Package evaluation to load SpineBasedRecordLinkage on Julia 1.14.0-DEV.1352 (749bc618c5*) started at 2025-12-09T21:43:20.154


################################################################################
# Set-up
#


Set-up completed after 0.14s


################################################################################
# Installation
#

Installing SpineBasedRecordLinkage...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [c1ccfb80] + SpineBasedRecordLinkage v0.4.2
    Updating `~/.julia/environments/v1.14/Manifest.toml`
⌅ [336ed68f] + CSV v0.9.11
⌅ [324d7699] + CategoricalArrays v0.10.8
  [944b1d66] + CodecZlib v0.7.8
  [34da2185] + Compat v4.18.1
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
  [864edb3b] + DataStructures v0.19.3
  [e2d170a0] + DataValueInterfaces v1.0.0
  [b4f34e82] + Distances v0.10.12
  [48062228] + FilePathsBase v0.9.24
  [842dd82b] + InlineStrings v1.4.5
  [41ab1584] + InvertedIndices v1.3.1
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [08abe8d2] + PrettyTables v3.1.2
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [b4d66a32] + Schemata v3.0.2
  [91c51154] + SentinelArrays v1.4.8
  [a2af1166] + SortingAlgorithms v1.2.2
  [c1ccfb80] + SpineBasedRecordLinkage v0.4.2
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [88034a9c] + StringDistances v0.11.3
  [892a3eda] + StringManipulation v0.4.2
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [3bb67fe8] + TranscodingStreams v0.11.3
  [ea10d353] + WeakRefStrings v1.4.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [6462fe0b] + Sockets v1.11.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.79s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 14.47s



################################################################################
# Loading
#

Loading SpineBasedRecordLinkage...
ERROR: LoadError: InitError: TypeError: in typeassert, expected Tuple{Vector{UInt8}, Int64, Int64, Union{Nothing, String}}, got a value of type Nothing
Stacktrace:
  [1] getsource(x::Any, buffer_in_memory::Bool)
    @ CSV ~/.julia/packages/CSV/9LsxT/src/utils.jl:295
  [2] macro expansion
    @ ~/.julia/packages/CSV/9LsxT/src/context.jl:324 [inlined]
  [3] Context
    @ ./none:0 [inlined]
  [4] CSV.Context(source::CSV.Arg, header::CSV.Arg, normalizenames::CSV.Arg, datarow::CSV.Arg, skipto::CSV.Arg, footerskip::CSV.Arg, transpose::CSV.Arg, comment::CSV.Arg, ignoreemptyrows::CSV.Arg, ignoreemptylines::CSV.Arg, select::CSV.Arg, drop::CSV.Arg, limit::CSV.Arg, buffer_in_memory::CSV.Arg, threaded::CSV.Arg, ntasks::CSV.Arg, tasks::CSV.Arg, rows_to_check::CSV.Arg, lines_to_check::CSV.Arg, missingstrings::CSV.Arg, missingstring::CSV.Arg, delim::CSV.Arg, ignorerepeated::CSV.Arg, quoted::CSV.Arg, quotechar::CSV.Arg, openquotechar::CSV.Arg, closequotechar::CSV.Arg, escapechar::CSV.Arg, dateformat::CSV.Arg, dateformats::CSV.Arg, decimal::CSV.Arg, truestrings::CSV.Arg, falsestrings::CSV.Arg, type::CSV.Arg, types::CSV.Arg, typemap::CSV.Arg, pool::CSV.Arg, downcast::CSV.Arg, lazystrings::CSV.Arg, stringtype::CSV.Arg, strict::CSV.Arg, silencewarnings::CSV.Arg, maxwarnings::CSV.Arg, debug::CSV.Arg, parsingdebug::CSV.Arg, validate::CSV.Arg, streaming::CSV.Arg)
    @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:0
  [5] CSV.Context(source::IOBuffer; header::Int64, normalizenames::Bool, datarow::Int64, skipto::Int64, footerskip::Int64, transpose::Bool, comment::Nothing, ignoreemptyrows::Bool, ignoreemptylines::Nothing, select::Nothing, drop::Nothing, limit::Nothing, buffer_in_memory::Bool, threaded::Nothing, ntasks::Nothing, tasks::Nothing, rows_to_check::Int64, lines_to_check::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quoted::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, truestrings::Vector{String}, falsestrings::Vector{String}, type::Nothing, types::Nothing, typemap::Dict{Type, Type}, pool::Float64, downcast::Bool, lazystrings::Bool, stringtype::Type{InlineStrings.InlineString}, strict::Bool, silencewarnings::Bool, maxwarnings::Int64, debug::Bool, parsingdebug::Bool, validate::Bool)
    @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:199
  [6] CSV.Context(source::IOBuffer)
    @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:147
  [7] __init__()
    @ CSV ~/.julia/packages/CSV/9LsxT/src/CSV.jl:98
  [8] run_module_init(mod::Module, i::Int64)
    @ Base ./loading.jl:1547
  [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1535
 [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)
    @ Base ./loading.jl:1423
 [11] _include_from_serialized
    @ ./loading.jl:1380 [inlined]
 [12] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})
    @ Base ./loading.jl:2255
 [13] _require_search_from_serialized
    @ ./loading.jl:2149 [inlined]
 [14] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2806
 [15] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
 [16] macro expansion
    @ ./loading.jl:2593 [inlined]
 [17] macro expansion
    @ ./lock.jl:376 [inlined]
 [18] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
 [19] require
    @ ./loading.jl:2533 [inlined]
 [20] eval_import_path
    @ ./module.jl:36 [inlined]
 [21] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [22] _eval_using
    @ ./module.jl:137 [inlined]
 [23] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [24] top-level scope
    @ ~/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:6
 [25] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [26] top-level scope
    @ ~/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:10
 [27] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [28] top-level scope
    @ ~/.julia/packages/Schemata/fWoTd/src/Schemata.jl:9
 [29] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [30] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [31] top-level scope
    @ stdin:5
 [32] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [33] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [34] include_string
    @ ./loading.jl:3102 [inlined]
 [35] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [36] _start()
    @ Base ./client.jl:577
during initialization of module CSV
in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:1
in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:1
in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/Schemata.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("b4d66a32-c6c0-5461-b6fa-34bb9cecaf85"), "Schemata") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/unexported/config.jl:6
 [13] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [14] top-level scope
    @ ~/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/SpineBasedRecordLinkage.jl:7
 [15] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [17] top-level scope
    @ stdin:5
 [18] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [20] include_string
    @ ./loading.jl:3102 [inlined]
 [21] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [22] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/unexported/config.jl:1
in expression starting at /home/pkgeval/.julia/packages/SpineBasedRecordLinkage/fKjGO/src/SpineBasedRecordLinkage.jl:1
in expression starting at stdin:5

