Package evaluation to test EmpiricalPotentials on Julia 1.14.0-DEV.1352 (749bc618c5*) started at 2025-12-09T22:36:44.755


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.9s


################################################################################
# Installation
#

Installing EmpiricalPotentials...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [38527215] + EmpiricalPotentials v0.2.4
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [7d9f7c33] + Accessors v0.1.43
  [79e6a3ab] + Adapt v4.4.0
  [dce04be8] + ArgCheck v2.5.0
  [a963bdd2] + AtomsBase v0.5.2
  [a3e0e189] + AtomsCalculators v0.2.3
  [9855a07e] + AtomsCalculatorsUtilities v0.1.8
  [198e06fe] + BangBang v0.4.6
  [9718e550] + Baselet v0.1.1
  [8ce10254] + Bumper v0.7.1
  [ae650224] + ChunkSplitters v3.1.2
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [a33af91c] + CompositionsBase v0.1.2
  [187b0558] + ConstructionBase v1.6.0
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [244e2a9f] + DefineSingletons v0.1.2
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [ffbed154] + DocStringExtensions v0.9.5
  [38527215] + EmpiricalPotentials v0.2.4
  [e189563c] + ExternalDocstrings v0.1.1
  [41a02a25] + Folds v0.2.10
⌅ [f6369f11] + ForwardDiff v0.10.39
  [22cec73e] + InitialValues v0.3.1
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.6
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.16
  [128add7d] + MicroCollections v0.2.0
  [77ba4419] + NaNMath v1.1.3
  [2fcf5ba9] + NeighbourLists v0.5.10
  [bac558e1] + OrderedCollections v1.8.1
  [7b2266bf] + PeriodicTable v1.2.1
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [42d2dcc6] + Referenceables v0.1.3
  [ae029012] + Requires v1.3.1
  [efcf1570] + Setfield v1.1.2
  [276daf66] + SpecialFunctions v2.6.1
  [171d559e] + SplittablesBase v0.1.15
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [24d252fe] + ThreadedScans v0.1.0
  [28d57a85] + Transducers v0.4.85
  [1986cc42] + Unitful v1.27.0
  [a7773ee8] + UnitfulAtomic v1.0.0
  [c4a57d5a] + UnsafeArrays v1.0.8
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.87s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 13.68s



################################################################################
# Testing
#

