Package evaluation to load PlantGeom on Julia 1.14.0-DEV.1352 (749bc618c5*) started at 2025-12-10T03:35:27.668 ################################################################################ # Set-up # Set-up completed after 0.14s ################################################################################ # Installation # Installing PlantGeom... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [5edaa67e] + PlantGeom v0.14.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [0e736298] + Bessels v0.2.8 [96374032] + CRlibm v1.0.2 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [7a955b69] + CircularArrays v1.4.0 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [03fe91ce] + Colorfy v1.1.2 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 ⌅ [b46f11dc] + CoordRefSystems v0.18.10 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [927a84f5] + DelaunayTriangulation v1.6.6 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.9 [8f5d6c58] + EzXML v1.2.3 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.0 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.13.2 [076d061b] + HashArrayMappedTries v0.2.0 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [0c81fc1b] + InputBuffers v1.1.1 [d1acc4aa] + IntervalArithmetic v1.0.2 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.3 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 ⌅ [eacbb407] + Meshes v0.54.6 [fa8bd995] + MetaGraphsNext v0.7.4 [e1d29d7a] + Missings v1.2.0 [dd4a991b] + MultiScaleTreeGraph v0.14.4 [af6c499f] + MutableNamedTuples v0.1.3 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.25 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [5edaa67e] + PlantGeom v0.14.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [94ee1d12] + Quaternions v0.7.7 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [5eaf0fd0] + RoundingEmulator v0.2.1 [431bcebd] + SciMLPublic v1.0.0 [7e506255] + ScopedValues v1.5.0 [91c51154] + SentinelArrays v1.4.8 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [892a3eda] + StringManipulation v0.4.2 [09ab397b] + StructArrays v0.7.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [06e1c1a7] + TiledIteration v0.5.0 [3bb67fe8] + TranscodingStreams v0.11.3 [28dd2a49] + TransformsBase v1.6.0 [1986cc42] + Unitful v1.27.0 [fdbf4ff8] + XLSX v0.10.4 [49080126] + ZipArchives v2.6.0 [a5390f91] + ZipFile v0.10.1 [e88e6eb3] + Zygote v0.7.10 [700de1a5] + ZygoteRules v0.2.7 [4e9b3aee] + CRlibm_jll v1.0.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [02c8fc9c] + XML2_jll v2.15.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.86s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 13.79s ################################################################################ # Loading # Loading PlantGeom... ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609:19  # to create a Diagonal  tr(x), function (Δ::Number) # └─────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/lib/array.jl:609  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/Zygote.jl:40  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [9] include_string  @ ./loading.jl:3102 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/Zygote.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("e88e6eb3-aa80-5325-afca-941959d7151f"), "Zygote") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/Zygote/55SqB/ext/ZygoteDistancesExt.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [18] include_string  @ ./loading.jl:3102 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/ext/ZygoteDistancesExt.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("e88e6eb3-aa80-5325-afca-941959d7151f"), "Zygote") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/Zygote/55SqB/ext/ZygoteColorsExt.jl:3  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [18] include_string  @ ./loading.jl:3102 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/ext/ZygoteColorsExt.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("e88e6eb3-aa80-5325-afca-941959d7151f"), "Zygote") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base ./module.jl:101  [11] top-level scope  @ ~/.julia/packages/CoordRefSystems/g6nzK/src/CoordRefSystems.jl:10  [12] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [17] include_string  @ ./loading.jl:3102 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [19] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/CoordRefSystems/g6nzK/src/CoordRefSystems.jl:5 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("b46f11dc-f210-4604-bfba-323c1ec968cb"), "CoordRefSystems") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/Meshes/Ncjx3/src/Meshes.jl:7  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [18] include_string  @ ./loading.jl:3102 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Meshes/Ncjx3/src/Meshes.jl:5 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("eacbb407-ea5a-433e-ab97-5258b1ca43fa"), "Meshes") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)  @ Base ./module.jl:111  [10] top-level scope  @ ~/.julia/packages/PlantGeom/DJ8Qn/src/PlantGeom.jl:6  [11] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [12] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [13] top-level scope  @ stdin:5  [14] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [16] include_string  @ ./loading.jl:3102 [inlined]  [17] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [18] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/PlantGeom/DJ8Qn/src/PlantGeom.jl:1 in expression starting at stdin:5 6 dependencies had output during precompilation: ┌ Zygote → ZygoteColorsExt │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("e88e6eb3-aa80-5325-afca-941959d7151f"), "Zygote") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2813 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2665 │ [4] macro expansion │ @ ./loading.jl:2593 [inlined] │ [5] macro expansion │ @ ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2557 │ [7] require │ @ ./loading.jl:2533 [inlined] │ [8] eval_import_path │ @ ./module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [10] _eval_using │ @ ./module.jl:137 [inlined] │ [11] _eval_using(to::Module, path::Expr) │ @ Base ./module.jl:137 │ [12] top-level