Package evaluation to test TrajGWAS on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T05:54:48.051 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.99s ################################################################################ # Installation # Installing TrajGWAS... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [9514c204] + TrajGWAS v0.4.7 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.25.0 [67c07d97] + Automa v1.2.0 [13072b0f] + AxisAlgorithms v1.1.0 [6db4b851] + BGEN v0.2.2 [28d598bf] + BGZFStreams v0.3.2 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.16 ⌅ [324d7699] + CategoricalArrays v0.10.9 [d360d2e6] + ChainRulesCore v1.26.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.7 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a10d1c49] + DBInterface v2.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.31.0 [f6369f11] + ForwardDiff v1.4.1 [2447270c] + GeneticVariantBase v0.1.2 [c27321d9] + Glob v1.5.0 [3e5b6fbb] + HostCPUFeatures v0.1.18 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.8 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [a98d9a8b] + Interpolations v0.16.3 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [b6b21f68] + Ipopt v1.14.3 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 ⌃ [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v1.0.1 [bdcacae8] + LoopVectorization v0.12.174 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.51.1 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.8.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.4 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [429524aa] + Optim v1.13.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.6 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.0 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.46 [0aa819cd] + SQLite v1.8.1 [431bcebd] + SciMLPublic v1.0.1 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.23 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [aedffcd0] + Static v1.4.0 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [3eaba693] + StatsModels v0.7.10 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.6 [9514c204] + TrajGWAS v0.4.7 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.9 [3d5dd08c] + VectorizationBase v0.21.74 [ea10d353] + WeakRefStrings v1.4.3 [2ff19380] + WiSER v0.2.6 [efce3f68] + WoodburyMatrices v1.1.0 [76eceee3] + WorkerUtilities v1.6.1 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [e33a78d0] + Hwloc_jll v2.14.0+0 ⌅ [9cc047cb] + Ipopt_jll v300.1400.1901+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [d00139f3] + METIS_jll v5.1.3+0 ⌅ [d7ed1dd3] + MUMPS_seq_jll v500.800.200+0 [079eb43e] + NLopt_jll v2.11.0+0 [656ef2d0] + OpenBLAS32_jll v0.3.33+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [319450e9] + SPRAL_jll v2025.9.18+0 [76ed43ae] + SQLite_jll v3.53.2+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.3+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.46s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 20453.0 ms ✓ BGEN 92118.1 ms ✓ MathOptInterface 111485.3 ms ✓ NLopt 155922.1 ms ✓ Ipopt → IpoptMathOptInterfaceExt 102544.4 ms ✓ Optim → OptimMOIExt 220037.1 ms ✓ WiSER 1.3111998e6 ms ✓ TrajGWAS 7 dependencies successfully precompiled in 2032 seconds. 