Package evaluation to load CherenkovDeconvolution on Julia 1.14.0-DEV.1352 (749bc618c5*) started at 2025-12-10T00:02:48.530


################################################################################
# Set-up
#


Set-up completed after 0.11s


################################################################################
# Installation
#

Installing CherenkovDeconvolution...
   Resolving package versions...
   Installed Conda ── v1.10.3
   Installed PyCall ─ v1.94.1
    Updating `~/.julia/environments/v1.14/Project.toml`
  [7995dc16] + CherenkovDeconvolution v0.3.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [47edcb42] + ADTypes v1.20.0
  [79e6a3ab] + Adapt v4.4.0
  [4fba245c] + ArrayInterface v7.22.0
  [7995dc16] + CherenkovDeconvolution v0.3.0
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [8f4d0f93] + Conda v1.10.3
  [187b0558] + ConstructionBase v1.6.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.7.12
  [6e83dbb3] + Discretizers v3.2.4
  [ffbed154] + DocStringExtensions v0.9.5
  [4e289a0a] + EnumX v1.0.5
  [1a297f60] + FillArrays v1.15.0
  [6a86dc24] + FiniteDiff v2.29.0
  [f6369f11] + ForwardDiff v1.3.0
  [842dd82b] + InlineStrings v1.4.5
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [682c06a0] + JSON v1.3.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [d3d80556] + LineSearches v7.5.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.16
  [e1d29d7a] + Missings v1.2.0
  [d8a4904e] + MutableArithmetics v1.6.7
  [d41bc354] + NLSolversBase v7.10.0
  [77ba4419] + NaNMath v1.1.3
  [429524aa] + Optim v1.13.3
  [bac558e1] + OrderedCollections v1.8.1
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.3
⌅ [f27b6e38] + Polynomials v3.1.8
  [2dfb63ee] + PooledArrays v1.4.3
  [85a6dd25] + PositiveFactorizations v0.2.4
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [08abe8d2] + PrettyTables v3.1.2
⌅ [438e738f] + PyCall v1.94.1
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
⌅ [3646fa90] + ScikitLearn v0.6.6
  [6e75b9c4] + ScikitLearnBase v0.5.0
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
⌅ [2913bbd2] + StatsBase v0.33.21
  [892a3eda] + StringManipulation v0.4.2
  [ec057cc2] + StructUtils v2.6.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [3a884ed6] + UnPack v1.0.2
  [81def892] + VersionParsing v1.3.0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [b27032c2] + LibCURL v1.0.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.17.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.12.2
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log`
    Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/53b8b07b721b77144a0fbbbc2675222ebf40a02d/build.log`

Installation completed after 60.77s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 14.04s



################################################################################
# Loading
#

Loading CherenkovDeconvolution...
WARNING: Constructor for type "Symbol" was extended in `Polynomials` without explicit qualification or import.
  NOTE: Assumed "Symbol" refers to `Base.Symbol`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Symbol end`.
  Hint: To silence the warning, qualify `Symbol` as `Base.Symbol` in the method signature or explicitly `import Base: Symbol`.
ERROR: LoadError: ArgumentError: Source type for `reinterpret` must be isbits
Stacktrace:
  [1] _reinterpret
    @ ./reinterpretarray.jl:873 [inlined]
  [2] reinterpret
    @ ./essentials.jl:781 [inlined]
  [3] _preserveas!(dest::Vector{UInt8}, ::Type{Cwstring}, x::String)
    @ PyCall ~/.julia/packages/PyCall/ygXW2/deps/depsutils.jl:67
  [4] Py_SetPythonHome(libpy::Ptr{Nothing}, pyversion::VersionNumber, PYTHONHOME::String)
    @ PyCall ~/.julia/packages/PyCall/ygXW2/deps/depsutils.jl:36
  [5] top-level scope
    @ ~/.julia/packages/PyCall/ygXW2/src/startup.jl:57
  [6] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [7] top-level scope
    @ ~/.julia/packages/PyCall/ygXW2/src/PyCall.jl:38
  [8] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [10] top-level scope
    @ stdin:5
 [11] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [13] include_string
    @ ./loading.jl:3102 [inlined]
 [14] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [15] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/PyCall/ygXW2/src/startup.jl:41
in expression starting at /home/pkgeval/.julia/packages/PyCall/ygXW2/src/PyCall.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("438e738f-606a-5dbb-bf0a-cddfbfd45ab0"), "PyCall") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/ScikitLearn/Wvn7B/src/Skcore.jl:11
 [13] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [14] top-level scope
    @ ~/.julia/packages/ScikitLearn/Wvn7B/src/ScikitLearn.jl:12
 [15] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [17] top-level scope
    @ stdin:5
 [18] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [20] include_string
    @ ./loading.jl:3102 [inlined]
 [21] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [22] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/ScikitLearn/Wvn7B/src/Skcore.jl:5
in expression starting at /home/pkgeval/.julia/packages/ScikitLearn/Wvn7B/src/ScikitLearn.jl:10
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("3646fa90-6ef7-5e7e-9f22-8aca16db6324"), "ScikitLearn") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/CherenkovDeconvolution/Mui86/src/DeconvUtil.jl:24
 [13] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [14] top-level scope
    @ ~/.julia/packages/CherenkovDeconvolution/Mui86/src/CherenkovDeconvolution.jl:26
 [15] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [17] top-level scope
    @ stdin:5
 [18] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [20] include_string
    @ ./loading.jl:3102 [inlined]
 [21] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [22] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/CherenkovDeconvolution/Mui86/src/DeconvUtil.jl:22
in expression starting at /home/pkgeval/.julia/packages/CherenkovDeconvolution/Mui86/src/CherenkovDeconvolution.jl:22
in expression starting at stdin:5