  2 dependencies had output during precompilation:
┌ Schemata
│  ERROR: LoadError: InitError: TypeError: in typeassert, expected Tuple{Vector{UInt8}, Int64, Int64, Union{Nothing, String}}, got a value of type Nothing
│  Stacktrace:
│    [1] getsource(x::Any, buffer_in_memory::Bool)
│      @ CSV ~/.julia/packages/CSV/9LsxT/src/utils.jl:295
│    [2] macro expansion
│      @ ~/.julia/packages/CSV/9LsxT/src/context.jl:324 [inlined]
│    [3] Context
│      @ ./none:0 [inlined]
│    [4] CSV.Context(source::CSV.Arg, header::CSV.Arg, normalizenames::CSV.Arg, datarow::CSV.Arg, skipto::CSV.Arg, footerskip::CSV.Arg, transpose::CSV.Arg, comment::CSV.Arg, ignoreemptyrows::CSV.Arg, ignoreemptylines::CSV.Arg, select::CSV.Arg, drop::CSV.Arg, limit::CSV.Arg, buffer_in_memory::CSV.Arg, threaded::CSV.Arg, ntasks::CSV.Arg, tasks::CSV.Arg, rows_to_check::CSV.Arg, lines_to_check::CSV.Arg, missingstrings::CSV.Arg, missingstring::CSV.Arg, delim::CSV.Arg, ignorerepeated::CSV.Arg, quoted::CSV.Arg, quotechar::CSV.Arg, openquotechar::CSV.Arg, closequotechar::CSV.Arg, escapechar::CSV.Arg, dateformat::CSV.Arg, dateformats::CSV.Arg, decimal::CSV.Arg, truestrings::CSV.Arg, falsestrings::CSV.Arg, type::CSV.Arg, types::CSV.Arg, typemap::CSV.Arg, pool::CSV.Arg, downcast::CSV.Arg, lazystrings::CSV.Arg, stringtype::CSV.Arg, strict::CSV.Arg, silencewarnings::CSV.Arg, maxwarnings::CSV.Arg, debug::CSV.Arg, parsingdebug::CSV.Arg, validate::CSV.Arg, streaming::CSV.Arg)
│      @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:0
│    [5] CSV.Context(source::IOBuffer; header::Int64, normalizenames::Bool, datarow::Int64, skipto::Int64, footerskip::Int64, transpose::Bool, comment::Nothing, ignoreemptyrows::Bool, ignoreemptylines::Nothing, select::Nothing, drop::Nothing, limit::Nothing, buffer_in_memory::Bool, threaded::Nothing, ntasks::Nothing, tasks::Nothing, rows_to_check::Int64, lines_to_check::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quoted::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, truestrings::Vector{String}, falsestrings::Vector{String}, type::Nothing, types::Nothing, typemap::Dict{Type, Type}, pool::Float64, downcast::Bool, lazystrings::Bool, stringtype::Type{InlineStrings.InlineString}, strict::Bool, silencewarnings::Bool, maxwarnings::Int64, debug::Bool, parsingdebug::Bool, validate::Bool)
│      @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:199
│    [6] CSV.Context(source::IOBuffer)
│      @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:147
│    [7] __init__()
│      @ CSV ~/.julia/packages/CSV/9LsxT/src/CSV.jl:98
│    [8] run_module_init(mod::Module, i::Int64)
│      @ Base ./loading.jl:1547
│    [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
│      @ Base ./loading.jl:1535
│   [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)
│      @ Base ./loading.jl:1423
│   [11] _include_from_serialized
│      @ ./loading.jl:1380 [inlined]
│   [12] _require_search_from_serialized(pkg::Base.PkgId, sourcespec::Base.PkgLoadSpec, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})
