │ [call] │ │ - :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=122 │ [inert] │ │ refpos :: Identifier │ │ 1 :: Value │ macro_source=122 │ [break] │ macro_source=122 │ [=] │ │ lastref :: Identifier │ scope_layer=1 │ 0 :: Value │ macro_source=122 │ [for] │ │ [=] │ │ i :: Identifier │ scope_layer=1 │ [call] │ │ : :: Identifier │ scope_layer=1 │ [call] │ │ length :: Identifier │ scope_layer=1 │ anchors :: Identifier │ scope_layer=1 │ -1 :: Value │ macro_source=122 │ 1 :: Value │ macro_source=122 │ [block] │ │ [if] │ │ [call] │ │ ismatchop :: Identifier │ scope_layer=1 │ [.] │ │ [ref] │ │ anchors :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [inert] │ │ op :: Identifier │ │ [block] │ │ [=] │ │ lastref :: Identifier │ scope_layer=1 │ [.] │ │ [ref] │ │ anchors :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [inert] │ │ refpos :: Identifier │ │ [break] │ macro_source=122 │ [return] │ │ [call] │ │ new :: Identifier │ scope_layer=1 │ anchors :: Identifier │ scope_layer=1 │ firstref :: Identifier │ scope_layer=1 │ lastref :: Identifier │ scope_layer=1 │ [call] │ │ Base.Docs.doc! :: Value │ macro_source=122 │ BioAlignments :: Value │ macro_source=122 │ [call] │ │ Base.Docs.Binding :: Value │ macro_source=122 │ BioAlignments :: Value │ macro_source=122 │ [inert] │ │ Alignment :: Identifier │ │ [call] │ macro_source=122 │ Base.Docs.docstr :: Value │ macro_source=122 │ [call] │ macro_source=122 │ Core.svec :: Value │ macro_source=122 │ " Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n" :: Value │ macro_source=122 │ [call] │ macro_source=122 │ Dict{Symbol, Any} :: Value │ macro_source=122 │ :path => "/home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl" :: Value │ macro_source=122 │ :linenumber => 20 :: Value │ macro_source=122 │ :module => BioAlignments :: Value │ macro_source=122 │ [curly] │ │ Union :: Identifier │ scope_layer=1 │ [curly] │ │ Tuple :: Identifier │ scope_layer=1 │ [curly] │ │ Vector :: Identifier │ scope_layer=1 │ AlignmentAnchor :: Identifier │ scope_layer=1 │ [curly] │ │ Tuple :: Identifier │ scope_layer=1 │ [curly] │ │ Vector :: Identifier │ scope_layer=1 │ AlignmentAnchor :: Identifier │ scope_layer=1 │ Bool :: Identifier │ scope_layer=1 │ #1#val :: Identifier │ scope_layer=1 │ [call] │ │ Base.Docs.doc! :: Value │ macro_source=122 │ BioAlignments :: Value │ macro_source=122 │ [call] │ │ Base.Docs.Binding :: Value │ macro_source=122 │ BioAlignments :: Value │ │ [inert] │ jl_source=L65 │ Alignment :: Identifier │ │ [call] │ │ Base.Docs.docstr :: Value │ macro_source=122 │ [call] │ macro_source=122 │ Core.svec :: Value │ macro_source=122 │ "Defines how to align a given sequence onto a reference sequence.\nThe alignment is represented as a sequence of elementary operations (match, insertion, deletion etc)\nanchored to specific positions of the input and reference sequence.\n" :: Value │ macro_source=122 │ [call] │ │ Dict{Symbol, Any} :: Value │ macro_source=122 │ :path => "/home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl" :: Value │ macro_source=122 │ :linenumber => 9 :: Value │ macro_source=122 │ :module => BioAlignments :: Value │ macro_source=122 │ [call] │ │ Pair :: Value │ macro_source=122 │ [inert] │ │ fields :: Identifier │ │ [call] │ macro_source=122 │ Dict{Symbol, Any} :: Value │ macro_source=122 │ [curly] │ │ Union :: Identifier │ scope_layer=1 │ val :: Identifier │ scope_layer=3 │ │ file = "/home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl" │ line = 9 └ mod = BioAlignments ERROR: LoadError: LoweringError: #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:25 =# - assignment syntax in structure fields is reserved Expression:  (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (iteration (in i (call : 1 (call length anchors)))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= firstref (call + (. (ref anchors (call - i 1)) :refpos) 1)) (break))))) (= lastref 0) (for (iteration (in i (call : (call length anchors) -1 1))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= lastref (. (ref anchors i) :refpos)) (break))))) (return (call new anchors firstref lastref))))) Containing expressions:  (block (:: anchors (curly Vector AlignmentAnchor)) (:: firstref Int) (:: lastref Int) (block (block (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (iteration (in i (call : 1 (call length anchors)))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= firstref (call + (. (ref anchors (call - i 1)) :refpos) 1)) (break))))) (= lastref 0) (for (iteration (in i (call : (call length anchors) -1 1))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= lastref (. (ref anchors i) :refpos)) (break))))) (return (call new anchors firstref lastref))))) (call Base.Docs.doc! BioAlignments (call Base.Docs.Binding BioAlignments :Alignment) (call Base.Docs.docstr (call Core.svec " Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n") (call Dict{Symbol, Any} :path => "/home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl" :linenumber => 20 :module => BioAlignments)) (curly Union (curly Tuple (curly Vector AlignmentAnchor)) (curly Tuple (curly Vector AlignmentAnchor) Bool))) #1#val)))  Detailed provenance:  (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (iteration (in i (call : 1 (call length anchors)))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= firstref (call + (. (ref anchors (call - i 1)) :refpos) 1)) (break))))) (= lastref 0) (for (iteration (in i (call : (call length anchors) -1 1))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= lastref (. (ref anchors i) :refpos)) (break))))) (return (call new anchors firstref lastref)))))  └─ (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (= i (call : 1 (call length anchors))) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= firstref (call + (. (ref anchors (call - i 1)) (inert refpos)) 1)) (break))))) (= lastref 0) (for (= i (call : (call length anchors) -1 1)) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= lastref (. (ref anchors i) (inert refpos))) (break))))) (return (call new anchors firstref lastref)))))  └─ (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (= i (call : 1 (call length anchors))) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= firstref (call + (. (ref anchors (call - i 1)) (inert refpos)) 1)) (break))))) (= lastref 0) (for (= i (call : (call length anchors) -1 1)) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= lastref (. (ref anchors i) (inert refpos))) (break))))) (return (call new anchors firstref lastref)))))  ├─ @ /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:25  └─ (macrocall @doc :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 =#) "Defines how to align a given sequence onto a reference sequence.\nThe alignment is represented as a sequence of elementary operations (match, insertion, deletion etc)\nanchored to specific positions of the input and reference sequence.\n" (struct false Alignment (block (:: anchors (curly Vector AlignmentAnchor)) (:: firstref Int) (:: lastref Int) (macrocall @doc :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =#) (-> " Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n" (block (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (= i (call : 1 (call length anchors))) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= firstref (call + (. (ref anchors (call - i 1)) (inert refpos)) 1)) (break))))) (= lastref 0) (for (= i (call : (call length anchors) -1 1)) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= lastref (. (ref anchors i) (inert refpos))) (break))))) (return (call new anchors firstref lastref))))))))))  └─ @ /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9  Stacktrace:  [1] _collect_struct_fields(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, field_names::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_types::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_attrs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_docs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, inner_defs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, exs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, SubArray{Int64, 1, Vector{Int64}, Tuple{UnitRange{Int64}}, true}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3184  ┌ [2] _collect_struct_fields(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, field_names::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_types::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_attrs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_docs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, inner_defs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, exs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, SubArray{Int64, 1, Vector{Int64}, Tuple{UnitRange{Int64}}, true}})  │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3181  ╰──── repeated 2 times  [4] expand_struct_def(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3754  [5] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4336  [6] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4152  [7] expand_assignment(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, is_const::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:1318  [8] expand_assignment(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:1268  [9] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4196  [10] expand_forms_2  @ /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4152 [inlined]  [11] #expand_forms_2##2  @ /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4440 [inlined]  [12] mapchildren(f::Base.JuliaLowering.var"#expand_forms_2##2#expand_forms_2##3"{Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}}, ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaSyntax /source/usr/share/julia/JuliaSyntax/src/porcelain/syntax_graph.jl:707  [13] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4440  [14] Dict{Int64, Int64}()  @ Base /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4152 [inlined]  [15] expand_forms_2(ctx::Base.JuliaLowering.MacroExpansionContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4469  [16] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:30  [17] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [18] top-level scope  @ ~/.julia/packages/BioAlignments/I6ecx/src/BioAlignments.jl:93  [19] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [20] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [21] top-level scope  @ stdin:5  [22] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [24] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [25] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [26] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 in expression starting at /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/BioAlignments.jl:3 in expression starting at stdin:5 ✗ BioAlignments ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("67c07d97-cdcb-5c2c-af73-a7f9c32a568b"), "Automa") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(imported::Bool, to::Module, from::Expr, paths::Expr)  @ Base ./module.jl:101  [11] eval_import(imported::Bool, to::Module, from::Expr, paths::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/FASTX/KGKFv/src/FASTX.jl:4  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/FASTX/KGKFv/src/FASTX.jl:1 in expression starting at stdin:5 ✗ FASTX ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("00701ae9-d1dc-5365-b64a-a3a3ebf5695e"), "BioAlignments") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base ./module.jl:111  [10] eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [11] top-level scope  @ ~/.julia/packages/XAM/gm2PK/src/sam/sam.jl:8  [12] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [13] top-level scope  @ ~/.julia/packages/XAM/gm2PK/src/XAM.jl:16  [14] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [16] top-level scope  @ stdin:5  [17] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [19] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [20] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [21] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/XAM/gm2PK/src/sam/sam.jl:4 in expression starting at /home/pkgeval/.julia/packages/XAM/gm2PK/src/XAM.jl:1 in expression starting at stdin:5 ✗ XAM ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("c2308a5c-f048-11e8-3e8a-31650f418d12"), "FASTX") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/FASTX/KGKFv/ext/BioSequencesExt.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/FASTX/KGKFv/ext/BioSequencesExt.jl:1 in expression starting at stdin:5 ✗ FASTX → BioSequencesExt ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("c2308a5c-f048-11e8-3e8a-31650f418d12"), "FASTX") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/BurrowsWheelerAligner/RB6Ad/src/BurrowsWheelerAligner.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/BurrowsWheelerAligner/RB6Ad/src/BurrowsWheelerAligner.jl:1 in expression starting at stdin:5 ✗ BurrowsWheelerAligner 19 dependencies successfully precompiled in 1856 seconds. 30 already precompiled. Precompilation completed after 1882.73s ################################################################################ # Testing # Testing BurrowsWheelerAligner Status `/tmp/jl_aAgpL6/Project.toml` [231d3afb] BurrowsWheelerAligner v0.1.4 [c2308a5c] FASTX v2.1.7 [d759349c] XAM v0.4.2 [f8ebc3b1] BWA_jll v0.7.17+1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_aAgpL6/Manifest.toml` [67c07d97] Automa v1.1.0 [28d598bf] BGZFStreams v0.3.2 [00701ae9] BioAlignments v3.1.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [231d3afb] BurrowsWheelerAligner v0.1.4 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.18.1 ⌅ [864edb3b] DataStructures v0.18.22 [c2308a5c] FASTX v2.1.7 ⌅ [899a7d2d] GenomicFeatures v2.1.0 ⌅ [4ffb77ac] Indexes v0.1.3 [524e6230] IntervalTrees v1.1.0 [692b3bcd] JLLWrappers v1.8.0 [bac558e1] OrderedCollections v1.8.1 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [fdea26ae] SIMD v3.7.2 [354b36f9] StringViews v1.3.7 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [7200193e] Twiddle v1.1.2 [d759349c] XAM v0.4.2 [f8ebc3b1] BWA_jll v0.7.17+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.1+0 [deac9b47] LibCURL_jll v8.20.0+1 [e37daf67] LibGit2_jll v1.9.3+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [4536629a] OpenBLAS_jll v0.3.33+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Info: JuliaLowering threw given input: │ code = │ :(#= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =# @generated function fneg(x::T, ::F = nothing) where {T <: LT{<:FloatingTypes}, F <: FPFlags} │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =# │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:187 =# │ fpflags = fp_str(F) │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:188 =# │ s = "%2 = fneg $(fpflags) $(llvm_type(T)) %0\nret $(llvm_type(T)) %2\n" │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:192 =# │ return $(Expr(:quote, quote │ $(Expr(:$, :(Expr(:meta, :inline)))) │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:194 =# │ Base.llvmcall($(Expr(:$, :s)), T, Tuple{T}, x) │ end)) │ end) │ st0 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ [macrocall] │ │ @generated :: Identifier │ │ :(#= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =#) :: Value │ │ [function] │ │ [where] │ │ [call] │ │ fneg :: Identifier │ │ [::] │ │ x :: Identifier │ │ T :: Identifier │ │ [kw] │ │ [::] │ │ F :: Identifier │ │ nothing :: Identifier │ │ [<:] │ │ T :: Identifier │ │ [curly] │ │ LT :: Identifier │ │ [<:] │ │ FloatingTypes :: Identifier │ │ [<:] │ │ F :: Identifier │ │ FPFlags :: Identifier │ │ [block] │ │ [=] │ │ fpflags :: Identifier │ │ [call] │ │ fp_str :: Identifier │ │ F :: Identifier │ │ [=] │ │ s :: Identifier │ │ [string] │ │ "%2 = fneg " :: Value │ │ fpflags :: Identifier │ │ " " :: Value │ │ [call] │ │ llvm_type :: Identifier │ │ T :: Identifier │ │ " %0\nret " :: Value │ │ [call] │ │ llvm_type :: Identifier │ │ T :: Identifier │ │ " %2\n" :: Value │ │ [return] │ │ [quote] │ │ [block] │ │ [$] │ │ [call] │ │ Expr :: Identifier │ │ [inert] │ │ meta :: Identifier │ │ [inert] │ │ inline :: Identifier │ │ [call] │ │ [.] │ │ Base :: Identifier │ │ [inert] │ │ llvmcall :: Identifier │ │ [$] │ │ s :: Identifier │ │ T :: Identifier │ │ [curly] │ │ Tuple :: Identifier │ │ T :: Identifier │ │ x :: Identifier │ │ │ st1 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ [function] │ jl_source=L67 │ [where] │ scope_layer=1 │ [call] │ macro_source=65,scope_layer=1 │ fneg :: Identifier │ macro_source=65,scope_layer=1 │ [::] │ macro_source=65,scope_layer=1 │ x :: Identifier │ macro_source=65,scope_layer=1 │ T :: Identifier │ macro_source=65,scope_layer=1 │ [kw] │ macro_source=65,scope_layer=1 │ [::] │ macro_source=65,scope_layer=1 │ F :: Identifier │ macro_source=65,scope_layer=1 │ nothing :: Identifier │ macro_source=65,scope_layer=1 │ [<:] │ scope_layer=1 │ T :: Identifier │ macro_source=65,scope_layer=1 │ [curly] │ scope_layer=1 │ LT :: Identifier │ macro_source=65,scope_layer=1 │ [<:] │ scope_layer=1 │ FloatingTypes :: Identifier │ macro_source=65,scope_layer=1 │ [<:] │ scope_layer=1 │ F :: Identifier │ macro_source=65,scope_layer=1 │ FPFlags :: Identifier │ macro_source=65,scope_layer=1 │ [block] │ jl_source=L67 │ [if] │ jl_source=L67 │ [generated] │ macro_source=65,jl_source=L67 │ [block] │ scope_layer=1 │ [=] │ macro_source=65,scope_layer=1 │ fpflags :: Identifier │ macro_source=65,scope_layer=1 │ [call] │ macro_source=65,scope_layer=1 │ fp_str :: Identifier │ macro_source=65,scope_layer=1 │ F :: Identifier │ macro_source=65,scope_layer=1 │ [=] │ macro_source=65,scope_layer=1 │ s :: Identifier │ macro_source=65,scope_layer=1 │ [string] │ macro_source=65,scope_layer=1 │ "%2 = fneg " :: Value │ macro_source=65,scope_layer=1 │ fpflags :: Identifier │ macro_source=65,scope_layer=1 │ " " :: Value │ macro_source=65,scope_layer=1 │ [call] │ macro_source=65,scope_layer=1 │ llvm_type :: Identifier │ macro_source=65,scope_layer=1 │ T :: Identifier │ macro_source=65,scope_layer=1 │ " %0\nret " :: Value │ macro_source=65,scope_layer=1 │ [call] │ macro_source=65,scope_layer=1 │ llvm_type :: Identifier │ macro_source=65,scope_layer=1 │ T :: Identifier │ macro_source=65,scope_layer=1 │ " %2\n" :: Value │ macro_source=65,scope_layer=1 │ [return] │ scope_layer=1 │ [call] │ jl_source=L67 │ Base.JuliaLowering.interpolate_ast :: Value │ jl_source=L67 │ Expr :: Value │ jl_source=L67 │ [inert] │ jl_source=L67 │ [block] │ │ [$] │ │ [call] │ │ Expr :: Identifier │ │ [inert] │ │ meta :: Identifier │ │ [inert] │ │ inline :: Identifier │ │ [call] │ │ [.] │ │ Base :: Identifier │ │ [inert] │ │ llvmcall :: Identifier │ │ [$] │ │ s :: Identifier │ │ T :: Identifier │ │ [curly] │ │ Tuple :: Identifier │ │ T :: Identifier │ │ x :: Identifier │ │ [tuple] │ jl_source=L31 │ [call] │ scope_layer=1 │ Expr :: Identifier │ macro_source=65,scope_layer=1 │ [inert] │ │ meta :: Identifier │ │ [inert] │ │ inline :: Identifier │ │ [tuple] │ jl_source=L31 │ s :: Identifier │ macro_source=65,scope_layer=1 │ [block] │ jl_source=L67 │ [meta] │ jl_source=L67 │ generated_only :: Identifier │ scope_layer=2,jl_source=L67 │ [return] │ macro_source=65,jl_source=L67 │ nothing :: Value │ macro_source=65,jl_source=L67 │ │ file = "/home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl" │ line = 186 └ mod = SIMD.Intrinsics ERROR: LoadError: internal lowering bug: #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =# - `jl_assert(!