233 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 130 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 2040.59s ################################################################################ # Testing # Testing TrajGWAS Status `/tmp/jl_7s6WQM/Project.toml` [6db4b851] BGEN v0.2.2 [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.2 [31c24e10] Distributions v0.25.127 [a98d9a8b] Interpolations v0.16.3 [b8f27783] MathOptInterface v1.51.1 ⌅ [429524aa] Optim v1.13.3 [189a3867] Reexport v1.2.2 [4e780e97] SnpArrays v0.3.23 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.12 [3eaba693] StatsModels v0.7.10 [bd369af6] Tables v1.12.1 [9514c204] TrajGWAS v0.4.7 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [2ff19380] WiSER v0.2.6 [37e2e46d] LinearAlgebra v1.12.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_7s6WQM/Manifest.toml` [47edcb42] ADTypes v1.22.0 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.25.0 [67c07d97] Automa v1.2.0 [13072b0f] AxisAlgorithms v1.1.0 [6db4b851] BGEN v0.2.2 [28d598bf] BGZFStreams v0.3.2 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.16 ⌅ [324d7699] CategoricalArrays v0.10.9 [d360d2e6] ChainRulesCore v1.26.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.7 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [a10d1c49] DBInterface v2.6.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.18 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.31.0 [f6369f11] ForwardDiff v1.4.1 [2447270c] GeneticVariantBase v0.1.2 [c27321d9] Glob v1.5.0 [3e5b6fbb] HostCPUFeatures v0.1.18 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.8 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [a98d9a8b] Interpolations v0.16.3 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [b6b21f68] Ipopt v1.14.3 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 ⌃ [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v1.0.1 [bdcacae8] LoopVectorization v0.12.174 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [b8f27783] MathOptInterface v1.51.1 [fdba3010] MathProgBase v0.7.8 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.8.0 ⌅ [d41bc354] NLSolversBase v7.10.0 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.4 [6fe1bfb0] OffsetArrays v1.17.0 ⌅ [429524aa] Optim v1.13.3 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.6 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.0 [fdea26ae] SIMD v3.7.2 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.46 [0aa819cd] SQLite v1.8.1 [431bcebd] SciMLPublic v1.0.1 [91c51154] SentinelArrays v1.4.10 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [4e780e97] SnpArrays v0.3.23 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [aedffcd0] Static v1.4.0 [0d7ed370] StaticArrayInterface v1.10.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [3eaba693] StatsModels v0.7.10 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [8290d209] ThreadingUtilities v0.5.6 [9514c204] TrajGWAS v0.4.7 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [3a884ed6] UnPack v1.0.2 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [3d5dd08c] VectorizationBase v0.21.74 [ea10d353] WeakRefStrings v1.4.3 [2ff19380] WiSER v0.2.6 [efce3f68] WoodburyMatrices v1.1.0 [76eceee3] WorkerUtilities v1.6.1 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [e33a78d0] Hwloc_jll v2.14.0+0 ⌅ [9cc047cb] Ipopt_jll v300.1400.1901+0 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 ⌅ [d7ed1dd3] MUMPS_seq_jll v500.800.200+0 [079eb43e] NLopt_jll v2.11.0+0 [656ef2d0] OpenBLAS32_jll v0.3.33+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [319450e9] SPRAL_jll v2025.9.18+0 [76ed43ae] SQLite_jll