Package evaluation to load MicrobiomeAnalysis on Julia 1.14.0-DEV.1352 (749bc618c5*) started at 2025-12-10T02:24:28.387


################################################################################
# Set-up
#


Set-up completed after 0.1s


################################################################################
# Installation
#

Installing MicrobiomeAnalysis...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [09137a06] + MicrobiomeAnalysis v0.4.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [7d9fca2a] + Arpack v0.5.4
  [d1d4a3ce] + BitFlags v0.1.9
  [336ed68f] + CSV v0.10.15
  [944b1d66] + CodecZlib v0.7.8
  [35d6a980] + ColorSchemes v3.31.0
  [3da002f7] + ColorTypes v0.12.1
  [c3611d14] + ColorVectorSpace v0.11.0
  [5ae59095] + Colors v0.13.1
  [34da2185] + Compat v4.18.1
  [f0e56b4a] + ConcurrentUtilities v2.5.0
  [d38c429a] + Contour v0.6.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
⌅ [85a47980] + Dictionaries v0.3.29
  [b4f34e82] + Distances v0.10.12
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  [48062228] + FilePathsBase v0.9.24
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  [1fa38f19] + Format v1.3.7
  [28b8d3ca] + GR v0.73.19
  [42e2da0e] + Grisu v1.0.2
  [cd3eb016] + HTTP v1.10.19
  [313cdc1a] + Indexing v1.1.1
  [842dd82b] + InlineStrings v1.4.5
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  [41ab1584] + InvertedIndices v1.3.1
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  [82899510] + IteratorInterfaceExtensions v1.0.0
  [1019f520] + JLFzf v0.1.11
  [692b3bcd] + JLLWrappers v1.7.1
  [682c06a0] + JSON v1.3.0
  [b964fa9f] + LaTeXStrings v1.4.0
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  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e6f89c97] + LoggingExtras v1.2.0
  [1914dd2f] + MacroTools v0.5.16
  [739be429] + MbedTLS v1.1.9
  [442fdcdd] + Measures v0.3.3
⌅ [3bd8f0ae] + Microbiome v0.9.4
  [09137a06] + MicrobiomeAnalysis v0.4.0
  [e1d29d7a] + Missings v1.2.0
  [c9137f73] + MultiAssayExperiments v0.2.0
⌅ [6f286f6a] + MultivariateStats v0.9.1
  [77ba4419] + NaNMath v1.1.3
  [4d8831e6] + OpenSSL v1.6.1
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  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [08abe8d2] + PrettyTables v3.1.2
  [e0db7c4e] + ReTest v0.3.4
  [3cdcf5f2] + RecipesBase v1.3.4
  [01d81517] + RecipesPipeline v0.6.12
  [189a3867] + Reexport v1.2.2
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        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 6.42s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 12.46s



################################################################################
# Loading
#

Loading MicrobiomeAnalysis...
ERROR: LoadError: ParseError:
# Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18
function zip_missing(::Tuple{}, longer)
    map(function (second_one)
#                └──────────┘ ── Invalid signature in function definition
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
   @ Base ./loading.jl:3250
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:3092
 [7] include_string
   @ ./loading.jl:3102 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:342
 [9] _start()
   @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144
in expression starting at stdin:5
WARNING: Imported binding Test.pop_testset was undeclared at import time during import to Testset.
WARNING: Imported binding Test.push_testset was undeclared at import time during import to Testset.
┌ Error: Precompilation failed, this is the captured stdout (114 chars):
└ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:36
                                   Pass  |  Time / Compile / GC |   Alloc   ΔRSS |
ReTest._ReTestPrecompileTests:

┌ Error: And this is the captured stderr (0 chars):
└ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:39