(haskey(ssa_rewrites, lhs_id)), _)`: multiple assignments to ssavalue Expression:  (= #₁ (call core.TypeVar :#T1 #₆₅/FloatingTypes)) Containing expressions:  (= #₁ (call core.TypeVar :#T1 #₆₅/FloatingTypes))  Detailed provenance:  (= #₁ (call core.TypeVar :#T1 #₆₅/FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:366 =#  └─ (= #₁ (call core.TypeVar :#T1 #₉/FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/closure_conversion.jl:197 =#  └─ (= #₁ (call core.TypeVar :#T1 #₉/FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =#  └─ (= #₁ (call core.TypeVar :#T1 FloatingTypes))  └─ (call core.TypeVar :#T1 FloatingTypes) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3025 =#  └─ (<: FloatingTypes)  └─ (<: FloatingTypes)  └─ (<: FloatingTypes)  ├─ (<: FloatingTypes)  │ └─ @ /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186  └─ (macrocall @generated :(#= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =#) (function (where (call fneg (:: x T) (kw (:: F) nothing)) (<: T (curly LT (<: FloatingTypes))) (<: F FPFlags)) (block (= fpflags (call fp_str F)) (= s (string "%2 = fneg " fpflags " " (call llvm_type T) " %0\nret " (call llvm_type T) " %2\n")) (return (quote (block ($ (call Expr (inert meta) (inert inline))) (call (. Base (inert llvmcall)) ($ s) T (curly Tuple T) x)))))))  └─ @ /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186  Stacktrace:  [1] iterate(A::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}})  @ Base /source/usr/share/julia/JuliaLowering/src/ast.jl:23 [inlined]  [2] renumber_body(ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, input_code::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, slot_rewrites::Dict{Int64, Int64})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1106  [3] compile_lambda(outer_ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1223  [4] linearize_ir(ctx::Base.JuliaLowering.ClosureConversionCtx{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1253  [5] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:33  [6] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [7] top-level scope  @ ~/.julia/packages/SIMD/UiGbs/src/SIMD.jl:23  [8] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [10] top-level scope  @ stdin:5  [11] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [13] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [14] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [15] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:2 in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/SIMD.jl:1 in expression starting at stdin:5 ┌ Info: JuliaLowering threw given input: │ code = │ :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 =# Core.@doc "Defines how to align a given sequence onto a reference sequence.\nThe alignment is represented as a sequence of elementary operations (match, insertion, deletion etc)\nanchored to specific positions of the input and reference sequence.\n" struct Alignment │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:15 =# │ anchors::Vector{AlignmentAnchor} │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:16 =# │ firstref::Int │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:17 =# │ lastref::Int │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =# │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =# @doc (" Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n"->begin │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =# │ function Alignment(anchors::Vector{AlignmentAnchor}, check::Bool = true) │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:25 =# │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:27 =# │ if check │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:28 =# │ check_alignment_anchors(anchors) │ end │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:32 =# │ firstref = 0 │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:33 =# │ for i = 1:length(anchors) │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:34 =# │ if ismatchop((anchors[i]).op) │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:35 =# │ firstref = (anchors[i - 1]).refpos + 1 │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:36 =# │ break │ end │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:38 =# │ end │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:40 =# │ lastref = 0 │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:41 =# │ for i = length(anchors):-1:1 │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:42 =# │ if ismatchop((anchors[i]).op) │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:43 =# │ lastref = (anchors[i]).refpos │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:44 =# │ break │ end │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:46 =# │ end │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:48 =# │ return new(anchors, firstref, lastref) │ end │ end) │ end) │ st0 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ [macrocall] │ │ @doc :: Identifier │ mod │ :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 =#) :: Value │ │ "Defines how to align a given sequence onto a reference sequence.\nThe alignment is represented as a sequence of elementary operations (match, insertion, deletion etc)\nanchored to specific positions of the input and reference sequence.\n" :: Value │ │ [struct] │ │ false :: Value │ │ Alignment :: Identifier │ │ [block] │ │ [::] │ │ anchors :: Identifier │ │ [curly] │ │ Vector :: Identifier │ │ AlignmentAnchor :: Identifier │ │ [::] │ │ firstref :: Identifier │ │ Int :: Identifier │ │ [::] │ │ lastref :: Identifier │ │ Int :: Identifier │ │ [macrocall] │ │ @doc :: Identifier │ │ :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =#) :: Value │ │ [->] │ │ " Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n" :: Value │ │ [block] │ │ [function] │ │ [call] │ │ Alignment :: Identifier │ │ [::] │ │ anchors :: Identifier │ │ [curly] │ │ Vector :: Identifier │ │ AlignmentAnchor :: Identifier │ │ [kw] │ │ [::] │ │ check :: Identifier │ │ Bool :: Identifier │ │ true :: Value │ │ [block] │ │ [if] │ │ check :: Identifier │ │ [block] │ │ [call] │ │ check_alignment_anchors :: Identifier │ │ anchors :: Identifier │ │ [=] │ │ firstref :: Identifier │ │ 0 :: Value │ │ [for] │ │ [=] │ │ i :: Identifier │ │ [call] │ │ : :: Identifier │ │ 1 :: Value │ │ [call] │ │ length :: Identifier │ │ anchors :: Identifier │ │ [block] │ │ [if] │ │ [call] │ │ ismatchop :: Identifier │ │ [.] │ │ [ref] │ │ anchors :: Identifier │ │ i :: Identifier │ │ [inert] │ │ op :: Identifier │ │ [block] │ │ [=] │ │ firstref :: Identifier │ │ [call] │ │ + :: Identifier │ │ [.] │ │ [ref] │ │ anchors :: Identifier │ │ [call] │ │ - :: Identifier │ │ i :: Identifier │ │ 1 :: Value │ │ [inert] │ │ refpos :: Identifier │ │ 1 :: Value │ │ [break] │ │ [=] │ │ lastref :: Identifier │ │ 0 :: Value │ │ [for] │ │ [=] │ │ i :: Identifier │ │ [call] │ │ : :: Identifier │ │ [call] │ │ length :: Identifier │ │ anchors :: Identifier │ │ -1 :: Value │ │ 1 :: Value │ │ [block] │ │ [if] │ │ [call] │ │ ismatchop :: Identifier │ │ [.] │ │ [ref] │ │ anchors :: Identifier │ │ i :: Identifier │ │ [inert] │ │ op :: Identifier │ │ [block] │ │ [=] │ │ lastref :: Identifier │ │ [.] │ │ [ref] │ │ anchors :: Identifier │ │ i :: Identifier │ │ [inert] │ │ refpos :: Identifier │ │ [break] │ │ [return] │ │ [call] │ │ new :: Identifier │ │ anchors :: Identifier │ │ firstref :: Identifier │ │ lastref :: Identifier │ │ │ st1 = │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ [block] │ │ [=] │ │ val :: Identifier │ scope_layer=3 │ [struct] │ │ false :: Value │ macro_source=122 │ Alignment :: Identifier │ scope_layer=1 │ [block] │ │ [::] │ │ anchors :: Identifier │ scope_layer=1 │ [curly] │ │ Vector :: Identifier │ scope_layer=1 │ AlignmentAnchor :: Identifier │ scope_layer=1 │ [::] │ │ firstref :: Identifier │ scope_layer=1 │ Int :: Identifier │ scope_layer=1 │ [::] │ │ lastref :: Identifier │ scope_layer=1 │ Int :: Identifier │ scope_layer=1 │ [block] │ │ [block] │ │ [=] │ │ #1#val :: Identifier │ scope_layer=1 │ [function] │ │ [call] │ │ Alignment :: Identifier │ scope_layer=1 │ [::] │ │ anchors :: Identifier │ scope_layer=1 │ [curly] │ │ Vector :: Identifier │ scope_layer=1 │ AlignmentAnchor :: Identifier │ scope_layer=1 │ [kw] │ │ [::] │ │ check :: Identifier │ scope_layer=1 │ Bool :: Identifier │ scope_layer=1 │ true :: Value │ macro_source=122 │ [block] │ │ [if] │ │ check :: Identifier │ scope_layer=1 │ [block] │ │ [call] │ │ check_alignment_anchors :: Identifier │ scope_layer=1 │ anchors :: Identifier │ scope_layer=1 │ [=] │ │ firstref :: Identifier │ scope_layer=1 │ 0 :: Value │ macro_source=122 │ [for] │ │ [=] │ │ i :: Identifier │ scope_layer=1 │ [call] │ │ : :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=122 │ [call] │ │ length :: Identifier │ scope_layer=1 │ anchors :: Identifier │ scope_layer=1 │ [block] │ │ [if] │ │ [call] │ │ ismatchop :: Identifier │ scope_layer=1 │ [.] │ │ [ref] │ │ anchors :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [inert] │ │ op :: Identifier │ │ [block] │ │ [=] │ │ firstref :: Identifier │ scope_layer=1 │ [call] │ │ + :: Identifier │ scope_layer=1 │ [.] │ │ [ref] │ │ anchors :: Identifier │ scope_layer=1 │ [call] │ │ - :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ 1 :: Value │ macro_source=122 │ [inert] │ │ refpos :: Identifier │ │ 1 :: Value │ macro_source=122 │ [break] │ macro_source=122 │ [=] │ │ lastref :: Identifier │ scope_layer=1 │ 0 :: Value │ macro_source=122 │ [for] │ │ [=] │ │ i :: Identifier │ scope_layer=1 │ [call] │ │ : :: Identifier │ scope_layer=1 │ [call] │ │ length :: Identifier │ scope_layer=1 │ anchors :: Identifier │ scope_layer=1 │ -1 :: Value │ macro_source=122 │ 1 :: Value │ macro_source=122 │ [block] │ │ [if] │ │ [call] │ │ ismatchop :: Identifier │ scope_layer=1 │ [.] │ │ [ref] │ │ anchors :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [inert] │ │ op :: Identifier │ │ [block] │ │ [=] │ │ lastref :: Identifier │ scope_layer=1 │ [.] │ │ [ref] │ │ anchors :: Identifier │ scope_layer=1 │ i :: Identifier │ scope_layer=1 │ [inert] │ │ refpos :: Identifier │ │ [break] │ macro_source=122 │ [return] │ │ [call] │ │ new :: Identifier │ scope_layer=1 │ anchors :: Identifier │ scope_layer=1 │ firstref :: Identifier │ scope_layer=1 │ lastref :: Identifier │ scope_layer=1 │ [call] │ │ Base.Docs.doc! :: Value │ macro_source=122 │ BioAlignments :: Value │ macro_source=122 │ [call] │ │ Base.Docs.Binding :: Value │ macro_source=122 │ BioAlignments :: Value │ macro_source=122 │ [inert] │ │ Alignment :: Identifier │ │ [call] │ macro_source=122 │ Base.Docs.docstr :: Value │ macro_source=122 │ [call] │ macro_source=122 │ Core.svec :: Value │ macro_source=122 │ " Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n" :: Value │ macro_source=122 │ [call] │ macro_source=122 │ Dict{Symbol, Any} :: Value │ macro_source=122 │ :path => "/home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl" :: Value │ macro_source=122 │ :linenumber => 20 :: Value │ macro_source=122 │ :module => BioAlignments :: Value │ macro_source=122 │ [curly] │ │ Union :: Identifier │ scope_layer=1 │ [curly] │ │ Tuple :: Identifier │ scope_layer=1 │ [curly] │ │ Vector :: Identifier │ scope_layer=1 │ AlignmentAnchor :: Identifier │ scope_layer=1 │ [curly] │ │ Tuple :: Identifier │ scope_layer=1 │ [curly] │ │ Vector :: Identifier │ scope_layer=1 │ AlignmentAnchor :: Identifier │ scope_layer=1 │ Bool :: Identifier │ scope_layer=1 │ #1#val :: Identifier │ scope_layer=1 │ [call] │ │ Base.Docs.doc! :: Value │ macro_source=122 │ BioAlignments :: Value │ macro_source=122 │ [call] │ │ Base.Docs.Binding :: Value │ macro_source=122 │ BioAlignments :: Value │ │ [inert] │ jl_source=L65 │ Alignment :: Identifier │ │ [call] │ │ Base.Docs.docstr :: Value │ macro_source=122 │ [call] │ macro_source=122 │ Core.svec :: Value │ macro_source=122 │ "Defines how to align a given sequence onto a reference sequence.\nThe alignment is represented as a sequence of elementary operations (match, insertion, deletion etc)\nanchored to specific positions of the input and reference sequence.\n" :: Value │ macro_source=122 │ [call] │ │ Dict{Symbol, Any} :: Value │ macro_source=122 │ :path => "/home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl" :: Value │ macro_source=122 │ :linenumber => 9 :: Value │ macro_source=122 │ :module => BioAlignments :: Value │ macro_source=122 │ [call] │ │ Pair :: Value │ macro_source=122 │ [inert] │ │ fields :: Identifier │ │ [call] │ macro_source=122 │ Dict{Symbol, Any} :: Value │ macro_source=122 │ [curly] │ │ Union :: Identifier │ scope_layer=1 │ val :: Identifier │ scope_layer=3 │ │ file = "/home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl" │ line = 9 └ mod = BioAlignments ERROR: LoadError: LoweringError: #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:25 =# - assignment syntax in structure fields is reserved Expression:  (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (iteration (in i (call : 1 (call length anchors)))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= firstref (call + (. (ref anchors (call - i 1)) :refpos) 1)) (break))))) (= lastref 0) (for (iteration (in i (call : (call length anchors) -1 1))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= lastref (. (ref anchors i) :refpos)) (break))))) (return (call new anchors firstref lastref))))) Containing expressions:  (block (:: anchors (curly Vector AlignmentAnchor)) (:: firstref Int) (:: lastref Int) (block (block (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (iteration (in i (call : 1 (call length anchors)))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= firstref (call + (. (ref anchors (call - i 1)) :refpos) 1)) (break))))) (= lastref 0) (for (iteration (in i (call : (call length anchors) -1 1))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= lastref (. (ref anchors i) :refpos)) (break))))) (return (call new anchors firstref lastref))))) (call Base.Docs.doc! BioAlignments (call Base.Docs.Binding BioAlignments :Alignment) (call Base.Docs.docstr (call Core.svec " Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n") (call Dict{Symbol, Any} :path => "/home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl" :linenumber => 20 :module => BioAlignments)) (curly Union (curly Tuple (curly Vector AlignmentAnchor)) (curly Tuple (curly Vector AlignmentAnchor) Bool))) #1#val)))  Detailed provenance:  (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (iteration (in i (call : 1 (call length anchors)))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= firstref (call + (. (ref anchors (call - i 1)) :refpos) 1)) (break))))) (= lastref 0) (for (iteration (in i (call : (call length anchors) -1 1))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= lastref (. (ref anchors i) :refpos)) (break))))) (return (call new anchors firstref lastref)))))  └─ (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (= i (call : 1 (call length anchors))) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= firstref (call + (. (ref anchors (call - i 1)) (inert refpos)) 1)) (break))))) (= lastref 0) (for (= i (call : (call length anchors) -1 1)) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= lastref (. (ref anchors i) (inert refpos))) (break))))) (return (call new anchors firstref lastref)))))  └─ (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (= i (call : 1 (call length anchors))) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= firstref (call + (. (ref anchors (call - i 1)) (inert refpos)) 1)) (break))))) (= lastref 0) (for (= i (call : (call length anchors) -1 1)) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= lastref (. (ref anchors i) (inert refpos))) (break))))) (return (call new anchors firstref lastref)))))  ├─ @ /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:25  └─ (macrocall @doc :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 =#) "Defines how to align a given sequence onto a reference sequence.\nThe alignment is represented as a sequence of elementary operations (match, insertion, deletion etc)\nanchored to specific positions of the input and reference sequence.\n" (struct false Alignment (block (:: anchors (curly Vector AlignmentAnchor)) (:: firstref Int) (:: lastref Int) (macrocall @doc :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =#) (-> " Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n" (block (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (= i (call : 1 (call length anchors))) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= firstref (call + (. (ref anchors (call - i 1)) (inert refpos)) 1)) (break))))) (= lastref 0) (for (= i (call : (call length anchors) -1 1)) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= lastref (. (ref anchors i) (inert refpos))) (break))))) (return (call new anchors firstref lastref))))))))))  └─ @ /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9  Stacktrace:  [1] _collect_struct_fields(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, field_names::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_types::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_attrs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_docs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, inner_defs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, exs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, SubArray{Int64, 1, Vector{Int64}, Tuple{UnitRange{Int64}}, true}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3184  ┌ [2] _collect_struct_fields(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, field_names::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_types::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_attrs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_docs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, inner_defs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, exs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, SubArray{Int64, 1, Vector{Int64}, Tuple{UnitRange{Int64}}, true}})  │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3181  ╰──── repeated 2 times  [4] expand_struct_def(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3754  [5] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4336  [6] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4152  [7] expand_assignment(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, is_const::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:1318  [8] expand_assignment(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:1268  [9] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4196  [10] expand_forms_2  @ /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4152 [inlined]  [11] #expand_forms_2##2  @ /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4440 [inlined]  [12] mapchildren(f::Base.JuliaLowering.var"#expand_forms_2##2#expand_forms_2##3"{Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}}, ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaSyntax /source/usr/share/julia/JuliaSyntax/src/porcelain/syntax_graph.jl:707  [13] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4440  [14] Dict{Int64, Int64}()  @ Base /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4152 [inlined]  [15] expand_forms_2(ctx::Base.JuliaLowering.MacroExpansionContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4469  [16] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:30  [17] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [18] top-level scope  @ ~/.julia/packages/BioAlignments/I6ecx/src/BioAlignments.jl:93  [19] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [20] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [21] top-level scope  @ stdin:5  [22] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [24] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [25] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [26] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 in expression starting at /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/BioAlignments.jl:3 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("fdea26ae-647d-5447-a871-4b548cad5224"), "SIMD") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/Automa/EyNRt/src/Automa.jl:4  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/Automa/EyNRt/src/Automa.