v3.53.2+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.3+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 [3161d3a3] Zstd_jll v1.5.7+1 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ****************************************************************************** This program contains Ipopt, a library for large-scale nonlinear optimization. Ipopt is released as open source code under the Eclipse Public License (EPL). For more information visit https://github.com/coin-or/Ipopt ****************************************************************************** run = 1, ‖Δβ‖ = 0.226739, ‖Δτ‖ = 0.457389, ‖ΔL‖ = 0.109248, status = LOCALLY_SOLVED, time(s) = 3.150953 run = 2, ‖Δβ‖ = 0.057532, ‖Δτ‖ = 0.014932, ‖ΔL‖ = 0.041254, status = LOCALLY_SOLVED, time(s) = 0.190255 Test Summary: | Pass Total Time generic | 4 4 37.0s Test Summary: | Pass Total Time generic_invariant | 4 4 13.3s run = 1, ‖Δβ‖ = 0.037090, ‖Δτ‖ = 0.136339, ‖ΔL‖ = 0.005441, status = LOCALLY_SOLVED, time(s) = 0.117024 run = 2, ‖Δβ‖ = 0.000913, ‖Δτ‖ = 0.019810, ‖ΔL‖ = 0.001582, status = LOCALLY_SOLVED, time(s) = 0.102162 0.2089229077734306 0.19055788036352628 run = 1, ‖Δβ‖ = 0.037090, ‖Δτ‖ = 0.136339, ‖ΔL‖ = 0.005441, status = LOCALLY_SOLVED, time(s) = 0.106783 run = 2, ‖Δβ‖ = 0.000913, ‖Δτ‖ = 0.019810, ‖ΔL‖ = 0.001582, status = LOCALLY_SOLVED, time(s) = 0.093438 0.2084190062148525 0.18913803850068825 Test Summary: | Pass Total Time trajgwas_singlesnp_plink | 2 2 2m04.6s run = 1, ‖Δβ‖ = 0.003459, ‖Δτ‖ = 0.421747, ‖ΔL‖ = 0.002492, status = LOCALLY_SOLVED, time(s) = 0.037124 run = 2, ‖Δβ‖ = 0.001369, ‖Δτ‖ = 0.015998, ‖ΔL‖ = 0.003244, status = LOCALLY_SOLVED, time(s) = 0.030897 run = 1, ‖Δβ‖ = 0.003459, ‖Δτ‖ = 0.421747, ‖ΔL‖ = 0.002492, status = LOCALLY_SOLVED, time(s) = 0.035997 run = 2, ‖Δβ‖ = 0.001369, ‖Δτ‖ = 0.015998, ‖ΔL‖ = 0.003244, status = LOCALLY_SOLVED, time(s) = 0.028988 Test Summary: | Pass Total Time trajgwas_singlesnp_vcf | 2 2 26.7s run = 1, ‖Δβ‖ = 0.096578, ‖Δτ‖ = 0.162563, ‖ΔL‖ = 0.007625, status = LOCALLY_SOLVED, time(s) = 0.116427 run = 2, ‖Δβ‖ = 0.003173, ‖Δτ‖ = 0.005584, ‖ΔL‖ = 0.001468, status = LOCALLY_SOLVED, time(s) = 0.104453 0.464291821807929550.49317590385507415 run = 1, ‖Δβ‖ = 0.096578, ‖Δτ‖ = 0.162563, ‖ΔL‖ = 0.007625, status = LOCALLY_SOLVED, time(s) = 0.111378 run = 2, ‖Δβ‖ = 0.003173, ‖Δτ‖ = 0.005584, ‖ΔL‖ = 0.001468, status = LOCALLY_SOLVED, time(s) = 0.104156 Test Summary: | Pass Total Time trajgwas_singlesnp_bgen | 2 2 1m08.0s run = 1, ‖Δβ‖ = 0.040947, ‖Δτ‖ = 0.071411, ‖ΔL‖ = 0.000478, status = LOCALLY_SOLVED, time(s) = 0.041850 run = 2, ‖Δβ‖ = 0.000251, ‖Δτ‖ = 0.000010, ‖ΔL‖ = 0.000097, status = LOCALLY_SOLVED, time(s) = 0.031454 run = 1, ‖Δβ‖ = 0.040947, ‖Δτ‖ = 0.071411, ‖ΔL‖ = 0.000478, status = LOCALLY_SOLVED, time(s) = 0.046471 run = 2, ‖Δβ‖ = 0.000251, ‖Δτ‖ = 0.000010, ‖ΔL‖ = 0.000097, status = LOCALLY_SOLVED, time(s) = 0.033556 run = 1, ‖Δβ‖ = 0.040947, ‖Δτ‖ = 0.071411, ‖ΔL‖ = 0.000478, status = LOCALLY_SOLVED, time(s) = 0.037378 run = 2, ‖Δβ‖ = 0.000251, ‖Δτ‖ = 0.000010, ‖ΔL‖ = 0.000097, status = LOCALLY_SOLVED, time(s) = 0.027163 Test Summary: | Pass Total Time trajgwas_snpset_plink | 3 3 25.4s run = 1, ‖Δβ‖ = 0.003459, ‖Δτ‖ = 0.421747, ‖ΔL‖ = 0.002492, status = LOCALLY_SOLVED, time(s) = 0.045008 run = 2, ‖Δβ‖ = 0.001369, ‖Δτ‖ = 0.015998, ‖ΔL‖ = 0.003244, status = LOCALLY_SOLVED, time(s) = 0.034892 run = 1, ‖Δβ‖ = 0.004330, ‖Δτ‖ = 0.403070, ‖ΔL‖ = 0.008125, status = LOCALLY_SOLVED, time(s) = 0.029378 run = 2, ‖Δβ‖ = 0.003020, ‖Δτ‖ = 0.000340, ‖ΔL‖ = 0.003227, status = LOCALLY_SOLVED, time(s) = 0.023301 ┌ Warning: This method requires reading in the entire VCF File. │ This can take a lot of memory for large files, as they must be brought into memory. └ @ TrajGWAS ~/.julia/packages/TrajGWAS/y0Cm6/src/gwas.jl:1405 run = 1, ‖Δβ‖ = 0.004330, ‖Δτ‖ = 0.403070, ‖ΔL‖ = 0.008125, status = LOCALLY_SOLVED, time(s) = 0.027136 run = 2, ‖Δβ‖ = 0.003020, ‖Δτ‖ = 0.000340, ‖ΔL‖ = 0.003227, status = LOCALLY_SOLVED, time(s) = 0.021567 ┌ Warning: This method requires reading in the entire VCF File. │ This can take a lot of memory for large files, as they must be brought into memory. └ @ TrajGWAS ~/.julia/packages/TrajGWAS/y0Cm6/src/gwas.jl:1450 Test Summary: | Pass Total Time trajgwas_snpset_vcf | 3 3 27.5s run = 1, ‖Δβ‖ = 0.096578, ‖Δτ‖ = 0.162563, ‖ΔL‖ = 0.007625, status = LOCALLY_SOLVED, time(s) = 0.101397 run = 2, ‖Δβ‖ = 0.003173, ‖Δτ‖ = 0.005584, ‖ΔL‖ = 0.001468, status = LOCALLY_SOLVED, time(s) = 0.084869 run = 1, ‖Δβ‖ = 0.091220, ‖Δτ‖ = 0.027517, ‖ΔL‖ = 0.001323, status = LOCALLY_SOLVED, time(s) = 0.070431 run = 2, ‖Δβ‖ = 0.000603, ‖Δτ‖ = 0.000018, ‖ΔL‖ = 0.000001, status = LOCALLY_SOLVED, time(s) = 0.051832 run = 1, ‖Δβ‖ = 0.091220, ‖Δτ‖ = 0.027517, ‖ΔL‖ = 0.001323, status = LOCALLY_SOLVED, time(s) = 0.066892 run = 2, ‖Δβ‖ = 0.000603, ‖Δτ‖ = 0.000018, ‖ΔL‖ = 0.000001, status = LOCALLY_SOLVED, time(s) = 0.051250 Test Summary: | Pass Total Time trajgwas_snpset_bgen | 3 3 55.2s run = 1, ‖Δβ‖ = 0.037090, ‖Δτ‖ = 0.136339, ‖ΔL‖ = 0.005441, status = LOCALLY_SOLVED, time(s) = 0.098953 run = 2, ‖Δβ‖ = 0.000913, ‖Δτ‖ = 0.019810, ‖ΔL‖ = 0.001582, status = LOCALLY_SOLVED, time(s) = 0.089682 run = 1, ‖Δβ‖ = 0.480377, ‖Δτ‖ = 0.023510, ‖ΔL‖ = 0.001822, status = LOCALLY_SOLVED, time(s) = 0.113213 run = 2, ‖Δβ‖ = 0.000323, ‖Δτ‖ = 0.002136, ‖ΔL‖ = 0.000025, status = LOCALLY_SOLVED, time(s) = 0.108979 run = 1, ‖Δβ‖ = 1.059989, ‖Δτ‖ = 0.458239, ‖ΔL‖ = 0.063093, status = LOCALLY_SOLVED, time(s) = 0.134407 run = 2, ‖Δβ‖ = 0.009118, ‖Δτ‖ = 0.105352, ‖ΔL‖ = 0.000056, status = LOCALLY_SOLVED, time(s) = 0.132312 run = 1, ‖Δβ‖ = 1.144781, ‖Δτ‖ = 0.251459, ‖ΔL‖ = 0.034318, status = LOCALLY_SOLVED, time(s) = 0.114411 run = 2, ‖Δβ‖ = 0.000830, ‖Δτ‖ = 0.025631, ‖ΔL‖ = 0.000042, status = LOCALLY_SOLVED, time(s) = 0.109362 run = 1, ‖Δβ‖ = 0.683108, ‖Δτ‖ = 0.773919, ‖ΔL‖ = 0.042397, status = LOCALLY_SOLVED, time(s) = 0.102862 run = 2, ‖Δβ‖ = 0.008159, ‖Δτ‖ = 0.069178, ‖ΔL‖ = 0.003574, status = LOCALLY_SOLVED, time(s) = 0.107995 run = 1, ‖Δβ‖ = 2.098898, ‖Δτ‖ = 1.507867, ‖ΔL‖ = 0.001622, status = LOCALLY_SOLVED, time(s) = 0.163884 run = 2, ‖Δβ‖ = 0.019418, ‖Δτ‖ = 0.135459, ‖ΔL‖ = 0.000693, status = LOCALLY_SOLVED, time(s) = 0.130015 run = 1, ‖Δβ‖ = 0.991636, ‖Δτ‖ = 0.497592, ‖ΔL‖ = 0.085477, status = LOCALLY_SOLVED, time(s) = 0.110050 run = 2, ‖Δβ‖ = 0.007112, ‖Δτ‖ = 0.048855, ‖ΔL‖ = 0.001937, status = LOCALLY_SOLVED, time(s) = 0.100886 run = 1, ‖Δβ‖ = 0.538890, ‖Δτ‖ = 0.561885, ‖ΔL‖ = 0.008679, status = LOCALLY_SOLVED, time(s) = 0.113931 run = 2, ‖Δβ‖ = 0.005768, ‖Δτ‖ = 0.052304, ‖ΔL‖ = 0.001816, status = LOCALLY_SOLVED, time(s) = 0.113652 run = 1, ‖Δβ‖ = 0.291026, ‖Δτ‖ = 0.105558, ‖ΔL‖ = 0.001157, status = LOCALLY_SOLVED, time(s) = 0.124207 run = 2, ‖Δβ‖ = 0.002563, ‖Δτ‖ = 0.023749, ‖ΔL‖ = 0.000197, status = LOCALLY_SOLVED, time(s) = 0.115364 Test Summary: | Pass Total Time trajgwas_gxe_plink | 1 1 33.2s run = 1, ‖Δβ‖ = 0.003459, ‖Δτ‖ = 0.421747, ‖ΔL‖ = 0.002492, status = LOCALLY_SOLVED, time(s) = 0.040590 run = 2, ‖Δβ‖ = 