Package evaluation to test TopoChains on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T11:18:08.944


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.12`

Set-up completed after 8.32s


################################################################################
# Installation
#

Installing TopoChains...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [61cb6e9c] + TopoChains v0.1.1
    Updating `~/.julia/environments/v1.12/Manifest.toml`
⌅ [d9f16b24] + Functors v0.2.8
  [1914dd2f] + MacroTools v0.5.16
  [61cb6e9c] + TopoChains v0.1.1
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.54s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling packages...
   4010.6 ms  ✓ NaNMath
   5819.5 ms  ✓ FixedPointNumbers
    987.6 ms  ✓ Functors
   1071.0 ms  ✓ GZip
   1078.2 ms  ✓ Requires
    737.3 ms  ✓ Adapt
   1250.3 ms  ✓ DiffRules
   1135.8 ms  ✓ ZipFile
   1512.6 ms  ✓ Juno
   6536.5 ms  ✓ SpecialFunctions
  12334.6 ms  ✓ ColorTypes
   4408.2 ms  ✓ TopoChains
   2086.8 ms  ✓ NNlib
  18555.5 ms  ✓ ForwardDiff
   5636.7 ms  ✓ Colors
              ✗ Flux
  15 dependencies successfully precompiled in 78 seconds. 59 already precompiled.
  24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 27 dependents of these packages may trigger further precompilation to work with the unexpected versions.
  1 dependency had output during precompilation:
┌ Requires
│  ┌ Warning: `@get!(dict, key, default)` at /home/pkgeval/.julia/packages/Requires/9Jse8/src/require.jl:11 is deprecated, use `get!(()->default, dict, key)` instead.
│  └ @ Base deprecated.jl:389
└  

ERROR: LoadError: The following 1 direct dependency failed to precompile:

Flux 

Failed to precompile Flux [587475ba-b771-5e3f-ad9e-33799f191a9c] to "/home/pkgeval/.julia/compiled/v1.12/Flux/jl_KaaART".
ERROR: LoadError: UndefVarError: `Printf` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty(x::Module, f::Symbol)
    @ Base ./Base_compiler.jl:47
  [2] top-level scope
    @ ~/.julia/packages/Flux/jbpWo/src/tracker/scalar.jl:42
  [3] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
  [4] top-level scope
    @ ~/.julia/packages/Flux/jbpWo/src/tracker/Tracker.jl:71
  [5] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
  [6] top-level scope
    @ ~/.julia/packages/Flux/jbpWo/src/Flux.jl:14
  [7] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3027
  [9] top-level scope
    @ stdin:5
 [10] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2873
 [12] include_string
    @ ./loading.jl:2883 [inlined]
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [14] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/tracker/scalar.jl:42
in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/tracker/Tracker.jl:1
in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/Flux.jl:1
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:34

Precompilation failed after 98.2s



################################################################################
# Testing
#