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("67c07d97-cdcb-5c2c-af73-a7f9c32a568b"), "Automa") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(imported::Bool, to::Module, from::Expr, paths::Expr)  @ Base ./module.jl:101  [11] eval_import(imported::Bool, to::Module, from::Expr, paths::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/FASTX/KGKFv/src/FASTX.jl:4  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/FASTX/KGKFv/src/FASTX.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("00701ae9-d1dc-5365-b64a-a3a3ebf5695e"), "BioAlignments") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base ./module.jl:111  [10] eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [11] top-level scope  @ ~/.julia/packages/XAM/gm2PK/src/sam/sam.jl:8  [12] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:327  [13] top-level scope  @ ~/.julia/packages/XAM/gm2PK/src/XAM.jl:16  [14] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [16] top-level scope  @ stdin:5  [17] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [19] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [20] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [21] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/XAM/gm2PK/src/sam/sam.jl:4 in expression starting at /home/pkgeval/.julia/packages/XAM/gm2PK/src/XAM.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("c2308a5c-f048-11e8-3e8a-31650f418d12"), "FASTX") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195  [12] top-level scope  @ ~/.julia/packages/FASTX/KGKFv/ext/BioSequencesExt.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/FASTX/KGKFv/ext/BioSequencesExt.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("c2308a5c-f048-11e8-3e8a-31650f418d12"), "FASTX") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2818  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2672  [4] macro expansion  @ ./loading.jl:2599 [inlined]  [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String)  @ Base ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2563  [7] require  @ ./loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base ./module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:207  [12] top-level scope  @ ~/.julia/packages/BurrowsWheelerAligner/RB6Ad/src/BurrowsWheelerAligner.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:326  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3271  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:517  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3113  [18] push!(a::Vector{SubString{String}}, item::String)  @ Base ./loading.jl:3123 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:353  [20] _start()  @ Base ./client.jl:596 in expression starting at /home/pkgeval/.julia/packages/BurrowsWheelerAligner/RB6Ad/src/BurrowsWheelerAligner.jl:1 in expression starting at stdin:5 7 dependencies had output during precompilation: ┌ FASTX │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("67c07d97-cdcb-5c2c-af73-a7f9c32a568b"), "Automa") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2818 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2672 │ [4] macro expansion │ @ ./loading.jl:2599 [inlined] │ [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String) │ @ Base ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2563 │ [7] require │ @ ./loading.jl:2539 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base ./module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [10] _eval_import(imported::Bool, to::Module, from::Expr, paths::Expr) │ @ Base ./module.jl:101 │ [11] eval_import(imported::Bool, to::Module, from::Expr, paths::Expr) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195 │ [12] top-level scope │ @ ~/.julia/packages/FASTX/KGKFv/src/FASTX.jl:4 │ [13] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [15] top-level scope │ @ stdin:5 │ [16] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [18] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [19] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [20] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/FASTX/KGKFv/src/FASTX.jl:1 │ in expression starting at stdin:5 └ ┌ Automa │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("fdea26ae-647d-5447-a871-4b548cad5224"), "SIMD") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2818 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2672 │ [4] macro expansion │ @ ./loading.jl:2599 [inlined] │ [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String) │ @ Base ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2563 │ [7] require │ @ ./loading.jl:2539 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base ./module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 │ [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195 │ [12] top-level scope │ @ ~/.julia/packages/Automa/EyNRt/src/Automa.jl:4 │ [13] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [15] top-level scope │ @ stdin:5 │ [16] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [18] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [19] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [20] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/Automa/EyNRt/src/Automa.jl:1 │ in expression starting at stdin:5 └ ┌ BioAlignments │ ┌ Info: JuliaLowering threw given input: │ │ code = │ │ :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 =# Core.@doc "Defines how to align a given sequence onto a reference sequence.\nThe alignment is represented as a sequence of elementary operations (match, insertion, deletion etc)\nanchored to specific positions of the input and reference sequence.\n" struct Alignment │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:15 =# │ │ anchors::Vector{AlignmentAnchor} │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:16 =# │ │ firstref::Int │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:17 =# │ │ lastref::Int │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =# │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =# @doc (" Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n"->begin │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =# │ │ function Alignment(anchors::Vector{AlignmentAnchor}, check::Bool = true) │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:25 =# │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:27 =# │ │ if check │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:28 =# │ │ check_alignment_anchors(anchors) │ │ end │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:32 =# │ │ firstref = 0 │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:33 =# │ │ for i = 1:length(anchors) │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:34 =# │ │ if ismatchop((anchors[i]).op) │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:35 =# │ │ firstref = (anchors[i - 1]).refpos + 1 │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:36 =# │ │ break │ │ end │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:38 =# │ │ end │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:40 =# │ │ lastref = 0 │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:41 =# │ │ for i = length(anchors):-1:1 │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:42 =# │ │ if ismatchop((anchors[i]).op) │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:43 =# │ │ lastref = (anchors[i]).refpos │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:44 =# │ │ break │ │ end │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:46 =# │ │ end │ │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:48 =# │ │ return new(anchors, firstref, lastref) │ │ end │ │ end) │ │ end) │ │ st0 = │ │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ │ [macrocall] │ │ │ @doc :: Identifier │ mod │ │ :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 =#) :: Value │ │ │ "Defines how to align a given sequence onto a reference sequence.\nThe alignment is represented as a sequence of elementary operations (match, insertion, deletion etc)\nanchored to specific positions of the input and reference sequence.