Package evaluation to test SIRUS on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T02:24:17.372 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.52s ################################################################################ # Installation # Installing SIRUS... Resolving package versions... Installed GPUArraysCore ─────────────── v0.2.0 Installed Calculus ──────────────────── v0.5.2 Installed Crayons ───────────────────── v4.1.1 Installed ScientificTypesBase ───────── v3.1.0 Installed MLCore ────────────────────── v1.0.2 Installed DiffRules ─────────────────── v1.16.0 Installed IrrationalConstants ───────── v0.2.6 Installed ColorTypes ────────────────── v0.12.1 Installed Adapt ─────────────────────── v4.6.1 Installed ShowCases ─────────────────── v0.1.0 Installed StatisticalMeasuresBase ───── v0.1.4 Installed CategoricalDistributions ──── v0.2.2 Installed Rmath ─────────────────────── v0.9.0 Installed MLJModelInterface ─────────── v1.12.1 Installed HypergeometricFunctions ───── v0.3.28 Installed StatsFuns ─────────────────── v2.2.0 Installed PtrArrays ─────────────────── v1.4.0 Installed Preferences ───────────────── v1.5.2 Installed TableTraits ───────────────── v1.0.1 Installed DiffResults ───────────────── v1.1.0 Installed LinearMaps ────────────────── v3.11.4 Installed PrettyTables ──────────────── v3.3.2 Installed StatisticalTraits ─────────── v3.5.0 Installed MLJLinearModels ───────────── v0.10.1 Installed ADTypes ───────────────────── v1.22.0 Installed NNlib ─────────────────────── v0.9.36 Installed PositiveFactorizations ────── v0.2.4 Installed SpecialFunctions ──────────── v2.8.0 Installed Tables ────────────────────── v1.12.1 Installed HashArrayMappedTries ──────── v0.2.0 Installed CategoricalArrays ─────────── v1.1.1 Installed DataAPI ───────────────────── v1.16.0 Installed PDMats ────────────────────── v0.11.37 Installed Setfield ──────────────────── v1.1.2 Installed Optim ─────────────────────── v1.13.3 Installed RecipesBase ───────────────── v1.3.4 Installed FixedPointNumbers ─────────── v0.8.6 Installed InlineStrings ─────────────── v1.4.5 Installed ScientificTypes ───────────── v3.3.0 Installed LearnAPI ──────────────────── v2.0.1 Installed JLLWrappers ───────────────── v1.8.0 Installed IterativeSolvers ──────────── v0.9.4 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed NaNMath ───────────────────── v1.1.4 Installed StaticArrays ──────────────── v1.9.18 Installed ProgressMeter ─────────────── v1.11.0 Installed StaticArraysCore ──────────── v1.4.4 Installed Measurements ──────────────── v2.14.1 Installed MLJBase ───────────────────── v1.13.1 Installed ConstructionBase ──────────── v1.6.0 Installed DataValueInterfaces ───────── v1.0.