0.001369, ‖Δτ‖ = 0.015998, ‖ΔL‖ = 0.003244, status = LOCALLY_SOLVED, time(s) = 0.034067 run = 1, ‖Δβ‖ = 1.766233, ‖Δτ‖ = 0.190501, ‖ΔL‖ = 0.001092, status = LOCALLY_SOLVED, time(s) = 0.037692 run = 2, ‖Δβ‖ = 0.000420, ‖Δτ‖ = 0.017892, ‖ΔL‖ = 0.000106, status = LOCALLY_SOLVED, time(s) = 0.042299 run = 1, ‖Δβ‖ = 22.949357, ‖Δτ‖ = 8.168699, ‖ΔL‖ = 0.004072, status = LOCALLY_SOLVED, time(s) = 0.054135 run = 2, ‖Δβ‖ = 0.058329, ‖Δτ‖ = 0.125962, ‖ΔL‖ = 0.000397, status = LOCALLY_SOLVED, time(s) = 0.045881 run = 1, ‖Δβ‖ = 4.304201, ‖Δτ‖ = 11.486618, ‖ΔL‖ = 0.002078, status = LOCALLY_SOLVED, time(s) = 0.066415 run = 2, ‖Δβ‖ = 0.004943, ‖Δτ‖ = 2.643245, ‖ΔL‖ = 0.001795, status = LOCALLY_SOLVED, time(s) = 0.054949 run = 1, ‖Δβ‖ = 0.667219, ‖Δτ‖ = 0.298181, ‖ΔL‖ = 0.029436, status = LOCALLY_SOLVED, time(s) = 0.070051 run = 2, ‖Δβ‖ = 0.010613, ‖Δτ‖ = 0.039022, ‖ΔL‖ = 0.000174, status = LOCALLY_SOLVED, time(s) = 0.058398 run = 1, ‖Δβ‖ = 11.196144, ‖Δτ‖ = 10.912168, ‖ΔL‖ = 0.001531, status = LOCALLY_SOLVED, time(s) = 0.052226 run = 2, ‖Δβ‖ = 0.033644, ‖Δτ‖ = 0.048537, ‖ΔL‖ = 0.000505, status = LOCALLY_SOLVED, time(s) = 0.044780 run = 1, ‖Δβ‖ = 1.146113, ‖Δτ‖ = 0.089098, ‖ΔL‖ = 0.006116, status = LOCALLY_SOLVED, time(s) = 0.053804 run = 2, ‖Δβ‖ = 0.001804, ‖Δτ‖ = 0.006435, ‖ΔL‖ = 0.000094, status = LOCALLY_SOLVED, time(s) = 0.045788 run = 1, ‖Δβ‖ = 75.240926, ‖Δτ‖ = 35.436788, ‖ΔL‖ = 0.021237, status = LOCALLY_SOLVED, time(s) = 0.051423 run = 2, ‖Δβ‖ = 0.009969, ‖Δτ‖ = 1.006758, ‖ΔL‖ = 0.000962, status = LOCALLY_SOLVED, time(s) = 0.046896 run = 1, ‖Δβ‖ = 4.279400, ‖Δτ‖ = 0.171277, ‖ΔL‖ = 0.003532, status = LOCALLY_SOLVED, time(s) = 0.059079 run = 2, ‖Δβ‖ = 0.001745, ‖Δτ‖ = 0.043685, ‖ΔL‖ = 0.000076, status = LOCALLY_SOLVED, time(s) = 0.057717 Test Summary: | Pass Total Time trajgwas_gxe_vcf | 1 1 12.6s run = 1, ‖Δβ‖ = 0.096578, ‖Δτ‖ = 0.162563, ‖ΔL‖ = 0.007625, status = LOCALLY_SOLVED, time(s) = 0.116062 run = 2, ‖Δβ‖ = 0.003173, ‖Δτ‖ = 0.005584, ‖ΔL‖ = 0.001468, status = LOCALLY_SOLVED, time(s) = 0.096560 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 203 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm16SelectionDAGISel16SelectCodeCommonEPNS_6SDNodeEPKhj at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_115X86DAGToDAGISel6SelectEPN4llvm6SDNodeE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm16SelectionDAGISel22DoInstructionSelectionEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm16SelectionDAGISel17CodeGenAndEmitDAGEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm16SelectionDAGISel20SelectAllBasicBlocksERKNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm16SelectionDAGISel20runOnMachineFunctionERNS_15MachineFunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_115X86DAGToDAGISel20runOnMachineFunctionERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1561 addModule at /source/src/jitlayers.cpp:2044 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824 jl_compile_method_internal at /source/src/gf.c:3528 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 iterate at ./generator.jl:48 [inlined] Dict at ./dict.jl:93 Schema at /home/pkgeval/.julia/packages/StatsModels/OasXV/src/schema.jl:37 [inlined] schema at /home/pkgeval/.julia/packages/StatsModels/OasXV/src/schema.jl:124 [inlined] schema at /home/pkgeval/.julia/packages/StatsModels/OasXV/src/schema.jl:128 schema at /home/pkgeval/.julia/packages/StatsModels/OasXV/src/schema.jl:131 unknown function (ip: 