Package evaluation to test BioSequences on Julia 1.14.0-DEV.2226 (797a5ef2b0*) started at 2026-05-23T18:14:54.937


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 18.63s


################################################################################
# Installation
#

Installing BioSequences...
   Resolving package versions...
   Installed Twiddle ───────── v1.1.2
   Installed BioSymbols ────── v5.2.0
   Installed Preferences ───── v1.5.2
   Installed PrecompileTools ─ v1.3.4
   Installed BioSequences ──── v3.5.1
    Updating `~/.julia/environments/v1.14/Project.toml`
  [7e6ae17a] + BioSequences v3.5.1
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [7e6ae17a] + BioSequences v3.5.1
  [3c28c6f8] + BioSymbols v5.2.0
  [aea7be01] + PrecompileTools v1.3.4
  [21216c6a] + Preferences v1.5.2
  [7200193e] + Twiddle v1.1.2
  [ade2ca70] + Dates v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.13.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0

Installation completed after 4.62s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling project...
   5.8 s  ✓ TestEnv
  1 dependency successfully precompiled in 6 seconds. 27 already precompiled.

Precompiling package dependencies...
Precompiling project...
   0.6 s  ✓ StatsAPI
   0.5 s  ✓ Twiddle
   1.0 s  ✓ DocStringExtensions
 147.6 s  ✓ OrderedCollections
   0.9 s  ✓ DataAPI
   1.0 s  ✓ Statistics
  37.9 s  ✓ PtrArrays
   2.4 s  ✓ IrrationalConstants
   1.0 s  ✓ StableRNGs
   2.2 s  ✓ Preferences
 177.4 s  ✓ DataStructures
  62.7 s  ✓ Missings
  39.0 s  ✓ Statistics → SparseArraysExt
  39.1 s  ✓ AliasTables
   1.6 s  ✓ LogExpFunctions
   2.6 s  ✓ JLLWrappers
   2.4 s  ✓ PrecompileTools
  38.3 s  ✓ SortingAlgorithms
   3.0 s  ✓ Libiconv_jll
 108.2 s  ✓ BioSymbols
ERROR: LoadError: Creating a new global in closed module `IrrationalConstants` (`Mad_constant`) breaks incremental compilation because the side effects will not be permanent.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/StatsBase/lRQEN/src/scalarstats.jl:527
  [2] macro expansion
    @ ~/.julia/packages/IrrationalConstants/RokwY/src/macro.jl:107 [inlined]
  [3] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:327
  [4] top-level scope
    @ ~/.julia/packages/StatsBase/lRQEN/src/StatsBase.jl:251
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
  [6] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3271
  [7] top-level scope
    @ stdin:5
  [8] eval(m::Module, e::Any)
    @ Core ./boot.jl:517
  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3113
 [10] push!(a::Vector{SubString{String}}, item::String)
    @ Base ./loading.jl:3123 [inlined]
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:353
 [12] _start()
    @ Base ./client.jl:596
in expression starting at /home/pkgeval/.julia/packages/StatsBase/lRQEN/src/scalarstats.jl:527
in expression starting at /home/pkgeval/.julia/packages/StatsBase/lRQEN/src/StatsBase.jl:1
in expression starting at stdin:5
              ✗ StatsBase
  49.0 s  ✓ StringEncodings
 102.0 s  ✓ BioSequences
  64.2 s  ✓ YAML
  23 dependencies successfully precompiled in 1010 seconds. 14 already precompiled.

Precompilation completed after 1044.88s


################################################################################
# Testing
#

     Testing BioSequences
      Status `/tmp/jl_OdbfaZ/Project.toml`
  [7e6ae17a] BioSequences v3.5.1
  [3c28c6f8] BioSymbols v5.2.0
  [aea7be01] PrecompileTools v1.3.4
  [860ef19b] StableRNGs v1.0.4
  [2913bbd2] StatsBase v0.34.10
  [7200193e] Twiddle v1.1.2
  [ddb6d928] YAML v0.4.16
  [37e2e46d] LinearAlgebra v1.13.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_OdbfaZ/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [7e6ae17a] BioSequences v3.5.1
  [3c28c6f8] BioSymbols v5.2.0
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.4
  [ffbed154] DocStringExtensions v0.9.5
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.8.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.1
  [aea7be01] PrecompileTools v1.3.4
  [21216c6a] Preferences v1.5.2
  [43287f4e] PtrArrays v1.4.0
  [a2af1166] SortingAlgorithms v1.2.2
  [860ef19b] StableRNGs v1.0.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [2913bbd2] StatsBase v0.34.10
  [69024149] StringEncodings v0.3.7
  [7200193e] Twiddle v1.1.2
  [ddb6d928] YAML v0.4.16
  [94ce4f54] Libiconv_jll v1.18.0+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.13.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.5.1+0
  [4536629a] OpenBLAS_jll v0.3.33+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
     Testing Running tests...
ERROR: LoadError: Creating a new global in closed module `IrrationalConstants` (`Mad_constant`) breaks incremental compilation because the side effects will not be permanent.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/StatsBase/lRQEN/src/scalarstats.jl:527
  [2] macro expansion
    @ ~/.julia/packages/IrrationalConstants/RokwY/src/macro.jl:107 [inlined]
  [3] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:327
  [4] top-level scope
    @ ~/.julia/packages/StatsBase/lRQEN/src/StatsBase.jl:251
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
  [6] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3271
  [7] top-level scope
    @ stdin:5
  [8] eval(m::Module, e::Any)
    @ Core ./boot.jl:517
  [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3113
 [10] push!(a::Vector{SubString{String}}, item::String)
    @ Base ./loading.jl:3123 [inlined]
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:353
 [12] _start()
    @ Base ./client.jl:596
in expression starting at /home/pkgeval/.julia/packages/StatsBase/lRQEN/src/scalarstats.jl:527
in expression starting at /home/pkgeval/.julia/packages/StatsBase/lRQEN/src/StatsBase.jl:1
in expression starting at stdin:5
  1 dependency had output during precompilation:
┌ StatsBase
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

StatsBase 
Failed to precompile StatsBase [2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91] to "/home/pkgeval/.julia/compiled/v1.14/StatsBase/jl_3SKRnu" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/BioSequences/31amM/test/runtests.jl:1

Testing failed after 427.7s

ERROR: LoadError: Package BioSequences errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247
  [3] Cmd(cmd::Cmd)
    @ Base /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3110 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
  [8] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:326
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:355
 [12] _start()
    @ Base ./client.jl:596
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 1518.33s: package fails to precompile