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed AbstractTrees ─────────────── v0.4.5 Installed OrderedCollections ────────── v1.8.2 Installed EnumX ─────────────────────── v1.0.7 Installed ScopedValues ──────────────── v1.6.2 Installed PrecompileTools ───────────── v1.3.4 Installed NLSolversBase ─────────────── v7.10.0 Installed InvertedIndices ───────────── v1.3.1 Installed DelimitedFiles ────────────── v1.9.1 Installed ArrayInterface ────────────── v7.25.0 Installed FillArrays ────────────────── v1.16.0 Installed ForwardDiff ───────────────── v1.4.1 Installed SIRUS ─────────────────────── v3.0.0 Installed ChainRulesCore ────────────── v1.26.1 Installed Reexport ──────────────────── v1.2.2 Installed QuadGK ────────────────────── v2.11.3 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed LineSearches ──────────────── v7.5.1 Installed Statistics ────────────────── v1.11.1 Installed DataStructures ────────────── v0.19.5 Installed CommonSubexpressions ──────── v0.3.1 Installed LogExpFunctions ───────────── v1.0.1 Installed Requires ──────────────────── v1.3.1 Installed ComputationalResources ────── v0.3.2 Installed AliasTables ───────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed StatsAPI ──────────────────── v1.8.0 Installed MLUtils ───────────────────── v0.4.9 Installed MacroTools ────────────────── v0.5.16 Installed Compat ────────────────────── v4.18.1 Installed KernelAbstractions ────────── v0.9.41 Installed UnPack ────────────────────── v1.0.2 Installed Parameters ────────────────── v0.12.3 Installed Distributions ─────────────── v0.25.127 Installed SimpleTraits ──────────────── v0.9.6 Installed Missings ──────────────────── v1.2.0 Installed UnsafeAtomics ─────────────── v0.3.1 Installed StringManipulation ────────── v0.4.4 Installed SortingAlgorithms ─────────── v1.2.2 Installed StatsBase ─────────────────── v0.34.12 Installed Atomix ────────────────────── v1.1.3 Installed DocStringExtensions ───────── v0.9.5 Installed FiniteDiff ────────────────── v2.31.0 Installed DifferentiationInterface ──── v0.7.18 Installing 2 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Updating `~/.julia/environments/v1.12/Project.toml` [cdeec39e] + SIRUS v3.0.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.25.0 [a9b6321e] + Atomix v1.1.3 [49dc2e85] + Calculus v0.5.2 [324d7699] + CategoricalArrays v1.1.1 [af321ab8] + CategoricalDistributions v0.2.2 [d360d2e6] + ChainRulesCore v1.26.1 [3da002f7] + ColorTypes v0.12.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.31.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [f6369f11] + ForwardDiff v1.4.1 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [63c18a36] + KernelAbstractions v0.9.41 [b964fa9f] + LaTeXStrings v1.4.0 [92ad9a40] + LearnAPI v2.0.1 ⌃ [d3d80556] + LineSearches v7.5.1 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v1.0.1 [c2834f40] + MLCore v1.0.2 [a7f614a8] + MLJBase v1.13.1 [6ee0df7b] + MLJLinearModels v0.10.1 [e80e1ace] + MLJModelInterface v1.12.1 [f1d291b0] + MLUtils v0.4.9 [1914dd2f] + MacroTools v0.5.16 [eff96d63] + Measurements v2.14.1 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [872c559c] + NNlib v0.9.36 [77ba4419] + NaNMath v1.1.4 ⌅ [429524aa] + Optim v1.13.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 ⌅ [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [cdeec39e] + SIRUS v3.0.0 [321657f4] + ScientificTypes v3.3.0 [30f210dd] + ScientificTypesBase v3.1.0 [7e506255] + ScopedValues v1.6.2 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [c062fc1d] + StatisticalMeasuresBase v0.1.