0x7fe37d3b900d) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #WSVarLmmModel#29 at /home/pkgeval/.julia/packages/WiSER/Yi6BX/src/df.jl:156 WSVarLmmModel at /home/pkgeval/.julia/packages/WiSER/Yi6BX/src/df.jl:119 unknown function (ip: 0x7fe37d3b1448) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #WSVarLmmModel#28 at /home/pkgeval/.julia/packages/WiSER/Yi6BX/src/df.jl:109 WSVarLmmModel at /home/pkgeval/.julia/packages/WiSER/Yi6BX/src/df.jl:109 unknown function (ip: 0x7fe37d4b1896) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #118 at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/gwas.jl:2298 makestream at /home/pkgeval/.julia/packages/SnpArrays/UNmxR/src/codec.jl:31 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #trajgwas#92 at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/gwas.jl:2260 trajgwas at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/gwas.jl:1663 unknown function (ip: 0x7fe37d377217) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #trajgwas#20 at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/gwas.jl:343 unknown function (ip: 0x7fe37d461551) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 trajgwas at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/gwas.jl:184 unknown function (ip: 0x7fe37d36cd42) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #trajgwas#16 at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/gwas.jl:180 unknown function (ip: 0x7fe37d36bc7c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 trajgwas at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/gwas.jl:148 #trajgwas#12 at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/gwas.jl:143 [inlined] trajgwas at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/gwas.jl:127 unknown function (ip: 0x7fe37d36a7be) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7fe3fc893249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_70429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x7eeed39811d3) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x7eeed397036c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x7eeed396c8d9) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x7eeed396c511) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x7eeed396b770) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x7eeed396182f) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7eeeee2b7249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007eeed39fc010 Total snapshots: 351. Utilization: 0% ╎351 @Base/client.jl:550 _start() ╎ 351 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 351 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 351 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ 351 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ 351 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 351 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 351 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 351 @Pkg/src/API.jl:157 test ╎ ╎ 351 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 351 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 351 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 351 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 351 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 351 @Pkg/…erations.jl:2387 test ╎ ╎ ╎ 351 @Pkg/…erations.jl:2481 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 351 @Pkg/…rations.jl:2215 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 351 @Pkg/…rations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 