Package evaluation to test NMF on Julia 1.14.0-DEV.1352 (749bc618c5*) started at 2025-12-09T20:33:39.463 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.53s ################################################################################ # Installation # Installing NMF... Resolving package versions... Installed Missings ──────────── v1.2.0 Installed DataAPI ───────────── v1.16.0 Installed Statistics ────────── v1.11.1 Installed LogExpFunctions ───── v0.3.29 Installed NonNegLeastSquares ── v0.4.1 Installed Preferences ───────── v1.5.0 Installed DataStructures ────── v0.19.3 Installed PrecompileTools ───── v1.3.3 Installed StatsAPI ──────────── v1.8.0 Installed IrrationalConstants ─ v0.2.6 Installed AliasTables ───────── v1.1.3 Installed RandomizedLinAlg ──── v0.1.0 Installed SortingAlgorithms ─── v1.2.2 Installed DocStringExtensions ─ v0.9.5 Installed NMF ───────────────── v1.0.3 Installed StatsBase ─────────── v0.34.9 Installed PtrArrays ─────────── v1.3.0 Installed OrderedCollections ── v1.8.1 Updating `~/.julia/environments/v1.14/Project.toml` [6ef6ca0d] + NMF v1.0.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [ffbed154] + DocStringExtensions v0.9.5 [92d709cd] + IrrationalConstants v0.2.6 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [6ef6ca0d] + NMF v1.0.3 [b7351bd1] + NonNegLeastSquares v0.4.1 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [0448d7d9] + RandomizedLinAlg v0.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 1.85s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 13.12s ################################################################################ # Testing # Testing NMF Status `/tmp/jl_SFcQF6/Project.toml` [6ef6ca0d] NMF v1.0.3 [b7351bd1] NonNegLeastSquares v0.4.1 [aea7be01] PrecompileTools v1.3.3 [0448d7d9] RandomizedLinAlg v0.1.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.9 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_SFcQF6/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [ffbed154] DocStringExtensions v0.9.5 [92d709cd] IrrationalConstants v0.2.6 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [6ef6ca0d] NMF v1.0.3 [b7351bd1] NonNegLeastSquares v0.4.1 [bac558e1] OrderedCollections v1.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [0448d7d9] RandomizedLinAlg v0.1.0 [a2af1166] SortingAlgorithms v1.2.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Testing Running tests... Running tests: alspgrad: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/alspgrad.jl:13 Expression: ≈(H, Hg, atol = eps(T) ^ (1 / 4)) Evaluated: [0.021621869968570295 0.77999458567541 … 0.013777626031359014 0.5976506631885576; 0.33436850540591045 0.4967485756522825 … 0.8114022333174782 0.5511868519369366; 0.4266755673055578 0.5808577368361727 … 0.6894413093906168 0.38469479612391266] ≈ [0.3 1.0 … 0.0 0.0; 1.0 0.3 … 0.3 1.0; 0.0 0.0 … 1.0 0.3] (atol=0.0001220703125) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [2] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:13 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [4] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:5 alspgrad: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/alspgrad.jl:20 Expression: ≈(W, Wg, atol = eps(T) ^ (1 / 4)) Evaluated: [0.35780249662138397 0.3863140068314713 0.2280172496006143; 0.6529665277551218 0.5927103802471717 0.8284001449962984; … ; 0.3425189167029423 0.9491707131034395 0.5539300163236567; 0.933738001636051 0.4544805393565513 0.9343291996457082] ≈ [0.3 1.0 0.0; 1.0 0.3 0.0; … ; 0.0 0.3 1.0; 0.0 1.0 0.3] (atol=0.0001220703125) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [2] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:20 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [4] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:5 alspgrad: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/alspgrad.jl:13 Expression: ≈(H, Hg, atol = eps(T) ^ (1 / 4)) Evaluated: Float32[0.4073311 0.23418373 … 0.008553982 0.29272103; 0.1925177 0.034073174 … 0.25278884 0.7502509; 0.14003026 0.93749017 … 0.75785846 0.31413603] ≈ Float32[0.3 1.0 … 0.0 0.0; 1.0 0.3 … 0.3 1.0; 0.0 0.0 … 1.0 0.3] (atol=0.018581361171917516) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [2] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:13 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [4] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:5 alspgrad: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/alspgrad.jl:20 Expression: ≈(W, Wg, atol = eps(T) ^ (1 / 4)) Evaluated: Float32[0.24762446 0.058857083 0.039329052; 0.83700603 0.85412484 0.85824656; … ; 0.4372067 0.32348758 0.67068607; 0.9950374 0.121028244 0.2831698] ≈ Float32[0.3 1.0 0.0; 1.0 0.3 0.0; … ; 0.0 0.3 1.0; 0.0 1.0 0.3] (atol=0.018581361171917516) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [2] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:20 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [4] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:5 interf: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/interf.jl:36 Expression: any(W .!= ret.W) Evaluated: any(Bool[0 0 0; 0 0 0; … ; 0 0 0; 0 0 0]) Stacktrace: [1] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/interf.jl:2 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/interf.jl:36 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] Test Summary: | Pass Fail Total Time All tests | 221 5 226 2m07.9s utils | 12 12 7.5s initialization | 46 46 14.2s spa | 12 12 1m14.1s multupd | 80 80 4.6s alspgrad | 4 4 8 7.5s coorddesc | 4 4 1.1s greedycd | 40 40 6.3s interf | 23 1 24 7.6s RNG of the outermost testset: Xoshiro(0x28c14c8e215aee65, 0x5c55ea22a4e54dc4, 0xbeca553d16b0be5b, 0x9b33bf174e3fdb3a, 0x3620eecaa53d8e0e) ERROR: LoadError: Some tests did not pass: 221 passed, 5 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/NMF/0XWr8/test/runtests.jl:19 Testing failed after 187.95s ERROR: LoadError: Package NMF errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3053 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2902 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 280.01s: package has test failures