\n" :: Value │ │ │ [struct] │ │ │ false :: Value │ │ │ Alignment :: Identifier │ │ │ [block] │ │ │ [::] │ │ │ anchors :: Identifier │ │ │ [curly] │ │ │ Vector :: Identifier │ │ │ AlignmentAnchor :: Identifier │ │ │ [::] │ │ │ firstref :: Identifier │ │ │ Int :: Identifier │ │ │ [::] │ │ │ lastref :: Identifier │ │ │ Int :: Identifier │ │ │ [macrocall] │ │ │ @doc :: Identifier │ │ │ :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =#) :: Value │ │ │ [->] │ │ │ " Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n" :: Value │ │ │ [block] │ │ │ [function] │ │ │ [call] │ │ │ Alignment :: Identifier │ │ │ [::] │ │ │ anchors :: Identifier │ │ │ [curly] │ │ │ Vector :: Identifier │ │ │ AlignmentAnchor :: Identifier │ │ │ [kw] │ │ │ [::] │ │ │ check :: Identifier │ │ │ Bool :: Identifier │ │ │ true :: Value │ │ │ [block] │ │ │ [if] │ │ │ check :: Identifier │ │ │ [block] │ │ │ [call] │ │ │ check_alignment_anchors :: Identifier │ │ │ anchors :: Identifier │ │ │ [=] │ │ │ firstref :: Identifier │ │ │ 0 :: Value │ │ │ [for] │ │ │ [=] │ │ │ i :: Identifier │ │ │ [call] │ │ │ : :: Identifier │ │ │ 1 :: Value │ │ │ [call] │ │ │ length :: Identifier │ │ │ anchors :: Identifier │ │ │ [block] │ │ │ [if] │ │ │ [call] │ │ │ ismatchop :: Identifier │ │ │ [.] │ │ │ [ref] │ │ │ anchors :: Identifier │ │ │ i :: Identifier │ │ │ [inert] │ │ │ op :: Identifier │ │ │ [block] │ │ │ [=] │ │ │ firstref :: Identifier │ │ │ [call] │ │ │ + :: Identifier │ │ │ [.] │ │ │ [ref] │ │ │ anchors :: Identifier │ │ │ [call] │ │ │ - :: Identifier │ │ │ i :: Identifier │ │ │ 1 :: Value │ │ │ [inert] │ │ │ refpos :: Identifier │ │ │ 1 :: Value │ │ │ [break] │ │ │ [=] │ │ │ lastref :: Identifier │ │ │ 0 :: Value │ │ │ [for] │ │ │ [=] │ │ │ i :: Identifier │ │ │ [call] │ │ │ : :: Identifier │ │ │ [call] │ │ │ length :: Identifier │ │ │ anchors :: Identifier │ │ │ -1 :: Value │ │ │ 1 :: Value │ │ │ [block] │ │ │ [if] │ │ │ [call] │ │ │ ismatchop :: Identifier │ │ │ [.] │ │ │ [ref] │ │ │ anchors :: Identifier │ │ │ i :: Identifier │ │ │ [inert] │ │ │ op :: Identifier │ │ │ [block] │ │ │ [=] │ │ │ lastref :: Identifier │ │ │ [.] │ │ │ [ref] │ │ │ anchors :: Identifier │ │ │ i :: Identifier │ │ │ [inert] │ │ │ refpos :: Identifier │ │ │ [break] │ │ │ [return] │ │ │ [call] │ │ │ new :: Identifier │ │ │ anchors :: Identifier │ │ │ firstref :: Identifier │ │ │ lastref :: Identifier │ │ │ │ │ st1 = │ │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ │ [block] │ │ │ [=] │ │ │ val :: Identifier │ scope_layer=3 │ │ [struct] │ │ │ false :: Value │ macro_source=122 │ │ Alignment :: Identifier │ scope_layer=1 │ │ [block] │ │ │ [::] │ │ │ anchors :: Identifier │ scope_layer=1 │ │ [curly] │ │ │ Vector :: Identifier │ scope_layer=1 │ │ AlignmentAnchor :: Identifier │ scope_layer=1 │ │ [::] │ │ │ firstref :: Identifier │ scope_layer=1 │ │ Int :: Identifier │ scope_layer=1 │ │ [::] │ │ │ lastref :: Identifier │ scope_layer=1 │ │ Int :: Identifier │ scope_layer=1 │ │ [block] │ │ │ [block] │ │ │ [=] │ │ │ #1#val :: Identifier │ scope_layer=1 │ │ [function] │ │ │ [call] │ │ │ Alignment :: Identifier │ scope_layer=1 │ │ [::] │ │ │ anchors :: Identifier │ scope_layer=1 │ │ [curly] │ │ │ Vector :: Identifier │ scope_layer=1 │ │ AlignmentAnchor :: Identifier │ scope_layer=1 │ │ [kw] │ │ │ [::] │ │ │ check :: Identifier │ scope_layer=1 │ │ Bool :: Identifier │ scope_layer=1 │ │ true :: Value │ macro_source=122 │ │ [block] │ │ │ [if] │ │ │ check :: Identifier │ scope_layer=1 │ │ [block] │ │ │ [call] │ │ │ check_alignment_anchors :: Identifier │ scope_layer=1 │ │ anchors :: Identifier │ scope_layer=1 │ │ [=] │ │ │ firstref :: Identifier │ scope_layer=1 │ │ 0 :: Value │ macro_source=122 │ │ [for] │ │ │ [=] │ │ │ i :: Identifier │ scope_layer=1 │ │ [call] │ │ │ : :: Identifier │ scope_layer=1 │ │ 1 :: Value │ macro_source=122 │ │ [call] │ │ │ length :: Identifier │ scope_layer=1 │ │ anchors :: Identifier │ scope_layer=1 │ │ [block] │ │ │ [if] │ │ │ [call] │ │ │ ismatchop :: Identifier │ scope_layer=1 │ │ [.] │ │ │ [ref] │ │ │ anchors :: Identifier │ scope_layer=1 │ │ i :: Identifier │ scope_layer=1 │ │ [inert] │ │ │ op :: Identifier │ │ │ [block] │ │ │ [=] │ │ │ firstref :: Identifier │ scope_layer=1 │ │ [call] │ │ │ + :: Identifier │ scope_layer=1 │ │ [.] │ │ │ [ref] │ │ │ anchors :: Identifier │ scope_layer=1 │ │ [call] │ │ │ - :: Identifier │ scope_layer=1 │ │ i :: Identifier │ scope_layer=1 │ │ 1 :: Value │ macro_source=122 │ │ [inert] │ │ │ refpos :: Identifier │ │ │ 1 :: Value │ macro_source=122 │ │ [break] │ macro_source=122 │ │ [=] │ │ │ lastref :: Identifier │ scope_layer=1 │ │ 0 :: Value │ macro_source=122 │ │ [for] │ │ │ [=] │ │ │ i :: Identifier │ scope_layer=1 │ │ [call] │ │ │ : :: Identifier │ scope_layer=1 │ │ [call] │ │ │ length :: Identifier │ scope_layer=1 │ │ anchors :: Identifier │ scope_layer=1 │ │ -1 :: Value │ macro_source=122 │ │ 1 :: Value │ macro_source=122 │ │ [block] │ │ │ [if] │ │ │ [call] │ │ │ ismatchop :: Identifier │ scope_layer=1 │ │ [.] │ │ │ [ref] │ │ │ anchors :: Identifier │ scope_layer=1 │ │ i :: Identifier │ scope_layer=1 │ │ [inert] │ │ │ op :: Identifier │ │ │ [block] │ │ │ [=] │ │ │ lastref :: Identifier │ scope_layer=1 │ │ [.] │ │ │ [ref] │ │ │ anchors :: Identifier │ scope_layer=1 │ │ i :: Identifier │ scope_layer=1 │ │ [inert] │ │ │ refpos :: Identifier │ │ │ [break] │ macro_source=122 │ │ [return] │ │ │ [call] │ │ │ new :: Identifier │ scope_layer=1 │ │ anchors :: Identifier │ scope_layer=1 │ │ firstref :: Identifier │ scope_layer=1 │ │ lastref :: Identifier │ scope_layer=1 │ │ [call] │ │ │ Base.Docs.doc! :: Value │ macro_source=122 │ │ BioAlignments :: Value │ macro_source=122 │ │ [call] │ │ │ Base.Docs.Binding :: Value │ macro_source=122 │ │ BioAlignments :: Value │ macro_source=122 │ │ [inert] │ │ │ Alignment :: Identifier │ │ │ [call] │ macro_source=122 │ │ Base.Docs.docstr :: Value │ macro_source=122 │ │ [call] │ macro_source=122 │ │ Core.svec :: Value │ macro_source=122 │ │ " Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n" :: Value │ macro_source=122 │ │ [call] │ macro_source=122 │ │ Dict{Symbol, Any} :: Value │ macro_source=122 │ │ :path => "/home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl" :: Value │ macro_source=122 │ │ :linenumber => 20 :: Value │ macro_source=122 │ │ :module => BioAlignments :: Value │ macro_source=122 │ │ [curly] │ │ │ Union :: Identifier │ scope_layer=1 │ │ [curly] │ │ │ Tuple :: Identifier │ scope_layer=1 │ │ [curly] │ │ │ Vector :: Identifier │ scope_layer=1 │ │ AlignmentAnchor :: Identifier │ scope_layer=1 │ │ [curly] │ │ │ Tuple :: Identifier │ scope_layer=1 │ │ [curly] │ │ │ Vector :: Identifier │ scope_layer=1 │ │ AlignmentAnchor :: Identifier │ scope_layer=1 │ │ Bool :: Identifier │ scope_layer=1 │ │ #1#val :: Identifier │ scope_layer=1 │ │ [call] │ │ │ Base.Docs.doc! :: Value │ macro_source=122 │ │ BioAlignments :: Value │ macro_source=122 │ │ [call] │ │ │ Base.Docs.Binding :: Value │ macro_source=122 │ │ BioAlignments :: Value │ │ │ [inert] │ jl_source=L65 │ │ Alignment :: Identifier │ │ │ [call] │ │ │ Base.Docs.docstr :: Value │ macro_source=122 │ │ [call] │ macro_source=122 │ │ Core.svec :: Value │ macro_source=122 │ │ "Defines how to align a given sequence onto a reference sequence.\nThe alignment is represented as a sequence of elementary operations (match, insertion, deletion etc)\nanchored to specific positions of the input and reference sequence.\n" :: Value │ macro_source=122 │ │ [call] │ │ │ Dict{Symbol, Any} :: Value │ macro_source=122 │ │ :path => "/home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl" :: Value │ macro_source=122 │ │ :linenumber => 9 :: Value │ macro_source=122 │ │ :module => BioAlignments :: Value │ macro_source=122 │ │ [call] │ │ │ Pair :: Value │ macro_source=122 │ │ [inert] │ │ │ fields :: Identifier │ │ │ [call] │ macro_source=122 │ │ Dict{Symbol, Any} :: Value │ macro_source=122 │ │ [curly] │ │ │ Union :: Identifier │ scope_layer=1 │ │ val :: Identifier │ scope_layer=3 │ │ │ │ file = "/home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl" │ │ line = 9 │ └ mod = BioAlignments │ ERROR: LoadError: LoweringError: │ #= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:25 =# - assignment syntax in structure fields is reserved │ Expression: │ (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (iteration (in i (call : 1 (call length anchors)))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= firstref (call + (. (ref anchors (call - i 1)) :refpos) 1)) (break))))) (= lastref 0) (for (iteration (in i (call : (call length anchors) -1 1))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= lastref (. (ref anchors i) :refpos)) (break))))) (return (call new anchors firstref lastref))))) │ Containing expressions: │ (block (:: anchors (curly Vector AlignmentAnchor)) (:: firstref Int) (:: lastref Int) (block (block (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (iteration (in i (call : 1 (call length anchors)))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= firstref (call + (. (ref anchors (call - i 1)) :refpos) 1)) (break))))) (= lastref 0) (for (iteration (in i (call : (call length anchors) -1 1))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= lastref (. (ref anchors i) :refpos)) (break))))) (return (call new anchors firstref lastref))))) (call Base.Docs.doc! BioAlignments (call Base.Docs.Binding BioAlignments :Alignment) (call Base.Docs.docstr (call Core.svec " Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n") (call Dict{Symbol, Any} :path => "/home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl" :linenumber => 20 :module => BioAlignments)) (curly Union (curly Tuple (curly Vector AlignmentAnchor)) (curly Tuple (curly Vector AlignmentAnchor) Bool))) #1#val))) │ │ Detailed provenance: │ (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (iteration (in i (call : 1 (call length