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 13.05s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4230.6 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling package dependencies... Precompiling packages... 848.6 ms ✓ JLLWrappers 1117.5 ms ✓ CUDA_Driver_jll 4581.2 ms ✓ CUDA_Runtime_jll 3 dependencies successfully precompiled in 7 seconds. 28 already precompiled. 3 dependencies precompiled but different versions are currently loaded (Dates, Printf and TOML). Restart julia to access the new versions. Otherwise, 7 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1510.5 ms ✓ Calculus 906.1 ms ✓ LaTeXStrings 930.3 ms ✓ PositiveFactorizations 3251.0 ms ✓ LinearMaps 1045.7 ms ✓ Glob 742.8 ms ✓ IteratorInterfaceExtensions 3977.8 ms ✓ UnsafeAtomics 1033.2 ms ✓ WorkerUtilities 904.0 ms ✓ TensorCore 841.9 ms ✓ StatsAPI 1491.3 ms ✓ ADTypes 970.8 ms ✓ ChunkCodecCore 3595.9 ms ✓ CEnum 1224.2 ms ✓ ANSIColoredPrinters 1713.4 ms ✓ OffsetArrays 861.8 ms ✓ UnPack 2095.3 ms ✓ FillArrays 1134.4 ms ✓ Statistics 4267.8 ms ✓ ShowCases 7568.7 ms ✓ MacroTools 818.1 ms ✓ WinReg 941.1 ms ✓ ManualMemory 859.8 ms ✓ ShiftedArrays 4446.3 ms ✓ OrderedCollections 753.6 ms ✓ DataValueInterfaces 909.0 ms ✓ EnumX 949.0 ms ✓ StableRNGs 790.7 ms ✓ Reexport 754.2 ms ✓ SIMDTypes 1112.6 ms ✓ DocStringExtensions 1781.0 ms ✓ InlineStrings 1098.5 ms ✓ AbstractTrees 5136.4 ms ✓ IrrationalConstants 1286.4 ms ✓ URIs 789.1 ms ✓ SimpleBufferStream 818.1 ms ✓ PtrArrays 1260.4 ms ✓ TranscodingStreams 930.1 ms ✓ HashArrayMappedTries 3881.3 ms ✓ LazyModules 3804.1 ms ✓ NaNMath 971.0 ms ✓ DelimitedFiles 908.7 ms ✓ LazilyInitializedFields 859.6 ms ✓ InvertedIndices 844.8 ms ✓ IfElse 4227.1 ms ✓ ConstructionBase 901.9 ms ✓ Adapt 786.3 ms ✓ CommonWorldInvalidations 859.8 ms ✓ DataAPI 779.7 ms ✓ PackageExtensionCompat 5243.7 ms ✓ Crayons 1055.8 ms ✓ ComputationalResources 911.9 ms ✓ BitFlags 907.6 ms ✓ SciMLPublic 1004.8 ms ✓ StaticArraysCore 1023.8 ms ✓ MappedArrays 1725.5 ms ✓ ConcurrentUtilities 1850.3 ms ✓ PDMats 1193.2 ms ✓ Requires 809.2 ms ✓ IOCapture 1152.9 ms ✓ GZip 1164.6 ms ✓ ZipFile 3841.8 ms ✓ BFloat16s 1816.6 ms ✓ ProgressMeter 2217.8 ms ✓ SentinelArrays 4571.7 ms ✓ StructTypes 40206.0 ms ✓ Unitful 1103.9 ms ✓ LoggingExtras 904.3 ms ✓ Scratch 1863.5 ms ✓ CpuId 4033.4 ms ✓ Compat 1519.8 ms ✓ ScientificTypesBase 1593.3 ms ✓ MPIPreferences 1551.9 ms ✓ LearnAPI 869.4 ms ✓ InternedStrings 1713.2 ms ✓ ExceptionUnwrapping 1167.8 ms ✓ dlfcn_win32_jll 1443.0 ms ✓ aws_c_common_jll 1426.7 ms ✓ LLVMOpenMP_jll 1437.7 ms ✓ Xorg_libpciaccess_jll 1459.6 ms ✓ Chemfiles_jll 1479.0 ms ✓ libaec_jll 1394.3 ms ✓ s2n_tls_jll 1432.8 ms ✓ Rmath_jll 1372.4 ms ✓ MbedTLS_jll 1438.2 ms ✓ Zstd_jll 1425.3 ms ✓ Expat_jll 1466.3 ms ✓ OpenSSH_jll 1105.1 ms ✓ MicrosoftMPI_jll 1444.3 ms ✓ Libiconv_jll 1392.9 ms ✓ Git_LFS_jll 1383.7 ms ✓ OpenSpecFun_jll 3094.4 ms ✓ RecipesBase 3399.7 ms ✓ StringManipulation 1254.4 ms ✓ Measurements 2024.4 ms ✓ LinearMaps → LinearMapsSparseArraysExt 742.5 ms ✓ TableTraits 980.1 ms ✓ Atomix 4711.3 ms ✓ DifferentiationInterface 987.9 ms ✓ ChunkCodecLibZlib 850.9 ms ✓ StackViews 935.2 ms ✓ PaddedViews 1513.6 ms ✓ FillArrays → FillArraysSparseArraysExt 6424.9 