Package evaluation to test MRCFile on Julia 1.14.0-DEV.1352 (749bc618c5*) started at 2025-12-09T20:04:20.673 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.33s ################################################################################ # Installation # Installing MRCFile... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [c18c01d3] + MRCFile v0.1.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [692b3bcd] + JLLWrappers v1.7.1 [c18c01d3] + MRCFile v0.1.4 [21216c6a] + Preferences v1.5.0 [10745b16] + Statistics v1.11.1 [3bb67fe8] + TranscodingStreams v0.11.3 [6e34b625] + Bzip2_jll v1.0.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 1.75s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 13.26s ################################################################################ # Testing # Testing MRCFile Status `/tmp/jl_HyDeRq/Project.toml` [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [992eb4ea] CondaPkg v0.2.33 [c18c01d3] MRCFile v0.1.4 [6099a3de] PythonCall v0.9.30 [10745b16] Statistics v1.11.1 [3bb67fe8] TranscodingStreams v0.11.3 [ade2ca70] Dates v1.11.0 [a63ad114] Mmap v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_HyDeRq/Manifest.toml` [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [992eb4ea] CondaPkg v0.2.33 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [c18c01d3] MRCFile v0.1.4 [1914dd2f] MacroTools v0.5.16 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [6099a3de] PythonCall v0.9.30 [6c6a2e73] Scratch v1.3.0 [10745b16] Statistics v1.11.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [e17b2a0c] UnsafePointers v1.0.0 [6e34b625] Bzip2_jll v1.0.9+0 [ffd25f8a] XZ_jll v5.8.1+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for MRCFile [c18c01d3-0ab9-49c3-bd2d-8f2e64a2b7a5] │ exception = Required dependency Base.PkgId(Base.UUID("10745b16-79ce-11e8-11f9-7d13ad32a3b2"), "Statistics") failed to load from a cache file. └ @ Base loading.jl:2891 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for PythonCall [6099a3de-0909-46bc-b1f4-468b9a2dfc0d] │ exception = Required dependency Base.PkgId(Base.UUID("1914dd2f-81c6-5fcd-8719-6d5c9610ff09"), "MacroTools") failed to load from a cache file. └ @ Base loading.jl:2891 MRCFile.jl: Error During Test at /home/pkgeval/.julia/packages/MRCFile/YMWPZ/test/runtests.jl:4 Got exception outside of a @test LoadError: InitError: UndefVarError: `manifest_uuid_path` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base_compiler.jl:50 [2] _resolve_top_env(load_path::Any) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:10 [3] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool) @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:823 [4] resolve() @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/resolve.jl:796 [5] envdir() @ CondaPkg ~/.julia/packages/CondaPkg/0UqYV/src/env.jl:70 [6] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/wkBj7/src/C/context.jl:135 [7] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/wkBj7/src/C/C.jl:26 [8] include(mod::Module, _path::String) @ Base ./Base.jl:309 [9] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2914 [10] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2665 [11] macro expansion @ ./loading.jl:2593 [inlined] [12] macro expansion @ ./lock.jl:376 [inlined] [13] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2557 [14] require @ ./loading.jl:2533 [inlined] [15] eval_import_path @ ./module.jl:36 [inlined] [16] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [17] _eval_using @ ./module.jl:137 [inlined] [18] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [19] top-level scope @ ~/.julia/packages/MRCFile/YMWPZ/test/consistency.jl:3 [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ ~/.julia/packages/MRCFile/YMWPZ/test/runtests.jl:5 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [23] macro expansion @ ~/.julia/packages/MRCFile/YMWPZ/test/runtests.jl:9 [inlined] [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:577 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/PythonCall/wkBj7/src/PythonCall.jl:1 in expression starting at /home/pkgeval/.julia/packages/MRCFile/YMWPZ/test/consistency.jl:3 Test Summary: | Pass Error Total Time MRCFile.jl | 271 1 272 1m26.7s hostbyteorder | 1 1 0.0s machstfrombyteorder | 3 3 0.1s byteorderfrommachst | 5 5 0.4s bswaptoh | 5 5 0.1s bswapfromh | 5 5 0.0s maybeswap | 5 5 0.1s padtruncto! | 4 4 0.1s compression: gz | 4 4 2.0s compression: bz2 | 4 4 1.0s compression: xz | 4 4 1.1s compression: none | 4 4 0.3s MRCHeader | 40 40 1.0s show(::MRCHeader) | 1 1 0.7s setproperty!(::MRCHeader) | 2 2 0.0s copyto!(::MRCHeader, ::MRCHeader) | 3 3 0.1s sizeoffield(exttyp, String) | 1 1 0.0s sizeoffield(map, String) | 1 1 0.0s sizeoffield(label, Vector{String}) | 1 1 0.0s sizeoffield(testfloat, Float32) | 1 1 0.0s sizeoffield(testint, Int32) | 1 1 0.0s sizeoffield(testuintbool, NTuple{8, UInt8}) | 1 1 0.0s entrytobytes | 8 8 1.5s fieldoffsets | 1 1 0.3s size(::MRCHeader) | 1 1 0.0s length(::MRCHeader) | 1 1 0.0s cellangles(::MRCHeader) | 1 1 0.1s cellangles!(::MRCHeader) | 2 2 0.0s cellsize(::MRCHeader) | 1 1 0.1s cellsize!(::MRCHeader) | 2 2 0.0s gridsize(::MRCHeader) | 1 1 0.1s gridsize!(::MRCHeader) | 2 2 0.0s origin(::MRCHeader) | 1 1 0.1s origin!(::MRCHeader) | 2 2 0.0s start(::MRCHeader) | 1 1 0.1s start!(::MRCHeader) | 2 2 0.0s voxelsize | 4 4 0.2s voxelsize! | 4 4 0.1s read | 74 74 3.0s read_mmap | 1 1 0.4s write | 11 11 2.4s MRCData | 45 45 0.4s updateheader!(d::MRCData; statistics=true) | 10 10 0.5s RNG of the outermost testset: Random.Xoshiro(0x664750fcb17043dd, 0x3061538f2293c4f7, 0x0023b0841c61d55c, 0xd33859caf45b13d7, 0xbea832cb5592486f) ERROR: LoadError: Some tests did not pass: 271 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MRCFile/YMWPZ/test/runtests.jl:4 Testing failed after 105.21s ERROR: LoadError: Package MRCFile errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3053 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2902 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 146.67s: package tests unexpectedly errored