Package evaluation to test MEDYANSimRunner on Julia 1.14.0-DEV.1352 (749bc618c5*) started at 2025-12-09T21:19:17.264 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.47s ################################################################################ # Installation # Installing MEDYANSimRunner... Resolving package versions... Installed MEDYANSimRunner ─ v0.6.2 Updating `~/.julia/environments/v1.14/Project.toml` [b58a3b99] + MEDYANSimRunner v0.6.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [dce04be8] + ArgCheck v2.5.0 [0b6fb165] + ChunkCodecCore v1.0.0 [c6a955be] + ChunkCodecLibBlosc v0.3.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [ab62b9b5] + DeepDiffs v1.2.0 [0c81fc1b] + InputBuffers v1.1.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [e6f89c97] + LoggingExtras v1.2.0 [b58a3b99] + MEDYANSimRunner v0.6.2 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [d423b6e5] + SmallZarrGroups v0.8.12 [09ab397b] + StructArrays v0.7.2 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [49080126] + ZipArchives v2.6.0 [402d8ed9] + ZoneProfilers v0.1.2 [0b7ba130] + Blosc_jll v1.21.7+0 [5ced341a] + Lz4_jll v1.10.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 Installation completed after 5.22s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 13.92s ################################################################################ # Testing # Testing MEDYANSimRunner Status `/tmp/jl_YtUKyJ/Project.toml` [e6f89c97] LoggingExtras v1.2.0 [b58a3b99] MEDYANSimRunner v0.6.2 [bac558e1] OrderedCollections v1.8.1 [d423b6e5] SmallZarrGroups v0.8.12 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_YtUKyJ/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [dce04be8] ArgCheck v2.5.0 [0b6fb165] ChunkCodecCore v1.0.0 [c6a955be] ChunkCodecLibBlosc v0.3.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [ab62b9b5] DeepDiffs v1.2.0 [0c81fc1b] InputBuffers v1.1.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [e6f89c97] LoggingExtras v1.2.0 [b58a3b99] MEDYANSimRunner v0.6.2 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [d423b6e5] SmallZarrGroups v0.8.12 [09ab397b] StructArrays v0.7.2 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [49080126] ZipArchives v2.6.0 [402d8ed9] ZoneProfilers v0.1.2 [0b7ba130] Blosc_jll v1.21.7+0 [5ced341a] Lz4_jll v1.10.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 Testing Running tests... ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for MEDYANSimRunner [b58a3b99-22e3-44d1-b5ea-258f082a6fe8] │ exception = Required dependency Base.PkgId(Base.UUID("856f2bd8-1eba-4b0a-8007-ebc267875bd4"), "StructTypes") failed to load from a cache file. └ @ Base loading.jl:2891 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for SmallZarrGroups [d423b6e5-1c84-4ae2-8d2d-b903aee15ac7] │ exception = Required dependency Base.PkgId(Base.UUID("856f2bd8-1eba-4b0a-8007-ebc267875bd4"), "StructTypes") failed to load from a cache file. └ @ Base loading.jl:2891 Test Summary: | Pass Total Time arg parsing | 31 31 2.2s Test Summary: | Pass Total Time write_traj_file unit tests | 17 17 3.4s Test Summary: | Pass Total Time run example | 2 2 2m44.6s Testing MEDYANSimRunner tests passed Testing completed after 150.1s PkgEval succeeded after 244.36s