351 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 351 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 351 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 351 @Pkg/…tions.jl:2278 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 351 @Pkg/…tions.jl:2164 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 351 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 351 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 351 @Pkg/…ions.jl:2496 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 351 @Pkg/…ons.jl:2556 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 351 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 351 @Base/…ss.jl:693 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 351 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 351 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 351 @Base/…sk.jl:1228 wait() 350╎ ╎ ╎ ╎ ╎ ╎ ╎ 351 @Base/…sk.jl:1216 poptask(W::Base.Intr… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 24533686 (Pool: 24532991; Big: 695); GC: 26 [203] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/test/runtests.jl:378 emit_bits_compare at /source/src/codegen.cpp:3456 operator() at /source/src/codegen.cpp:3626 [inlined] operator() at /source/src/codegen.cpp:3615 emit_nullcheck_guard&> at /source/src/cgutils.cpp:1725 [inlined] emit_nullcheck_guard2 > at /source/src/cgutils.cpp:1734 [inlined] emit_f_is at /source/src/codegen.cpp:3615 emit_builtin_call at /source/src/codegen.cpp:4072 emit_call at /source/src/codegen.cpp:5538 emit_expr at /source/src/codegen.cpp:6447 emit_ssaval_assign at /source/src/codegen.cpp:5933 emit_stmtpos at /source/src/codegen.cpp:6236 emit_function at /source/src/codegen.cpp:9412 jl_emit_code at /source/src/codegen.cpp:9792 jl_emit_codeinst at /source/src/codegen.cpp:9863 jl_emit_codeinst_to_jit_impl at /source/src/jitlayers.cpp:770 jl_add_codeinst_to_jit at /source/src/gf.c:3376 add_codeinsts_to_jit! at ./../usr/share/julia/Compiler/src/typeinfer.jl:1433 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1440 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1448 jfptr_typeinf_ext_toplevel_82967.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_type_infer at /source/src/gf.c:466 jl_compile_method_internal at /source/src/gf.c:3516 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:900 ansi_write_ at ./strings/annotated_io.jl:218 [inlined] print at ./strings/annotated_io.jl:243 [inlined] print at ./strings/io.jl:46 println at ./strings/io.jl:77 [inlined] print_tree at /source/usr/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1248 tree at /source/usr/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1308 print_group at /source/usr/share/julia/stdlib/v1.12/Profile/src/Profile.jl:389 #print#5 at /source/usr/share/julia/stdlib/v1.12/Profile/src/Profile.jl:331 print at /source/usr/share/julia/stdlib/v1.12/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.12/Profile/src/Profile.jl:271 [inlined] print at /source/usr/share/julia/stdlib/v1.12/Profile/src/Profile.jl:271 _peek_report at /source/usr/share/julia/stdlib/v1.12/Profile/src/Profile.jl:94 unknown function (ip: 0x7fe37d3e448f) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f_invokelatest at /source/src/builtins.c:881 profile_printing_listener at ./Base.jl:334 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 431135734 (Pool: 431133166; Big: 2568); GC: 100 PkgEval terminated after 2728.19s: test duration exceeded the time limit