     Testing EmpiricalPotentials
      Status `/tmp/jl_HndKrX/Project.toml`
  [a963bdd2] AtomsBase v0.5.2
  [f5cc8831] AtomsBuilder v0.2.2
  [a3e0e189] AtomsCalculators v0.2.3
  [9855a07e] AtomsCalculatorsUtilities v0.1.8
  [38527215] EmpiricalPotentials v0.2.4
  [6a86dc24] FiniteDiff v2.29.0
⌅ [f6369f11] ForwardDiff v0.10.39
⌅ [682c06a0] JSON v0.21.4
  [2fcf5ba9] NeighbourLists v0.5.10
  [90137ffa] StaticArrays v1.9.15
  [1986cc42] Unitful v1.27.0
  [37e2e46d] LinearAlgebra v1.13.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_HndKrX/Manifest.toml`
  [7d9f7c33] Accessors v0.1.43
  [79e6a3ab] Adapt v4.4.0
  [dce04be8] ArgCheck v2.5.0
  [4fba245c] ArrayInterface v7.22.0
  [a963bdd2] AtomsBase v0.5.2
  [f5cc8831] AtomsBuilder v0.2.2
  [a3e0e189] AtomsCalculators v0.2.3
  [9855a07e] AtomsCalculatorsUtilities v0.1.8
  [198e06fe] BangBang v0.4.6
  [9718e550] Baselet v0.1.1
  [8ce10254] Bumper v0.7.1
  [ae650224] ChunkSplitters v3.1.2
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [a33af91c] CompositionsBase v0.1.2
  [187b0558] ConstructionBase v1.6.0
  [9a962f9c] DataAPI v1.16.0
  [e2d170a0] DataValueInterfaces v1.0.0
  [244e2a9f] DefineSingletons v0.1.2
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [ffbed154] DocStringExtensions v0.9.5
  [38527215] EmpiricalPotentials v0.2.4
  [e189563c] ExternalDocstrings v0.1.1
  [6a86dc24] FiniteDiff v2.29.0
  [41a02a25] Folds v0.2.10
⌅ [f6369f11] ForwardDiff v0.10.39
  [22cec73e] InitialValues v0.3.1
  [3587e190] InverseFunctions v0.1.17
  [92d709cd] IrrationalConstants v0.2.6
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.1
⌅ [682c06a0] JSON v0.21.4
  [2ab3a3ac] LogExpFunctions v0.3.29
  [1914dd2f] MacroTools v0.5.16
  [128add7d] MicroCollections v0.2.0
  [77ba4419] NaNMath v1.1.3
  [2fcf5ba9] NeighbourLists v0.5.10
  [bac558e1] OrderedCollections v1.8.1
  [69de0a69] Parsers v2.8.3
  [7b2266bf] PeriodicTable v1.2.1
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [42d2dcc6] Referenceables v0.1.3
  [ae029012] Requires v1.3.1
  [efcf1570] Setfield v1.1.2
  [276daf66] SpecialFunctions v2.6.1
  [171d559e] SplittablesBase v0.1.15
  [90137ffa] StaticArrays v1.9.15
  [1e83bf80] StaticArraysCore v1.4.4
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [24d252fe] ThreadedScans v0.1.0
  [28d57a85] Transducers v0.4.85
  [1986cc42] Unitful v1.27.0
  [a7773ee8] UnitfulAtomic v1.0.0
  [c4a57d5a] UnsafeArrays v1.0.8
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for EmpiricalPotentials [38527215-9240-4c91-a638-d4250620c9e2]
│   exception = Required dependency Base.PkgId(Base.UUID("e2d170a0-9d28-54be-80f0-106bbe20a464"), "DataValueInterfaces") failed to load from a cache file.
└ @ Base loading.jl:2891
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for AtomsCalculatorsUtilities [9855a07e-8816-4d1b-ac92-859c17475477]
│   exception = Required dependency Base.PkgId(Base.UUID("e2d170a0-9d28-54be-80f0-106bbe20a464"), "DataValueInterfaces") failed to load from a cache file.
└ @ Base loading.jl:2891
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for Folds [41a02a25-b8f0-4f67-bc48-60067656b558]
│   exception = Required dependency Base.PkgId(Base.UUID("e2d170a0-9d28-54be-80f0-106bbe20a464"), "DataValueInterfaces") failed to load from a cache file.
└ @ Base loading.jl:2891
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for Transducers [28d57a85-8fef-5791-bfe6-a80928e7c999]
│   exception = Required dependency Base.PkgId(Base.UUID("e2d170a0-9d28-54be-80f0-106bbe20a464"), "DataValueInterfaces") failed to load from a cache file.
└ @ Base loading.jl:2891
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("28d57a85-8fef-5791-bfe6-a80928e7c999"), "Transducers") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
    @ Base ./module.jl:111
 [10] top-level scope
    @ ~/.julia/packages/Transducers/PqRuk/ext/TransducersAdaptExt.jl:3
 [11] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [12] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [13] top-level scope
    @ stdin:5
 [14] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [16] include_string
    @ ./loading.jl:3102 [inlined]
 [17] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [18] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Transducers/PqRuk/ext/TransducersAdaptExt.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ Transducers → TransducersAdaptExt
│  [Output was shown above]
└  
┌ Error: Error during loading of extension TransducersAdaptExt of Transducers, use `Base.retry_load_extensions()` to retry.
│   exception =
│    1-element ExceptionStack:
│    The following 1 package failed to precompile:
│    
│    TransducersAdaptExt 
│    Failed to precompile TransducersAdaptExt [174f4ccc-8f69-5297-84ee-938c5d7a1db8] to "/home/pkgeval/.julia/compiled/v1.14/TransducersAdaptExt/jl_YKoKmD" (ProcessExited(1)).
│    
└ @ Base loading.jl:1721
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("28d57a85-8fef-5791-bfe6-a80928e7c999"), "Transducers") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
    @ Base ./module.jl:111
 [10] top-level scope
    @ ~/.julia/packages/Transducers/PqRuk/ext/TransducersAdaptExt.jl:3
 [11] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [12] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [13] top-level scope
    @ stdin:5
 [14] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [16] include_string
    @ ./loading.jl:3102 [inlined]
 [17] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [18] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Transducers/PqRuk/ext/TransducersAdaptExt.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("28d57a85-8fef-5791-bfe6-a80928e7c999"), "Transducers") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/Transducers/PqRuk/ext/TransducersReferenceablesExt.jl:3
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [18] include_string
    @ ./loading.jl:3102 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Transducers/PqRuk/ext/TransducersReferenceablesExt.jl:1
in expression starting at stdin:5

