Package evaluation to test SpatialJackknife on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T10:21:56.819


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.12`

Set-up completed after 8.51s


################################################################################
# Installation
#

Installing SpatialJackknife...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [e2fa44a5] + SpatialJackknife v1.0.1
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [e2fa44a5] + SpatialJackknife v1.0.1
  [10745b16] + Statistics v1.11.1
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [8dfed614] + Test v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 1.36s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling packages...
              ✗ SpatialJackknife
  0 dependencies successfully precompiled in 4 seconds. 23 already precompiled.
  8 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings and TOML). Restart julia to access the new versions. Otherwise, 8 dependents of these packages may trigger further precompilation to work with the unexpected versions.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

SpatialJackknife 

Failed to precompile SpatialJackknife [e2fa44a5-09d5-5fa2-a080-aa0766578c8a] to "/home/pkgeval/.julia/compiled/v1.12/SpatialJackknife/jl_c2Ld7J".
ERROR: LoadError: ArgumentError: Package SpatialJackknife does not have NearestNeighbors in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /tmp/jl_n3p5Bo/Manifest.toml
    /home/pkgeval/.julia/environments/v1.12/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have SpatialJackknife checked out for development and have
  added NearestNeighbors as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with SpatialJackknife
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2407 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2387
  [4] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2363
  [5] top-level scope
    @ ~/.julia/packages/SpatialJackknife/HyX8b/src/SpatialJackknife.jl:5
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3027
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2873
 [11] include_string
    @ ./loading.jl:2883 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [13] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/SpatialJackknife/HyX8b/src/SpatialJackknife.jl:1
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:34

Precompilation failed after 18.26s



################################################################################
# Testing
#

     Testing SpatialJackknife
      Status `/tmp/jl_qMTxu0/Project.toml`
  [b4f34e82] Distances v0.10.12
  [b8a86587] NearestNeighbors v0.4.27
  [e2fa44a5] SpatialJackknife v1.0.1
  [10745b16] Statistics v1.11.1
  [37e2e46d] LinearAlgebra v1.12.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_qMTxu0/Manifest.toml`
  [1520ce14] AbstractTrees v0.4.5
  [b4f34e82] Distances v0.10.12
  [b8a86587] NearestNeighbors v0.4.27
  [aea7be01] PrecompileTools v1.3.4
  [21216c6a] Preferences v1.5.2
  [e2fa44a5] SpatialJackknife v1.0.1
  [90137ffa] StaticArrays v1.9.18
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
     Testing Running tests...
Precompiling packages...
Info Given SpatialJackknife was explicitly requested, output will be shown live 
ERROR: LoadError: ArgumentError: Package SpatialJackknife does not have NearestNeighbors in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /tmp/jl_qMTxu0/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have SpatialJackknife checked out for development and have
  added NearestNeighbors as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with SpatialJackknife
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2407 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2387
  [4] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2363
  [5] top-level scope
    @ ~/.julia/packages/SpatialJackknife/HyX8b/src/SpatialJackknife.jl:5
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3027
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2873
 [11] include_string
    @ ./loading.jl:2883 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [13] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/SpatialJackknife/HyX8b/src/SpatialJackknife.jl:1
in expression starting at stdin:5
              ✗ SpatialJackknife
  0 dependencies successfully precompiled in 4 seconds. 9 already precompiled.
  1 dependency precompiled but a different version is currently loaded (Statistics). Restart julia to access the new version. Otherwise, 1 dependent of this package may trigger further precompilation to work with the unexpected version.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

SpatialJackknife 

Failed to precompile SpatialJackknife [e2fa44a5-09d5-5fa2-a080-aa0766578c8a] to "/home/pkgeval/.julia/compiled/v1.12/SpatialJackknife/jl_WEwao3".
ERROR: LoadError: ArgumentError: Package SpatialJackknife does not have NearestNeighbors in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /tmp/jl_qMTxu0/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have SpatialJackknife checked out for development and have
  added NearestNeighbors as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with SpatialJackknife
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2407 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2387
  [4] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2363
  [5] top-level scope
    @ ~/.julia/packages/SpatialJackknife/HyX8b/src/SpatialJackknife.jl:5
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3027
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2873
 [11] include_string
    @ ./loading.jl:2883 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [13] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/SpatialJackknife/HyX8b/src/SpatialJackknife.jl:1
in expression starting at stdin:
in expression starting at /home/pkgeval/.julia/packages/SpatialJackknife/HyX8b/test/runtests.jl:1

Testing failed after 11.01s

ERROR: LoadError: Package SpatialJackknife errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:317
 [12] _start()
    @ Base ./client.jl:550
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 54.0s: package is missing a package dependency