  4 dependencies had output during precompilation:
┌ CherenkovDeconvolution
│  [Output was shown above]
└  
┌ Polynomials
│  WARNING: Constructor for type "Symbol" was extended in `Polynomials` without explicit qualification or import.
│    NOTE: Assumed "Symbol" refers to `Base.Symbol`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Symbol end`.
│    Hint: To silence the warning, qualify `Symbol` as `Base.Symbol` in the method signature or explicitly `import Base: Symbol`.
└  
┌ PyCall
│  ERROR: LoadError: ArgumentError: Source type for `reinterpret` must be isbits
│  Stacktrace:
│    [1] _reinterpret
│      @ ./reinterpretarray.jl:873 [inlined]
│    [2] reinterpret
│      @ ./essentials.jl:781 [inlined]
│    [3] _preserveas!(dest::Vector{UInt8}, ::Type{Cwstring}, x::String)
│      @ PyCall ~/.julia/packages/PyCall/ygXW2/deps/depsutils.jl:67
│    [4] Py_SetPythonHome(libpy::Ptr{Nothing}, pyversion::VersionNumber, PYTHONHOME::String)
│      @ PyCall ~/.julia/packages/PyCall/ygXW2/deps/depsutils.jl:36
│    [5] top-level scope
│      @ ~/.julia/packages/PyCall/ygXW2/src/startup.jl:57
│    [6] include(mapexpr::Function, mod::Module, _path::String)
│      @ Base ./Base.jl:310
│    [7] top-level scope
│      @ ~/.julia/packages/PyCall/ygXW2/src/PyCall.jl:38
│    [8] include(mod::Module, _path::String)
│      @ Base ./Base.jl:309
│    [9] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base ./loading.jl:3250
│   [10] top-level scope
│      @ stdin:5
│   [11] eval(m::Module, e::Any)
│      @ Core ./boot.jl:489
│   [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base ./loading.jl:3092
│   [13] include_string
│      @ ./loading.jl:3102 [inlined]
│   [14] exec_options(opts::Base.JLOptions)
│      @ Base ./client.jl:342
│   [15] _start()
│      @ Base ./client.jl:577
│  in expression starting at /home/pkgeval/.julia/packages/PyCall/ygXW2/src/startup.jl:41
│  in expression starting at /home/pkgeval/.julia/packages/PyCall/ygXW2/src/PyCall.jl:1
│  in expression starting at stdin:5
└  
┌ ScikitLearn
│  ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("438e738f-606a-5dbb-bf0a-cddfbfd45ab0"), "PyCall") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
│  Stacktrace:
│    [1] error(s::String)
│      @ Base ./error.jl:44
│    [2] __require_prelocked(pkg::Base.PkgId, env::String)
│      @ Base ./loading.jl:2813
│    [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
│      @ Base ./loading.jl:2665
│    [4] macro expansion
│      @ ./loading.jl:2593 [inlined]
│    [5] macro expansion
│      @ ./lock.jl:376 [inlined]
│    [6] __require(into::Module, mod::Symbol)
│      @ Base ./loading.jl:2557
│    [7] require
│      @ ./loading.jl:2533 [inlined]
│    [8] eval_import_path
│      @ ./module.jl:36 [inlined]
│    [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
│      @ Base ./module.jl:60
│   [10] _eval_using
│      @ ./module.jl:137 [inlined]
│   [11] _eval_using(to::Module, path::Expr)
│      @ Base ./module.jl:137
│   [12] top-level scope
│      @ ~/.julia/packages/ScikitLearn/Wvn7B/src/Skcore.jl:11
│   [13] include(mapexpr::Function, mod::Module, _path::String)
│      @ Base ./Base.jl:310
│   [14] top-level scope
│      @ ~/.julia/packages/ScikitLearn/Wvn7B/src/ScikitLearn.jl:12
│   [15] include(mod::Module, _path::String)
│      @ Base ./Base.jl:309
│   [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base ./loading.jl:3250
│   [17] top-level scope
│      @ stdin:5
│   [18] eval(m::Module, e::Any)
│      @ Core ./boot.jl:489
│   [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base ./loading.jl:3092
│   [20] include_string
│      @ ./loading.jl:3102 [inlined]
│   [21] exec_options(opts::Base.JLOptions)
│      @ Base ./client.jl:342
│   [22] _start()
│      @ Base ./client.jl:577
│  in expression starting at /home/pkgeval/.julia/packages/ScikitLearn/Wvn7B/src/Skcore.jl:5
│  in expression starting at /home/pkgeval/.julia/packages/ScikitLearn/Wvn7B/src/ScikitLearn.jl:10
│  in expression starting at stdin:5
└  
ERROR: The following 3 packages failed to precompile:

CherenkovDeconvolution 
Failed to precompile CherenkovDeconvolution [7995dc16-b5cc-11e8-32a0-21341f07e0b5] to "/home/pkgeval/.julia/compiled/v1.14/CherenkovDeconvolution/jl_w9pqrT" (ProcessExited(1)).

PyCall 
Failed to precompile PyCall [438e738f-606a-5dbb-bf0a-cddfbfd45ab0] to "/home/pkgeval/.julia/compiled/v1.14/PyCall/jl_plT5mj" (ProcessExited(1)).

ScikitLearn 
Failed to precompile ScikitLearn [3646fa90-6ef7-5e7e-9f22-8aca16db6324] to "/home/pkgeval/.julia/compiled/v1.14/ScikitLearn/jl_T1vhrA" (ProcessExited(1)).


Loading failed after 160.48s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using CherenkovDeconvolution'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:211
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:202

PkgEval failed after 268.01s: package fails to precompile