ms ✓ FixedPointNumbers 978.5 ms ✓ ScikitLearnBase 1388.8 ms ✓ Statistics → SparseArraysExt 790.0 ms ✓ LinearMaps → LinearMapsStatisticsExt 872.9 ms ✓ FillArrays → FillArraysStatisticsExt 1550.1 ms ✓ CommonSubexpressions 2994.3 ms ✓ SimpleTraits 4873.6 ms ✓ ThreadingUtilities 3613.0 ms ✓ DataStructures 999.8 ms ✓ Parameters 979.6 ms ✓ InlineStrings → ParsersExt 1891.8 ms ✓ MarkdownAST 1257.5 ms ✓ LogExpFunctions 961.9 ms ✓ AliasTables 954.8 ms ✓ CodecZlib 889.9 ms ✓ ScopedValues 5615.6 ms ✓ RegistryInstances 814.0 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 820.7 ms ✓ ADTypes → ADTypesConstructionBaseExt 1320.8 ms ✓ Adapt → AdaptSparseArraysExt 3933.6 ms ✓ ArrayInterface 1237.2 ms ✓ GPUArraysCore 868.7 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1040.7 ms ✓ PooledArrays 3793.6 ms ✓ Missings 947.4 ms ✓ StridedViews 4681.6 ms ✓ OpenSSL 4523.7 ms ✓ Static 847.1 ms ✓ DiffResults 830.2 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 17631.7 ms ✓ StaticArrays 1460.7 ms ✓ FillArrays → FillArraysPDMatsExt 9389.8 ms ✓ FileIO 15142.7 ms ✓ JSON3 1876.4 ms ✓ Unitful → ConstructionBaseUnitfulExt 1730.3 ms ✓ Unitful → NaNMathExt 1939.1 ms ✓ Unitful → PrintfExt 882.2 ms ✓ Compat → CompatLinearAlgebraExt 1398.2 ms ✓ StatisticalTraits 4389.3 ms ✓ MPItrampoline_jll 1338.6 ms ✓ aws_checksums_jll 1344.1 ms ✓ aws_c_cal_jll 1406.7 ms ✓ aws_c_compression_jll 1442.8 ms ✓ aws_c_sdkutils_jll 1412.6 ms ✓ XGBoost_jll 4706.9 ms ✓ XGBoost_GPU_jll 1583.0 ms ✓ Rmath 2210.9 ms ✓ MbedTLS 1235.4 ms ✓ ChunkCodecLibZstd 1141.0 ms ✓ StringEncodings 1466.3 ms ✓ XML2_jll 1442.6 ms ✓ Git_jll 6244.5 ms ✓ IterativeSolvers 1888.8 ms ✓ Measurements → MeasurementsUnitfulExt 1411.4 ms ✓ Measurements → MeasurementsRecipesBaseExt 913.2 ms ✓ StructUtils → StructUtilsMeasurementsExt 4820.2 ms ✓ Tables 1375.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1014.6 ms ✓ MosaicViews 5283.8 ms ✓ ColorTypes 2026.4 ms ✓ DecisionTree 1077.6 ms ✓ SortingAlgorithms 5074.4 ms ✓ QuadGK 2428.6 ms ✓ WeakRefStrings 5994.9 ms ✓ SpecialFunctions 3109.1 ms ✓ Setfield 1346.3 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 789.5 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 807.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 799.9 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 759.7 ms ✓ StridedViews → StridedViewsPtrArraysExt 871.1 ms ✓ BitTwiddlingConvenienceFunctions 2984.9 ms ✓ CPUSummary 1432.7 ms ✓ StaticArrays → StaticArraysStatisticsExt 1543.1 ms ✓ FillArrays → FillArraysStaticArraysExt 1470.9 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1417.5 ms ✓ Adapt → AdaptStaticArraysExt 1445.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 5287.7 ms ✓ NPZ 9728.8 ms ✓ UnitfulAtomic 6281.4 ms ✓ PeriodicTable 2491.2 ms ✓ FilePathsBase 5437.6 ms ✓ ChainRulesCore 6438.2 ms ✓ CategoricalArrays 9223.7 ms ✓ StaticArrayInterface 2929.8 ms ✓ MLJModelInterface 1370.4 ms ✓ aws_c_io_jll 32716.2 ms ✓ HTTP 54497.1 ms ✓ JLD2 8000.8 ms ✓ Pickle 1548.1 ms ✓ Hwloc_jll 918.1 ms ✓ Git 883.0 ms ✓ StructUtils → StructUtilsTablesExt 48474.1 ms ✓ PrettyTables 3711.9 ms ✓ MLCore 6665.5 ms ✓ ColorVectorSpace 1268.7 ms ✓ ColorTypes → StyledStringsExt 9501.0 ms ✓ Colors 7518.0 ms ✓ StatsBase 2248.1 ms ✓ HypergeometricFunctions 986.0 ms ✓ Measurements → MeasurementsSpecialFunctionsExt 1279.7 ms ✓ DiffRules 1333.1 ms ✓ FiniteDiff 1813.1 ms ✓ PolyesterWeave 11526.9 ms ✓ KernelAbstractions 6466.8 ms ✓ AtomsBase 1548.7 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3206.2 ms ✓ FilePathsBase → FilePathsBaseTestExt 4127.9 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 884.5 ms ✓ LinearMaps → LinearMapsChainRulesCoreExt 954.6 ms ✓ ADTypes → ADTypesChainRulesCoreExt 1007.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3209.3 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 895.1 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 4460.4 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 4161.7 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1303.0 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 1097.5 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 3885.5 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 1022.0 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 1479.6 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1031.8 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1120.6 ms ✓ CloseOpenIntervals 1446.2 ms ✓ LayoutPointers 7468.2 ms ✓ MLJDecisionTreeInterface 1426.9 ms ✓ aws_c_http_jll 5883.8 ms ✓ DataDeps 5954.9 ms ✓ FileIO → HTTPExt 5703.1 ms ✓ JLD2 → UnPackExt 4315.3 ms ✓ OpenMPI_jll 4195.2 ms ✓ MPIABI_jll 1494.6 ms ✓ MPICH_jll 57647.8 ms ✓ Documenter 92403.8 ms ✓ DataFrames 1293.3 ms ✓ ColorVectorSpace → SpecialFunctionsExt 40896.9 ms ✓ ImageCore 9046.0 ms ✓ ColorSchemes 1499.3 ms ✓ PDMats → StatsBaseExt 1609.9 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 5113.2 ms ✓ StatsFuns 9772.1 ms ✓ ForwardDiff 1321.9 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1326.4 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 969.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 3768.9 ms ✓ KernelAbstractions → SparseArraysExt 2173.7 ms ✓ KernelAbstractions → LinearAlgebraExt 6329.4 ms ✓ Chemfiles 30299.5 ms ✓ CSV 1906.2 ms ✓ StrideArraysCore 1294.7 ms ✓ aws_c_auth_jll 3310.6 ms ✓ mpif_jll 3372.3 ms ✓ ImageBase 3480.2 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 4804.2 ms ✓ StatsModels 9957.2 ms ✓ Distributions 1673.3 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1983.3 ms ✓ Unitful → ForwardDiffExt 4212.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 14666.0 ms ✓ NNlib 2233.4 ms ✓ Polyester 1435.1 ms ✓ aws_c_s3_jll 7463.3 ms ✓ ImageShow 3475.2 ms ✓ Distributions → DistributionsTestExt 5812.1 ms ✓ Distributions → DistributionsChainRulesCoreExt 9204.3 ms ✓ ScientificTypes 2169.6 ms ✓ NLSolversBase 2871.4 ms ✓ NNlib → NNlibSpecialFunctionsExt 2965.3 ms ✓ NNlib → NNlibForwardDiffExt 10938.3 ms ✓ MLUtils 3837.1 ms ✓ SparseMatricesCSR 1792.6 ms ✓ HDF5_jll 12719.4 ms ✓ CategoricalDistributions 4997.3 ms ✓ LineSearches 21096.2 ms ✓ StatisticalMeasuresBase 6966.2 ms ✓ XGBoost 14394.9 ms ✓ HDF5 6424.6 ms ✓ Optim 45808.1 ms ✓ StatisticalMeasures 16089.1 ms ✓ MLJBase 8510.1 ms ✓ MLJXGBoostInterface 5039.4 ms ✓ MAT 8384.6 ms ✓ MLJLinearModels ✗ StatisticalMeasures → ScientificTypesExt 15763.2 ms ✓ MLJTestInterface ✗ MLJBase → DefaultMeasuresExt 33084.7 ms ✓ MLDatasets 16626.8 ms ✓ SIRUS 287 dependencies successfully precompiled in 1338 seconds. 