ERROR: LoadError: TaskFailedException
Stacktrace:
  [1] #wait#588
    @ ./task.jl:363 [inlined]
  [2] wait
    @ ./task.jl:360 [inlined]
  [3] retest(::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}}; dry::Bool, stats::Bool, shuffle::Bool, group::Bool, verbose::Bool, recursive::Bool, id::Nothing, strict::Bool, dup::Bool, static::Nothing, load::Bool, seed::Bool, marks::Bool, tag::Vector{Symbol}, spin::Bool, clear::Bool)
    @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1186
  [4] kwcall(::@NamedTuple{recursive::Bool, stats::Bool, spin::Bool}, ::typeof(InlineTest.retest), ::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}})
    @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:750
  [5] #137
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:26 [inlined]
  [6] redirect_stdio(f::ReTest.var"#137#138"; stdin::Nothing, stderr::Pipe, stdout::Pipe)
    @ Base ./stream.jl:1449
  [7] kwcall(::@NamedTuple{stderr::Pipe, stdout::Pipe}, ::typeof(redirect_stdio), f::Function)
    @ Base ./stream.jl:1412
  [8] macro expansion
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:25 [inlined]
  [9] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [10] macro expansion
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:23 [inlined]
 [11] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined]
 [12] top-level scope
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:118
 [13] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [14] top-level scope
    @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1751
 [15] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [17] top-level scope
    @ stdin:5
 [18] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [20] include_string
    @ ./loading.jl:3102 [inlined]
 [21] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [22] _start()
    @ Base ./client.jl:577

    nested task error: TaskFailedException
    
        nested task error: UndefVarError: `push_testset` not defined in `ReTest.Testset`
        Suggestion: this global was defined as `Test.push_testset` but not assigned a value.
        Stacktrace:
          [1] top-level scope
            @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:517
          [2] macro expansion
            @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:12 [inlined]
          [3] macro expansion
            @ ~/.julia/packages/ReTest/3Ikse/src/testset.jl:517 [inlined]
          [4] eval(m::Module, e::Any)
            @ Core ./boot.jl:489
          [5] (::ReTest.var"#110#111"{ReTest.Testset.Format})(mod::Module, ts::ReTest.TestsetExpr, pat::ReTest.And, chan::@NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing})
            @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1154
          [6] #local_remotecall_thunk##0
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:425 [inlined]
          [7] run_work_thunk(thunk::Distributed.var"#local_remotecall_thunk##0#local_remotecall_thunk##1"{ReTest.var"#110#111"{ReTest.Testset.Format}, Tuple{Module, ReTest.TestsetExpr, ReTest.And, @NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing}}, @Kwargs{}}, print_error::Bool)
            @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:70
          [8] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{})
            @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:450
          [9] remotecall_fetch
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:449 [inlined]
         [10] remotecall_fetch
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:492 [inlined]
         [11] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
            @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151
        Stacktrace:
         [1] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{})
           @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:451
         [2] remotecall_fetch
           @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:449 [inlined]
         [3] remotecall_fetch
           @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:492 [inlined]
         [4] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
           @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151
    Stacktrace:
     [1] sync_end(c::Channel{Any})
       @ Base ./task.jl:630
     [2] macro expansion
       @ ./task.jl:663 [inlined]
     [3] (::ReTest.var"#96#97"{Bool, ReTest.Testset.Format, Bool, Base.RefValue{Int64}, Bool, ReTest.var"#take_latest!#91", Nothing, ReentrantLock, Bool, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Base.RefValue{Exception}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
       @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1104
in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/precompile.jl:19
in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("41fe7b60-77ed-43a1-b4f0-825fd5a5650d"), "Unzip") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
    @ Base ./module.jl:111
 [10] top-level scope
    @ ~/.julia/packages/Plots/ywg93/src/Plots.jl:43
 [11] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [12] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [13] top-level scope
    @ stdin:5
 [14] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [16] include_string
    @ ./loading.jl:3102 [inlined]
 [17] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [18] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Plots/ywg93/src/Plots.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("e0db7c4e-2690-44b9-bad6-7687da720f89"), "ReTest") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/Microbiome/BvZqT/src/Microbiome.jl:74
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [18] include_string
    @ ./loading.jl:3102 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Microbiome/BvZqT/src/Microbiome.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("91a5bcdd-55d7-5caf-9e0b-520d859cae80"), "Plots") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base ./module.jl:101
 [11] top-level scope
    @ ~/.julia/packages/MicrobiomeAnalysis/fZGRE/src/MicrobiomeAnalysis.jl:8
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [14] top-level scope
    @ stdin:5
 [15] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [17] include_string
    @ ./loading.jl:3102 [inlined]
 [18] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [19] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/MicrobiomeAnalysis/fZGRE/src/MicrobiomeAnalysis.jl:1
in expression starting at stdin:5