scope │ @ ~/.julia/packages/Zygote/55SqB/ext/ZygoteColorsExt.jl:3 │ [13] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3250 │ [15] top-level scope │ @ stdin:5 │ [16] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3092 │ [18] include_string │ @ ./loading.jl:3102 [inlined] │ [19] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:342 │ [20] _start() │ @ Base ./client.jl:577 │ in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/ext/ZygoteColorsExt.jl:1 │ in expression starting at stdin:5 └ ┌ Meshes │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("b46f11dc-f210-4604-bfba-323c1ec968cb"), "CoordRefSystems") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2813 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2665 │ [4] macro expansion │ @ ./loading.jl:2593 [inlined] │ [5] macro expansion │ @ ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2557 │ [7] require │ @ ./loading.jl:2533 [inlined] │ [8] eval_import_path │ @ ./module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [10] _eval_using │ @ ./module.jl:137 [inlined] │ [11] _eval_using(to::Module, path::Expr) │ @ Base ./module.jl:137 │ [12] top-level scope │ @ ~/.julia/packages/Meshes/Ncjx3/src/Meshes.jl:7 │ [13] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3250 │ [15] top-level scope │ @ stdin:5 │ [16] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3092 │ [18] include_string │ @ ./loading.jl:3102 [inlined] │ [19] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:342 │ [20] _start() │ @ Base ./client.jl:577 │ in expression starting at /home/pkgeval/.julia/packages/Meshes/Ncjx3/src/Meshes.jl:5 │ in expression starting at stdin:5 └ ┌ CoordRefSystems │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("e88e6eb3-aa80-5325-afca-941959d7151f"), "Zygote") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2813 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2665 │ [4] macro expansion │ @ ./loading.jl:2593 [inlined] │ [5] macro expansion │ @ ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2557 │ [7] require │ @ ./loading.jl:2533 [inlined] │ [8] eval_import_path │ @ ./module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 │ [11] top-level scope │ @ ~/.julia/packages/CoordRefSystems/g6nzK/src/CoordRefSystems.jl:10 │ [12] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3250 │ [14] top-level scope │ @ stdin:5 │ [15] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3092 │ [17] include_string │ @ ./loading.jl:3102 [inlined] │ [18] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:342 │ [19] _start() │ @ Base ./client.jl:577 │ in expression starting at /home/pkgeval/.julia/packages/CoordRefSystems/g6nzK/src/CoordRefSystems.jl:5 │ in expression starting at stdin:5 └ ┌ PlantGeom │ [Output was shown above] └ ┌ Zygote → ZygoteDistancesExt │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("e88e6eb3-aa80-5325-afca-941959d7151f"), "Zygote") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2813 │ [3] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2665 │ [4] macro expansion │ @ ./loading.jl:2593 [inlined] │ [5] macro expansion │ @ ./lock.jl:376 [inlined] │ [6] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2557 │ [7] require │ @ ./loading.jl:2533 [inlined] │ [8] eval_import_path │ @ ./module.jl:36 [inlined] │ [9] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [10] _eval_using │ @ ./module.jl:137 [inlined] │ [11] _eval_using(to::Module, path::Expr) │ @ Base ./module.jl:137 │ [12] top-level scope │ @ ~/.julia/packages/Zygote/55SqB/ext/ZygoteDistancesExt.jl:3 │ [13] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3250 │ [15] top-level scope │ @ stdin:5 │ [16] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3092 │ [18] include_string │ @ ./loading.jl:3102 [inlined] │ [19] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:342 │ [20] _start() │ @ Base ./client.jl:577 │ in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/ext/ZygoteDistancesExt.jl:1 │ in expression starting at stdin:5 └ ┌ Zygote │ ERROR: LoadError: ParseError: │ # Error @ /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609:19 │ # to create a Diagonal │ tr(x), function (Δ::Number) │ # └─────────┘ ── Invalid signature in function definition │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/Zygote/55SqB/src/lib/array.jl:609 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [3] top-level scope │ @ ~/.julia/packages/Zygote/55SqB/src/Zygote.jl:40 │ [4] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3250 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3092 │ [9] include_string │ @ ./loading.jl:3102 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:342 │ [11] _start() │ @ Base ./client.jl:577 │ in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609 │ in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/Zygote.jl:1 │ in expression starting at stdin:5 └ ERROR: The following 6 packages failed to precompile: ZygoteColorsExt Failed to precompile ZygoteColorsExt [87c4bb61-4a20-546b-9b23-1b033e790125] to "/home/pkgeval/.julia/compiled/v1.14/ZygoteColorsExt/jl_v7K6aQ" (ProcessExited(1)). Meshes Failed to precompile Meshes [eacbb407-ea5a-433e-ab97-5258b1ca43fa] to "/home/pkgeval/.julia/compiled/v1.14/Meshes/jl_I4zkaC" (ProcessExited(1)). CoordRefSystems Failed to precompile CoordRefSystems [b46f11dc-f210-4604-bfba-323c1ec968cb] to "/home/pkgeval/.julia/compiled/v1.14/CoordRefSystems/jl_XB0M2M" (ProcessExited(1)). PlantGeom Failed to precompile PlantGeom [5edaa67e-25db-4eb9-bf81-05d793b2238d] to "/home/pkgeval/.julia/compiled/v1.14/PlantGeom/jl_apB26X" (ProcessExited(1)). ZygoteDistancesExt Failed to precompile ZygoteDistancesExt [c6697b10-495a-53b2-bd66-1b29a24bdf9a] to "/home/pkgeval/.julia/compiled/v1.14/ZygoteDistancesExt/jl_x4FT0A" (ProcessExited(1)). Zygote Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.14/Zygote/jl_VO6xRN" (ProcessExited(1)). Loading failed after 381.39s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using PlantGeom'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:211 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [7] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:202 PkgEval failed after 423.16s: package fails to precompile