     Testing TopoChains
      Status `/tmp/jl_s7TbfI/Project.toml`
⌃ [587475ba] Flux v0.6.6
⌅ [d9f16b24] Functors v0.2.8
  [1914dd2f] MacroTools v0.5.16
  [61cb6e9c] TopoChains v0.1.1
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_s7TbfI/Manifest.toml`
⌅ [1520ce14] AbstractTrees v0.2.1
⌅ [79e6a3ab] Adapt v0.3.1
⌅ [3da002f7] ColorTypes v0.8.1
⌅ [5ae59095] Colors v0.9.6
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [9a962f9c] DataAPI v1.16.0
⌅ [864edb3b] DataStructures v0.18.22
  [163ba53b] DiffResults v1.1.0
⌅ [b552c78f] DiffRules v0.0.10
  [ffbed154] DocStringExtensions v0.9.5
⌅ [53c48c17] FixedPointNumbers v0.6.1
⌃ [587475ba] Flux v0.6.6
⌅ [f6369f11] ForwardDiff v0.10.18
⌅ [d9f16b24] Functors v0.2.8
⌅ [92fee26a] GZip v0.5.2
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.8.0
⌅ [e5e0dc1b] Juno v0.7.2
⌅ [2ab3a3ac] LogExpFunctions v0.3.29
  [1914dd2f] MacroTools v0.5.16
  [e89f7d12] Media v0.5.0
  [e1d29d7a] Missings v1.2.0
⌅ [872c559c] NNlib v0.5.0
⌅ [77ba4419] NaNMath v0.3.7
⌅ [bac558e1] OrderedCollections v1.8.2
  [aea7be01] PrecompileTools v1.3.4
  [21216c6a] Preferences v1.5.2
⌅ [189a3867] Reexport v0.2.0
⌅ [ae029012] Requires v0.5.2
  [a2af1166] SortingAlgorithms v1.2.2
⌅ [276daf66] SpecialFunctions v0.10.3
  [90137ffa] StaticArrays v1.9.18
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
⌅ [2913bbd2] StatsBase v0.33.21
  [61cb6e9c] TopoChains v0.1.1
⌅ [a5390f91] ZipFile v0.7.0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.12.1
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.15.0+0
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.11.4
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.5.6+0
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
[ Info: Test FUNCTOPO
[ Info: Test TOPOCHAIN
Precompiling packages...
Info Given Flux was explicitly requested, output will be shown live 
ERROR: LoadError: UndefVarError: `Printf` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty(x::Module, f::Symbol)
    @ Base ./Base_compiler.jl:47
  [2] top-level scope
    @ ~/.julia/packages/Flux/jbpWo/src/tracker/scalar.jl:42
  [3] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
  [4] top-level scope
    @ ~/.julia/packages/Flux/jbpWo/src/tracker/Tracker.jl:71
  [5] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
  [6] top-level scope
    @ ~/.julia/packages/Flux/jbpWo/src/Flux.jl:14
  [7] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3027
  [9] top-level scope
    @ stdin:5
 [10] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2873
 [12] include_string
    @ ./loading.jl:2883 [inlined]
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [14] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/tracker/scalar.jl:42
in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/tracker/Tracker.jl:1
in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/Flux.jl:1
in expression starting at stdin:5
              ✗ Flux
  0 dependencies successfully precompiled in 8 seconds. 72 already precompiled.
  9 dependencies precompiled but different versions are currently loaded (Base64, InteractiveUtils, JuliaSyntaxHighlighting, Logging, MacroTools, Markdown, Serialization, StyledStrings and Test). Restart julia to access the new versions. Otherwise, 20 dependents of these packages may trigger further precompilation to work with the unexpected versions.

TopoChains: Error During Test at /home/pkgeval/.julia/packages/TopoChains/SgTpE/test/runtests.jl:9
  Got exception outside of a @test
  LoadError: The following 1 direct dependency failed to precompile:
  
  Flux 
  
  Failed to precompile Flux [587475ba-b771-5e3f-ad9e-33799f191a9c] to "/home/pkgeval/.julia/compiled/v1.12/Flux/jl_N1dint".
  ERROR: LoadError: UndefVarError: `Printf` not defined in `Base`
  Suggestion: check for spelling errors or missing imports.
  Stacktrace:
    [1] getproperty(x::Module, f::Symbol)
      @ Base ./Base_compiler.jl:47
    [2] top-level scope
      @ ~/.julia/packages/Flux/jbpWo/src/tracker/scalar.jl:42
    [3] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:307
    [4] top-level scope
      @ ~/.julia/packages/Flux/jbpWo/src/tracker/Tracker.jl:71
    [5] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:307
    [6] top-level scope
      @ ~/.julia/packages/Flux/jbpWo/src/Flux.jl:14
    [7] include(mod::Module, _path::String)
      @ Base ./Base.jl:306
    [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
      @ Base ./loading.jl:3027
    [9] top-level scope
      @ stdin:5
   [10] eval(m::Module, e::Any)
      @ Core ./boot.jl:489
   [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
      @ Base ./loading.jl:2873
   [12] include_string
      @ ./loading.jl:2883 [inlined]
   [13] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:315
   [14] _start()
      @ Base ./client.jl:550
  in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/tracker/scalar.jl:42
  in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/tracker/Tracker.jl:1
  in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/Flux.jl:1
  in expression starting at stdin:
  in expression starting at /home/pkgeval/.julia/packages/TopoChains/SgTpE/test/test_topochain.jl:1
Test Summary: | Pass  Error  Total   Time
TopoChains    |    9      1     10  19.8s
  FuncTopo    |    9             9   9.5s
RNG of the outermost testset: Random.Xoshiro(0x3487c98d52f1cf25, 0x922f4a2a1d0c0542, 0xc1cfbe77f7cfd92c, 0x3515ba19db5cfdbc, 0x27bc771880b00ceb)
ERROR: LoadError: Some tests did not pass: 9 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/TopoChains/SgTpE/test/runtests.jl:9

Testing failed after 34.33s

ERROR: LoadError: Package TopoChains errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:317
 [12] _start()
    @ Base ./client.jl:550
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 162.1s: package fails to precompile