  5 dependencies had output during precompilation:
┌ Unzip
│  ERROR: LoadError: ParseError:
│  # Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18
│  function zip_missing(::Tuple{}, longer)
│      map(function (second_one)
│  #                └──────────┘ ── Invalid signature in function definition
│  Stacktrace:
│   [1] top-level scope
│     @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144
│   [2] include(mod::Module, _path::String)
│     @ Base ./Base.jl:309
│   [3] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│     @ Base ./loading.jl:3250
│   [4] top-level scope
│     @ stdin:5
│   [5] eval(m::Module, e::Any)
│     @ Core ./boot.jl:489
│   [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│     @ Base ./loading.jl:3092
│   [7] include_string
│     @ ./loading.jl:3102 [inlined]
│   [8] exec_options(opts::Base.JLOptions)
│     @ Base ./client.jl:342
│   [9] _start()
│     @ Base ./client.jl:577
│  in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144
│  in expression starting at stdin:5
└  
┌ Plots
│  ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("41fe7b60-77ed-43a1-b4f0-825fd5a5650d"), "Unzip") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
│  Stacktrace:
│    [1] error(s::String)
│      @ Base ./error.jl:44
│    [2] __require_prelocked(pkg::Base.PkgId, env::String)
│      @ Base ./loading.jl:2813
│    [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
│      @ Base ./loading.jl:2665
│    [4] macro expansion
│      @ ./loading.jl:2593 [inlined]
│    [5] macro expansion
│      @ ./lock.jl:376 [inlined]
│    [6] __require(into::Module, mod::Symbol)
│      @ Base ./loading.jl:2557
│    [7] require
│      @ ./loading.jl:2533 [inlined]
│    [8] eval_import_path
│      @ ./module.jl:36 [inlined]
│    [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
│      @ Base ./module.jl:111
│   [10] top-level scope
│      @ ~/.julia/packages/Plots/ywg93/src/Plots.jl:43
│   [11] include(mod::Module, _path::String)
│      @ Base ./Base.jl:309
│   [12] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base ./loading.jl:3250
│   [13] top-level scope
│      @ stdin:5
│   [14] eval(m::Module, e::Any)
│      @ Core ./boot.jl:489
│   [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base ./loading.jl:3092
│   [16] include_string
│      @ ./loading.jl:3102 [inlined]
│   [17] exec_options(opts::Base.JLOptions)
│      @ Base ./client.jl:342
│   [18] _start()
│      @ Base ./client.jl:577
│  in expression starting at /home/pkgeval/.julia/packages/Plots/ywg93/src/Plots.jl:1
│  in expression starting at stdin:5
└  
┌ ReTest
│  WARNING: Imported binding Test.pop_testset was undeclared at import time during import to Testset.
│  WARNING: Imported binding Test.push_testset was undeclared at import time during import to Testset.
│  ┌ Error: Precompilation failed, this is the captured stdout (114 chars):
│  └ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:36
│                                     Pass  |  Time / Compile / GC |   Alloc   ΔRSS |
│  ReTest._ReTestPrecompileTests:
│  
│  ┌ Error: And this is the captured stderr (0 chars):
│  └ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:39
│  
│  ERROR: LoadError: TaskFailedException
│  Stacktrace:
│    [1] #wait#588
│      @ ./task.jl:363 [inlined]
│    [2] wait
│      @ ./task.jl:360 [inlined]
│    [3] retest(::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}}; dry::Bool, stats::Bool, shuffle::Bool, group::Bool, verbose::Bool, recursive::Bool, id::Nothing, strict::Bool, dup::Bool, static::Nothing, load::Bool, seed::Bool, marks::Bool, tag::Vector{Symbol}, spin::Bool, clear::Bool)
│      @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1186
│    [4] kwcall(::@NamedTuple{recursive::Bool, stats::Bool, spin::Bool}, ::typeof(InlineTest.retest), ::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}})
│      @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:750
│    [5] #137
│      @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:26 [inlined]
│    [6] redirect_stdio(f::ReTest.var"#137#138"; stdin::Nothing, stderr::Pipe, stdout::Pipe)
│      @ Base ./stream.jl:1449
│    [7] kwcall(::@NamedTuple{stderr::Pipe, stdout::Pipe}, ::typeof(redirect_stdio), f::Function)
│      @ Base ./stream.jl:1412
│    [8] macro expansion
│      @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:25 [inlined]
│    [9] macro expansion
│      @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
│   [10] macro expansion
│      @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:23 [inlined]
│   [11] macro expansion
│      @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined]
│   [12] top-level scope
│      @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:118
│   [13] include(mapexpr::Function, mod::Module, _path::String)
│      @ Base ./Base.jl:310
│   [14] top-level scope
│      @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1751
│   [15] include(mod::Module, _path::String)
│      @ Base ./Base.jl:309
│   [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base ./loading.jl:3250
│   [17] top-level scope
│      @ stdin:5
│   [18] eval(m::Module, e::Any)
│      @ Core ./boot.jl:489