anchors)))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= firstref (call + (. (ref anchors (call - i 1)) :refpos) 1)) (break))))) (= lastref 0) (for (iteration (in i (call : (call length anchors) -1 1))) (block (if (call ismatchop (. (ref anchors i) :op)) (block (= lastref (. (ref anchors i) :refpos)) (break))))) (return (call new anchors firstref lastref))))) │ └─ (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (= i (call : 1 (call length anchors))) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= firstref (call + (. (ref anchors (call - i 1)) (inert refpos)) 1)) (break))))) (= lastref 0) (for (= i (call : (call length anchors) -1 1)) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= lastref (. (ref anchors i) (inert refpos))) (break))))) (return (call new anchors firstref lastref))))) │ └─ (= #1#val (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (= i (call : 1 (call length anchors))) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= firstref (call + (. (ref anchors (call - i 1)) (inert refpos)) 1)) (break))))) (= lastref 0) (for (= i (call : (call length anchors) -1 1)) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= lastref (. (ref anchors i) (inert refpos))) (break))))) (return (call new anchors firstref lastref))))) │ ├─ @ /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:25 │ └─ (macrocall @doc :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 =#) "Defines how to align a given sequence onto a reference sequence.\nThe alignment is represented as a sequence of elementary operations (match, insertion, deletion etc)\nanchored to specific positions of the input and reference sequence.\n" (struct false Alignment (block (:: anchors (curly Vector AlignmentAnchor)) (:: firstref Int) (:: lastref Int) (macrocall @doc :(#= /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:20 =#) (-> " Alignment(anchors::Vector{AlignmentAnchor}, check=true)\n\nCreate an alignment object from a sequence of alignment anchors.\n" (block (function (call Alignment (:: anchors (curly Vector AlignmentAnchor)) (kw (:: check Bool) true)) (block (if check (block (call check_alignment_anchors anchors))) (= firstref 0) (for (= i (call : 1 (call length anchors))) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= firstref (call + (. (ref anchors (call - i 1)) (inert refpos)) 1)) (break))))) (= lastref 0) (for (= i (call : (call length anchors) -1 1)) (block (if (call ismatchop (. (ref anchors i) (inert op))) (block (= lastref (. (ref anchors i) (inert refpos))) (break))))) (return (call new anchors firstref lastref)))))))))) │ └─ @ /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 │ │ Stacktrace: │ [1] _collect_struct_fields(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, field_names::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_types::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_attrs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_docs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, inner_defs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, exs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, SubArray{Int64, 1, Vector{Int64}, Tuple{UnitRange{Int64}}, true}}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3184 │ ┌ [2] _collect_struct_fields(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, field_names::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_types::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_attrs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, field_docs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, inner_defs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, exs::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, SubArray{Int64, 1, Vector{Int64}, Tuple{UnitRange{Int64}}, true}}) │ │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3181 │ ╰──── repeated 2 times │ [4] expand_struct_def(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3754 │ [5] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4336 │ [6] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4152 │ [7] expand_assignment(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, is_const::Bool) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:1318 │ [8] expand_assignment(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:1268 │ [9] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4196 │ [10] expand_forms_2 │ @ /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4152 [inlined] │ [11] #expand_forms_2##2 │ @ /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4440 [inlined] │ [12] mapchildren(f::Base.JuliaLowering.var"#expand_forms_2##2#expand_forms_2##3"{Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}}, ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}) │ @ Base.JuliaSyntax /source/usr/share/julia/JuliaSyntax/src/porcelain/syntax_graph.jl:707 │ [13] expand_forms_2(ctx::Base.JuliaLowering.DesugaringContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}, docs::Nothing) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4440 │ [14] Dict{Int64, Int64}() │ @ Base /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4152 [inlined] │ [15] expand_forms_2(ctx::Base.JuliaLowering.MacroExpansionContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/desugaring.jl:4469 │ [16] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:30 │ [17] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:327 │ [18] top-level scope │ @ ~/.julia/packages/BioAlignments/I6ecx/src/BioAlignments.jl:93 │ [19] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [20] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [21] top-level scope │ @ stdin:5 │ [22] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [24] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [25] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [26] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/alignment.jl:9 │ in expression starting at /home/pkgeval/.julia/packages/BioAlignments/I6ecx/src/BioAlignments.jl:3 │ in expression starting at stdin:5 └ ┌ BurrowsWheelerAligner │ [Output was shown above] └ ┌ SIMD │ ┌ Info: JuliaLowering threw given input: │ │ code = │ │ :(#= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =# @generated function fneg(x::T, ::F = nothing) where {T <: LT{<:FloatingTypes}, F <: FPFlags} │ │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =# │ │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:187 =# │ │ fpflags = fp_str(F) │ │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:188 =# │ │ s = "%2 = fneg $(fpflags) $(llvm_type(T)) %0\nret $(llvm_type(T)) %2\n" │ │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:192 =# │ │ return $(Expr(:quote, quote │ │ $(Expr(:$, :(Expr(:meta, :inline)))) │ │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:194 =# │ │ Base.llvmcall($(Expr(:$, :s)), T, Tuple{T}, x) │ │ end)) │ │ end) │ │ st0 = │ │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source,__macro_ctx__ │ │ [macrocall] │ │ │ @generated :: Identifier │ │ │ :(#= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =#) :: Value │ │ │ [function] │ │ │ [where] │ │ │ [call] │ │ │ fneg :: Identifier │ │ │ [::] │ │ │ x :: Identifier │ │ │ T :: Identifier │ │ │ [kw] │ │ │ [::] │ │ │ F :: Identifier │ │ │ nothing :: Identifier │ │ │ [<:] │ │ │ T :: Identifier │ │ │ [curly] │ │ │ LT :: Identifier │ │ │ [<:] │ │ │ FloatingTypes :: Identifier │ │ │ [<:] │ │ │ F :: Identifier │ │ │ FPFlags :: Identifier │ │ │ [block] │ │ │ [=] │ │ │ fpflags :: Identifier │ │ │ [call] │ │ │ fp_str :: Identifier │ │ │ F :: Identifier │ │ │ [=] │ │ │ s :: Identifier │ │ │ [string] │ │ │ "%2 = fneg " :: Value │ │ │ fpflags :: Identifier │ │ │ " " :: Value │ │ │ [call] │ │ │ llvm_type :: Identifier │ │ │ T :: Identifier │ │ │ " %0\nret " :: Value │ │ │ [call] │ │ │ llvm_type :: Identifier │ │ │ T :: Identifier │ │ │ " %2\n" :: Value │ │ │ [return] │ │ │ [quote] │ │ │ [block] │ │ │ [$] │ │ │ [call] │ │ │ Expr :: Identifier │ │ │ [inert] │ │ │ meta :: Identifier │ │ │ [inert] │ │ │ inline :: Identifier │ │ │ [call] │ │ │ [.] │ │ │ Base :: Identifier │ │ │ [inert] │ │ │ llvmcall :: Identifier │ │ │ [$] │ │ │ s :: Identifier │ │ │ T :: Identifier │ │ │ [curly] │ │ │ Tuple :: Identifier │ │ │ T :: Identifier │ │ │ x :: Identifier │ │ │ │ │ st1 = │ │ SyntaxTree with attributes mod,kind,var_id,toplevel_pure,scope_type,macro_source,name_val,syntax_flags,meta,scope_layer,value,jl_source,is_toplevel_thunk,source │ │ [function] │ jl_source=L67 │ │ [where] │ scope_layer=1 │ │ [call] │ macro_source=65,scope_layer=1 │ │ fneg :: Identifier │ macro_source=65,scope_layer=1 │ │ [::] │ macro_source=65,scope_layer=1 │ │ x :: Identifier │ macro_source=65,scope_layer=1 │ │ T :: Identifier │ macro_source=65,scope_layer=1 │ │ [kw] │ macro_source=65,scope_layer=1 │ │ [::] │ macro_source=65,scope_layer=1 │ │ F :: Identifier │ macro_source=65,scope_layer=1 │ │ nothing :: Identifier │ macro_source=65,scope_layer=1 │ │ [<:] │ scope_layer=1 │ │ T :: Identifier │ macro_source=65,scope_layer=1 │ │ [curly] │ scope_layer=1 │ │ LT :: Identifier │ macro_source=65,scope_layer=1 │ │ [<:] │ scope_layer=1 │ │ FloatingTypes :: Identifier │ macro_source=65,scope_layer=1 │ │ [<:] │ scope_layer=1 │ │ F :: Identifier │ macro_source=65,scope_layer=1 │ │ FPFlags :: Identifier │ macro_source=65,scope_layer=1 │ │ [block] │ jl_source=L67 │ │ [if] │ jl_source=L67 │ │ [generated] │ macro_source=65,jl_source=L67 │ │ [block] │ scope_layer=1 │ │ [=] │ macro_source=65,scope_layer=1 │ │ fpflags :: Identifier │ macro_source=65,scope_layer=1 │ │ [call] │ macro_source=65,scope_layer=1 │ │ fp_str :: Identifier │ macro_source=65,scope_layer=1 │ │ F :: Identifier │ macro_source=65,scope_layer=1 │ │ [=] │ macro_source=65,scope_layer=1 │ │ s :: Identifier │ macro_source=65,scope_layer=1 │ │ [string] │ macro_source=65,scope_layer=1 │ │ "%2 = fneg " :: Value │ macro_source=65,scope_layer=1 │ │ fpflags :: Identifier │ macro_source=65,scope_layer=1 │ │ " " :: Value │ macro_source=65,scope_layer=1 │ │ [call] │ macro_source=65,scope_layer=1 │ │ llvm_type :: Identifier │ macro_source=65,scope_layer=1 │ │ T :: Identifier │ macro_source=65,scope_layer=1 │ │ " %0\nret " :: Value │ macro_source=65,scope_layer=1 │ │ [call] │ macro_source=65,scope_layer=1 │ │ llvm_type :: Identifier │ macro_source=65,scope_layer=1 │ │ T :: Identifier │ macro_source=65,scope_layer=1 │ │ " %2\n" :: Value │ macro_source=65,scope_layer=1 │ │ [return] │ scope_layer=1 │ │ [call] │ jl_source=L67 │ │ Base.JuliaLowering.interpolate_ast :: Value │ jl_source=L67 │ │ Expr :: Value │ jl_source=L67 │ │ [inert] │ jl_source=L67 │ │ [block] │ │ │ [$] │ │ │ [call] │ │ │ Expr :: Identifier │ │ │ [inert] │ │ │ meta :: Identifier │ │ │ [inert] │ │ │ inline :: Identifier │ │ │ [call] │ │ │ [.] │ │ │ Base :: Identifier │ │ │ [inert] │ │ │ llvmcall :: Identifier │ │ │ [$] │ │ │ s :: Identifier │ │ │ T :: Identifier │ │ │ [curly] │ │ │ Tuple :: Identifier │ │ │ T :: Identifier │ │ │ x :: Identifier │ │ │ [tuple] │ jl_source=L31 │ │ [call] │ scope_layer=1 │ │ Expr :: Identifier │ macro_source=65,scope_layer=1 │ │ [inert] │ │ │ meta :: Identifier │ │ │ [inert] │ │ │ inline :: Identifier │ │ │ [tuple] │ jl_source=L31 │ │ s :: Identifier │ macro_source=65,scope_layer=1 │ │ [block] │ jl_source=L67 │ │ [meta] │ jl_source=L67 │ │ generated_only :: Identifier │ scope_layer=2,jl_source=L67 │ │ [return] │ macro_source=65,jl_source=L67 │ │ nothing :: Value │ macro_source=65,jl_source=L67 │ │ │ │ file = "/home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl" │ │ line = 186 │ └ mod = SIMD.Intrinsics │ ERROR: LoadError: internal lowering bug: │ #= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =# - `jl_assert(!(haskey(ssa_rewrites, lhs_id)), _)`: multiple assignments to ssavalue │ Expression: │ (= #₁ (call core.TypeVar :#T1 #₆₅/FloatingTypes)) │ Containing expressions: │ (= #₁ (call core.TypeVar :#T1 #₆₅/FloatingTypes)) │ │ Detailed provenance: │ (= #₁ (call core.TypeVar :#T1 #₆₅/FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:366 =# │ └─ (= #₁ (call core.TypeVar :#T1 #₉/FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/closure_conversion.jl:197 =# │ └─ (= #₁ (call core.TypeVar :#T1 #₉/FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =# │ └─ (= #₁ (call core.TypeVar :#T1 FloatingTypes)) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:231 =# │ └─ (= #₁ (call core.TypeVar :#T1 FloatingTypes)) │ └─ (call core.TypeVar :#T1 FloatingTypes) @#= /source/usr/share/julia/JuliaLowering/src/desugaring.jl:3025 =# │ └─ (<: FloatingTypes) │ └─ (<: FloatingTypes) │ └─ (<: FloatingTypes) │ ├─ (<: FloatingTypes) │ │ └─ @ /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 │ └─ (macrocall @generated :(#= /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 =#) (function (where (call fneg (:: x T) (kw (:: F) nothing)) (<: T (curly LT (<: FloatingTypes))) (<: F FPFlags)) (block (= fpflags (call fp_str F)) (= s (string "%2 = fneg " fpflags " " (call llvm_type T) " %0\nret " (call llvm_type T) " %2\n")) (return (quote (block ($ (call Expr (inert meta) (inert inline))) (call (. Base (inert llvmcall)) ($ s) T (curly Tuple T) x))))))) │ └─ @ /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:186 │ │ Stacktrace: │ [1] iterate(A::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}) │ @ Base /source/usr/share/julia/JuliaLowering/src/ast.jl:23 [inlined] │ [2] renumber_body(ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, input_code::Base.JuliaSyntax.SyntaxList{Dict{Symbol, Dict{Int64, Any}}, Vector{Int64}}, slot_rewrites::Dict{Int64, Int64}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1106 │ [3] compile_lambda(outer_ctx::Base.JuliaLowering.LinearIRContext{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1223 │ [4] linearize_ir(ctx::Base.JuliaLowering.ClosureConversionCtx{Dict{Symbol, Dict{Int64, Any}}}, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/linear_ir.jl:1253 │ [5] core_lowering_hook(code::Any, mod::Module, file::String, line::UInt64, world::UInt64, _warn::Bool) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/hooks.jl:33 │ [6] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:327 │ [7] top-level scope │ @ ~/.julia/packages/SIMD/UiGbs/src/SIMD.jl:23 │ [8] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [10] top-level scope │ @ stdin:5 │ [11] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [13] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [14] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [15] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/LLVM_intrinsics.jl:2 │ in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/SIMD.jl:1 │ in expression starting at stdin:5 └ ┌ XAM │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("00701ae9-d1dc-5365-b64a-a3a3ebf5695e"), "BioAlignments") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2818 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2672 │ [4] macro expansion │ @ ./loading.jl:2599 [inlined] │ [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String) │ @ Base ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2563 │ [7] require │ @ ./loading.jl:2539 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base ./module.jl:36 [inlined] │ [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) │ @ Base ./module.jl:111 │ [10] eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195 │ [11] top-level scope │ @ ~/.julia/packages/XAM/gm2PK/src/sam/sam.jl:8 │ [12] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:327 │ [13] top-level scope │ @ ~/.julia/packages/XAM/gm2PK/src/XAM.jl:16 │ [14] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [16] top-level scope │ @ stdin:5 │ [17] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [19] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [20] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [21] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/XAM/gm2PK/src/sam/sam.jl:4 │ in expression starting at /home/pkgeval/.julia/packages/XAM/gm2PK/src/XAM.jl:1 │ in expression starting at stdin:5 └ ┌ FASTX → BioSequencesExt │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("c2308a5c-f048-11e8-3e8a-31650f418d12"), "FASTX") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:56 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2818 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2672 │ [4] macro expansion │ @ ./loading.jl:2599 [inlined] │ [5] string(::String, ::Union{Char, SubString{String}, String, Symbol}, ::Symbol, ::String) │ @ Base ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2563 │ [7] require │ @ ./loading.jl:2539 [inlined] │ [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) │ @ Base ./module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 │ [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:195 │ [12] top-level scope │ @ ~/.julia/packages/FASTX/KGKFv/ext/BioSequencesExt.jl:3 │ [13] include(mod::Module, _path::String) │ @ Base ./Base.jl:326 │ [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3271 │ [15] top-level scope │ @ stdin:5 │ [16] eval(m::Module, e::Any) │ @ Core ./boot.jl:517 │ [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3113 │ [18] push!(a::Vector{SubString{String}}, item::String) │ @ Base ./loading.jl:3123 [inlined] │ [19] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:353 │ [20] _start() │ @ Base ./client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/FASTX/KGKFv/ext/BioSequencesExt.jl:1 │ in expression starting at stdin:5 └ ERROR: LoadError: The following 7 packages failed to precompile: FASTX Failed to precompile FASTX [c2308a5c-f048-11e8-3e8a-31650f418d12] to "/home/pkgeval/.julia/compiled/v1.14/FASTX/jl_2QmuOm" (ProcessExited(1)). Automa Failed to precompile Automa [67c07d97-cdcb-5c2c-af73-a7f9c32a568b] to "/home/pkgeval/.julia/compiled/v1.14/Automa/jl_g3o4GP" (ProcessExited(1)). BioAlignments Failed to precompile BioAlignments [00701ae9-d1dc-5365-b64a-a3a3ebf5695e] to "/home/pkgeval/.julia/compiled/v1.14/BioAlignments/jl_HdkwSz" (ProcessExited(1)). BurrowsWheelerAligner Failed to precompile BurrowsWheelerAligner [231d3afb-1936-45f0-8367-36f73a875095] to "/home/pkgeval/.julia/compiled/v1.14/BurrowsWheelerAligner/jl_Ih2dOv" (ProcessExited(1)). SIMD Failed to precompile SIMD [fdea26ae-647d-5447-a871-4b548cad5224] to "/home/pkgeval/.julia/compiled/v1.14/SIMD/jl_070kyK" (ProcessExited(1)). XAM Failed to precompile XAM [d759349c-bcba-11e9-07c2-5b90f8f05f7c] to "/home/pkgeval/.julia/compiled/v1.14/XAM/jl_SratRv" (ProcessExited(1)). FASTX → BioSequencesExt Failed to precompile BioSequencesExt [baf92119-a789-5020-bf37-768157dc338a] to "/home/pkgeval/.julia/compiled/v1.14/BioSequencesExt/jl_w4uLvb" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/BurrowsWheelerAligner/RB6Ad/test/runtests.jl:1 Testing failed after 251.42s ERROR: LoadError: Package BurrowsWheelerAligner errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] Cmd(cmd::Cmd) @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3110 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [7] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:326 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:355 [12] _start() @ Base ./client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2194.95s: package fails to precompile