  2 dependencies had output during precompilation:
┌ Transducers → TransducersAdaptExt
│  ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("28d57a85-8fef-5791-bfe6-a80928e7c999"), "Transducers") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0)
│  Stacktrace:
│    [1] error(s::String)
│      @ Base ./error.jl:44
│    [2] __require_prelocked(pkg::Base.PkgId, env::String)
│      @ Base ./loading.jl:2813
│    [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
│      @ Base ./loading.jl:2665
│    [4] macro expansion
│      @ ./loading.jl:2593 [inlined]
│    [5] macro expansion
│      @ ./lock.jl:376 [inlined]
│    [6] __require(into::Module, mod::Symbol)
│      @ Base ./loading.jl:2557
│    [7] require
│      @ ./loading.jl:2533 [inlined]
│    [8] eval_import_path
│      @ ./module.jl:36 [inlined]
│    [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
│      @ Base ./module.jl:111
│   [10] top-level scope
│      @ ~/.julia/packages/Transducers/PqRuk/ext/TransducersAdaptExt.jl:3
│   [11] include(mod::Module, _path::String)
│      @ Base ./Base.jl:309
│   [12] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base ./loading.jl:3250
│   [13] top-level scope
│      @ stdin:5
│   [14] eval(m::Module, e::Any)
│      @ Core ./boot.jl:489
│   [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base ./loading.jl:3092
│   [16] include_string
│      @ ./loading.jl:3102 [inlined]
│   [17] exec_options(opts::Base.JLOptions)
│      @ Base ./client.jl:342
│   [18] _start()
│      @ Base ./client.jl:577
│  in expression starting at /home/pkgeval/.julia/packages/Transducers/PqRuk/ext/TransducersAdaptExt.jl:1
│  in expression starting at stdin:5
└  
┌ Transducers → TransducersReferenceablesExt
│  [Output was shown above]
└  
┌ Error: Error during loading of extension TransducersReferenceablesExt of Transducers, use `Base.retry_load_extensions()` to retry.
│   exception =
│    1-element ExceptionStack:
│    The following 2 packages failed to precompile:
│    
│    TransducersAdaptExt 
│    Failed to precompile TransducersAdaptExt [174f4ccc-8f69-5297-84ee-938c5d7a1db8] to "/home/pkgeval/.julia/compiled/v1.14/TransducersAdaptExt/jl_gFX9Oe" (ProcessExited(1)).
│    
│    TransducersReferenceablesExt 
│    Failed to precompile TransducersReferenceablesExt [af4a4326-d5ae-52ef-a8a9-da2e5626d62f] to "/home/pkgeval/.julia/compiled/v1.14/TransducersReferenceablesExt/jl_mkIKbg" (ProcessExited(1)).
│    
└ @ Base loading.jl:1721
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for AtomsBuilder [f5cc8831-eeb7-4288-8d9f-d6c1ddb77004]
│   exception = Required dependency Base.PkgId(Base.UUID("682c06a0-de6a-54ab-a142-c8b1cf79cde6"), "JSON") failed to load from a cache file.
└ @ Base loading.jl:2891
[ Info: LJ Finite difference calculator test
[ Info: Morse Finite difference calculator test
[ Info: ZBL Finite difference calculator test
[ Info: SW Finite difference calculator test
Test Summary:          | Pass  Total     Time
EmpiricalPotentials.jl |  213    213  1m42.5s
     Testing EmpiricalPotentials tests passed 

Testing completed after 323.49s

PkgEval succeeded after 371.77s