│   [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base ./loading.jl:3092
│   [20] include_string
│      @ ./loading.jl:3102 [inlined]
│   [21] exec_options(opts::Base.JLOptions)
│      @ Base ./client.jl:342
│   [22] _start()
│      @ Base ./client.jl:577
│  
│      nested task error: TaskFailedException
│      
│          nested task error: UndefVarError: `push_testset` not defined in `ReTest.Testset`
│          Suggestion: this global was defined as `Test.push_testset` but not assigned a value.
│          Stacktrace:
│            [1] top-level scope
│              @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:517
│            [2] macro expansion
│              @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:12 [inlined]
│            [3] macro expansion
│              @ ~/.julia/packages/ReTest/3Ikse/src/testset.jl:517 [inlined]
│            [4] eval(m::Module, e::Any)
│              @ Core ./boot.jl:489
│            [5] (::ReTest.var"#110#111"{ReTest.Testset.Format})(mod::Module, ts::ReTest.TestsetExpr, pat::ReTest.And, chan::@NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing})
│              @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1154
│            [6] #local_remotecall_thunk##0
│              @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:425 [inlined]
│            [7] run_work_thunk(thunk::Distributed.var"#local_remotecall_thunk##0#local_remotecall_thunk##1"{ReTest.var"#110#111"{ReTest.Testset.Format}, Tuple{Module, ReTest.TestsetExpr, ReTest.And, @NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing}}, @Kwargs{}}, print_error::Bool)
│              @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:70
│            [8] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{})
│              @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:450
│            [9] remotecall_fetch
│              @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:449 [inlined]
│           [10] remotecall_fetch
│              @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:492 [inlined]
│           [11] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
│              @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151
│          Stacktrace:
│           [1] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{})
│             @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:451
│           [2] remotecall_fetch
│             @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:449 [inlined]
│           [3] remotecall_fetch
│             @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:492 [inlined]
│           [4] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
│             @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151
│      Stacktrace:
│       [1] sync_end(c::Channel{Any})
│         @ Base ./task.jl:630
│       [2] macro expansion
│         @ ./task.jl:663 [inlined]
│       [3] (::ReTest.var"#96#97"{Bool, ReTest.Testset.Format, Bool, Base.RefValue{Int64}, Bool, ReTest.var"#take_latest!#91", Nothing, ReentrantLock, Bool, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Base.RefValue{Exception}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
│         @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1104
│  in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/precompile.jl:19
│  in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1
│  in expression starting at stdin:5
└  
┌ Microbiome
│  ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("e0db7c4e-2690-44b9-bad6-7687da720f89"), "ReTest") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
│  Stacktrace:
│    [1] error(s::String)
│      @ Base ./error.jl:44
│    [2] __require_prelocked(pkg::Base.PkgId, env::String)
│      @ Base ./loading.jl:2813
│    [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
│      @ Base ./loading.jl:2665
│    [4] macro expansion
│      @ ./loading.jl:2593 [inlined]
│    [5] macro expansion
│      @ ./lock.jl:376 [inlined]
│    [6] __require(into::Module, mod::Symbol)
│      @ Base ./loading.jl:2557
│    [7] require
│      @ ./loading.jl:2533 [inlined]
│    [8] eval_import_path
│      @ ./module.jl:36 [inlined]
│    [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
│      @ Base ./module.jl:60
│   [10] _eval_using
│      @ ./module.jl:137 [inlined]
│   [11] _eval_using(to::Module, path::Expr)
│      @ Base ./module.jl:137
│   [12] top-level scope
│      @ ~/.julia/packages/Microbiome/BvZqT/src/Microbiome.jl:74
│   [13] include(mod::Module, _path::String)
│      @ Base ./Base.jl:309
│   [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base ./loading.jl:3250
│   [15] top-level scope
│      @ stdin:5
│   [16] eval(m::Module, e::Any)
│      @ Core ./boot.jl:489
│   [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base ./loading.jl:3092
│   [18] include_string
│      @ ./loading.jl:3102 [inlined]
│   [19] exec_options(opts::Base.JLOptions)
│      @ Base ./client.jl:342
│   [20] _start()
│      @ Base ./client.jl:577
│  in expression starting at /home/pkgeval/.julia/packages/Microbiome/BvZqT/src/Microbiome.jl:1
│  in expression starting at stdin:5
└  
┌ MicrobiomeAnalysis
│  [Output was shown above]
└  
ERROR: The following 5 packages failed to precompile:

Unzip 
Failed to precompile Unzip [41fe7b60-77ed-43a1-b4f0-825fd5a5650d] to "/home/pkgeval/.julia/compiled/v1.14/Unzip/jl_rbvG5w" (ProcessExited(1)).

Plots 
Failed to precompile Plots [91a5bcdd-55d7-5caf-9e0b-520d859cae80] to "/home/pkgeval/.julia/compiled/v1.14/Plots/jl_YNZF3M" (ProcessExited(1)).

ReTest 
Failed to precompile ReTest [e0db7c4e-2690-44b9-bad6-7687da720f89] to "/home/pkgeval/.julia/compiled/v1.14/ReTest/jl_iFXhno" (ProcessExited(1)).

Microbiome 
Failed to precompile Microbiome [3bd8f0ae-a0f2-5238-a5af-e1b399a4940c] to "/home/pkgeval/.julia/compiled/v1.14/Microbiome/jl_C4mtdf" (ProcessExited(1)).

MicrobiomeAnalysis 
Failed to precompile MicrobiomeAnalysis [09137a06-29c6-4e66-9476-ab7e4b8c7492] to "/home/pkgeval/.julia/compiled/v1.14/MicrobiomeAnalysis/jl_w18tRX" (ProcessExited(1)).


Loading failed after 261.19s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using MicrobiomeAnalysis'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:211
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:202

PkgEval failed after 298.73s: package fails to precompile