Package evaluation to load BayesianTomography on Julia 1.14.0-DEV.1352 (749bc618c5*) started at 2025-12-09T21:40:54.799


################################################################################
# Set-up
#


Set-up completed after 0.13s


################################################################################
# Installation
#

Installing BayesianTomography...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [ae1f9aa5] + BayesianTomography v0.1.3
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [1520ce14] + AbstractTrees v0.4.5
  [66dad0bd] + AliasTables v1.1.3
  [ae1f9aa5] + BayesianTomography v0.1.3
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.3
  [b552c78f] + DiffRules v1.15.1
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.15.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [77ba4419] + NaNMath v1.1.3
  [a15396b6] + OnlineStats v1.7.3
  [925886fa] + OnlineStatsBase v1.7.1
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.36
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.9.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.9
  [4c63d2b9] + StatsFuns v1.5.2
  [bc48ee85] + Tullio v0.3.8
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 6.26s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 13.48s



################################################################################
# Loading
#

Loading BayesianTomography...
ERROR: LoadError: UndefVarError: `_shrink` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty
    @ ./Base_compiler.jl:50 [inlined]
  [2] _precompile_()
    @ Tullio._Precompile_Base ~/.julia/packages/Tullio/2zyFP/src/precompile/precompile_Base.jl:77
  [3] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/precompile.jl:14
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [5] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/Tullio.jl:27
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [7] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [11] include_string
    @ ./loading.jl:3102 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [13] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/Tullio.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bc48ee85-29a4-5162-ae0b-a64e1601d4bc"), "Tullio") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/ext/TullioFillArraysExt.jl:6
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [18] include_string
    @ ./loading.jl:3102 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/ext/TullioFillArraysExt.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bc48ee85-29a4-5162-ae0b-a64e1601d4bc"), "Tullio") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/BayesianTomography/ilGPC/src/BayesianTomography.jl:3
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [18] include_string
    @ ./loading.jl:3102 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/BayesianTomography/ilGPC/src/BayesianTomography.jl:1
in expression starting at stdin:5

  3 dependencies had output during precompilation:
┌ Tullio
│  ERROR: LoadError: UndefVarError: `_shrink` not defined in `Base`
│  Suggestion: check for spelling errors or missing imports.
│  Stacktrace:
│    [1] getproperty
│      @ ./Base_compiler.jl:50 [inlined]
│    [2] _precompile_()
│      @ Tullio._Precompile_Base ~/.julia/packages/Tullio/2zyFP/src/precompile/precompile_Base.jl:77
│    [3] top-level scope
│      @ ~/.julia/packages/Tullio/2zyFP/src/precompile.jl:14
│    [4] include(mapexpr::Function, mod::Module, _path::String)
│      @ Base ./Base.jl:310
│    [5] top-level scope
│      @ ~/.julia/packages/Tullio/2zyFP/src/Tullio.jl:27
│    [6] include(mod::Module, _path::String)
│      @ Base ./Base.jl:309
│    [7] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base ./loading.jl:3250
│    [8] top-level scope
│      @ stdin:5
│    [9] eval(m::Module, e::Any)
│      @ Core ./boot.jl:489
│   [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base ./loading.jl:3092
│   [11] include_string
│      @ ./loading.jl:3102 [inlined]
│   [12] exec_options(opts::Base.JLOptions)
│      @ Base ./client.jl:342
│   [13] _start()
│      @ Base ./client.jl:577
│  in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/precompile.jl:13
│  in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/Tullio.jl:1
│  in expression starting at stdin:5
└  
┌ Tullio → TullioFillArraysExt
│  ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("bc48ee85-29a4-5162-ae0b-a64e1601d4bc"), "Tullio") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
│  Stacktrace:
│    [1] error(s::String)
│      @ Base ./error.jl:44
│    [2] __require_prelocked(pkg::Base.PkgId, env::String)
│      @ Base ./loading.jl:2813
│    [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
│      @ Base ./loading.jl:2665
│    [4] macro expansion
│      @ ./loading.jl:2593 [inlined]
│    [5] macro expansion
│      @ ./lock.jl:376 [inlined]
│    [6] __require(into::Module, mod::Symbol)
│      @ Base ./loading.jl:2557
│    [7] require
│      @ ./loading.jl:2533 [inlined]
│    [8] eval_import_path
│      @ ./module.jl:36 [inlined]
│    [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
│      @ Base ./module.jl:60
│   [10] _eval_using
│      @ ./module.jl:137 [inlined]
│   [11] _eval_using(to::Module, path::Expr)
│      @ Base ./module.jl:137
│   [12] top-level scope
│      @ ~/.julia/packages/Tullio/2zyFP/ext/TullioFillArraysExt.jl:6
│   [13] include(mod::Module, _path::String)
│      @ Base ./Base.jl:309
│   [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base ./loading.jl:3250
│   [15] top-level scope
│      @ stdin:5
│   [16] eval(m::Module, e::Any)
│      @ Core ./boot.jl:489
│   [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base ./loading.jl:3092
│   [18] include_string
│      @ ./loading.jl:3102 [inlined]
│   [19] exec_options(opts::Base.JLOptions)
│      @ Base ./client.jl:342
│   [20] _start()
│      @ Base ./client.jl:577
│  in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/ext/TullioFillArraysExt.jl:1
│  in expression starting at stdin:5
└  
┌ BayesianTomography
│  [Output was shown above]
└  
ERROR: The following 3 packages failed to precompile:

Tullio 
Failed to precompile Tullio [bc48ee85-29a4-5162-ae0b-a64e1601d4bc] to "/home/pkgeval/.julia/compiled/v1.14/Tullio/jl_wYuwGS" (ProcessExited(1)).

TullioFillArraysExt 
Failed to precompile TullioFillArraysExt [60bb3dbd-9359-5728-a9d3-cfbdd274ce04] to "/home/pkgeval/.julia/compiled/v1.14/TullioFillArraysExt/jl_1CKD3A" (ProcessExited(1)).

BayesianTomography 
Failed to precompile BayesianTomography [ae1f9aa5-51e1-43df-aa72-b1a458b33a1f] to "/home/pkgeval/.julia/compiled/v1.14/BayesianTomography/jl_L3BkGz" (ProcessExited(1)).


Loading failed after 51.85s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using BayesianTomography'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:211
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:202

PkgEval failed after 87.86s: package fails to precompile