│      @ Base ./loading.jl:2255
│   [13] _require_search_from_serialized
│      @ ./loading.jl:2149 [inlined]
│   [14] __require_prelocked(pkg::Base.PkgId, env::String)
│      @ Base ./loading.jl:2806
│   [15] _require_prelocked(uuidkey::Base.PkgId, env::String)
│      @ Base ./loading.jl:2665
│   [16] macro expansion
│      @ ./loading.jl:2593 [inlined]
│   [17] macro expansion
│      @ ./lock.jl:376 [inlined]
│   [18] __require(into::Module, mod::Symbol)
│      @ Base ./loading.jl:2557
│   [19] require
│      @ ./loading.jl:2533 [inlined]
│   [20] eval_import_path
│      @ ./module.jl:36 [inlined]
│   [21] eval_import_path_all(at::Module, path::Expr, keyword::String)
│      @ Base ./module.jl:60
│   [22] _eval_using
│      @ ./module.jl:137 [inlined]
│   [23] _eval_using(to::Module, path::Expr)
│      @ Base ./module.jl:137
│   [24] top-level scope
│      @ ~/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:6
│   [25] include(mapexpr::Function, mod::Module, _path::String)
│      @ Base ./Base.jl:310
│   [26] top-level scope
│      @ ~/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:10
│   [27] include(mapexpr::Function, mod::Module, _path::String)
│      @ Base ./Base.jl:310
│   [28] top-level scope
│      @ ~/.julia/packages/Schemata/fWoTd/src/Schemata.jl:9
│   [29] include(mod::Module, _path::String)
│      @ Base ./Base.jl:309
│   [30] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base ./loading.jl:3250
│   [31] top-level scope
│      @ stdin:5
│   [32] eval(m::Module, e::Any)
│      @ Core ./boot.jl:489
│   [33] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base ./loading.jl:3092
│   [34] include_string
│      @ ./loading.jl:3102 [inlined]
│   [35] exec_options(opts::Base.JLOptions)
│      @ Base ./client.jl:342
│   [36] _start()
│      @ Base ./client.jl:577
│  during initialization of module CSV
│  in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare/ondisk_table.jl:1
│  in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/compare_table_to_schema.jl:1
│  in expression starting at /home/pkgeval/.julia/packages/Schemata/fWoTd/src/Schemata.jl:1
│  in expression starting at stdin:5
└  
┌ SpineBasedRecordLinkage
│  [Output was shown above]
└  
ERROR: The following 2 packages failed to precompile:

Schemata 
Failed to precompile Schemata [b4d66a32-c6c0-5461-b6fa-34bb9cecaf85] to "/home/pkgeval/.julia/compiled/v1.14/Schemata/jl_b46U9N" (ProcessExited(1)).

SpineBasedRecordLinkage 
Failed to precompile SpineBasedRecordLinkage [c1ccfb80-616c-11e9-2032-47e8246e4458] to "/home/pkgeval/.julia/compiled/v1.14/SpineBasedRecordLinkage/jl_EOiBs5" (ProcessExited(1)).


Loading failed after 177.87s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using SpineBasedRecordLinkage'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:211
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:202

PkgEval failed after 231.89s: package fails to precompile