50 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 201 dependents of these packages may trigger further precompilation to work with the unexpected versions. ERROR: LoadError: The following 2 direct dependencies failed to precompile: MLJBase → DefaultMeasuresExt Failed to precompile DefaultMeasuresExt [fe5f6ac0-33d3-5066-8083-2d519bb7c971] to "/home/pkgeval/.julia/compiled/v1.12/DefaultMeasuresExt/jl_RL2L4U". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] top-level scope @ ~/.julia/packages/MLJBase/DCbte/ext/DefaultMeasuresExt.jl:5 [12] include(mod::Module, _path::String) @ Base ./Base.jl:306 [13] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [14] top-level scope @ stdin:5 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [17] include_string @ ./loading.jl:2883 [inlined] [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [19] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJBase/DCbte/ext/DefaultMeasuresExt.jl:1 in expression starting at stdin:5 StatisticalMeasures → ScientificTypesExt Failed to precompile ScientificTypesExt [106586fb-0781-5151-be1c-b45c40028622] to "/home/pkgeval/.julia/compiled/v1.12/ScientificTypesExt/jl_Q2dsvB". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] top-level scope @ ~/.julia/packages/StatisticalMeasures/NyjcA/ext/ScientificTypesExt.jl:4 [12] include(mod::Module, _path::String) @ Base ./Base.jl:306 [13] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [14] top-level scope @ stdin:5 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [17] include_string @ ./loading.jl:2883 [inlined] [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [19] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/StatisticalMeasures/NyjcA/ext/ScientificTypesExt.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 1491.56s ################################################################################ # Testing # Testing SIRUS Status `/tmp/jl_reAzxo/Project.toml` [336ed68f] CSV v0.10.16 [324d7699] CategoricalArrays v1.1.1 [124859b0] DataDeps v0.7.14 [a93c6f00] DataFrames v1.8.2 [7806a523] DecisionTree v0.12.4 [e30172f5] Documenter v1.17.0 [eb30cadb] MLDatasets v0.7.21 [a7f614a8] MLJBase v1.13.1 ⌅ [c6f25543] MLJDecisionTreeInterface v0.4.4 [6ee0df7b] MLJLinearModels v0.10.1 [e80e1ace] MLJModelInterface v1.12.1 [72560011] MLJTestInterface v0.2.9 [54119dfa] MLJXGBoostInterface v0.3.13 [6f49c342] RCall v0.14.13 [cdeec39e] SIRUS v3.0.0 [860ef19b] StableRNGs v1.0.4 [a19d573c] StatisticalMeasures v0.3.6 [10745b16] Statistics v1.11.1 [bd369af6] Tables v1.12.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_reAzxo/Manifest.toml` Precompiling packages... 1296.3 ms ✓ Preferences 969.0 ms ✓ JLLWrappers 2995.9 ms ✓ CUDA_Driver_jll 3 dependencies successfully precompiled in 5 seconds. 4 already precompiled. 3 dependencies precompiled but different versions are currently loaded (Dates, Printf and TOML). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 6443.0 ms ✓ CUDA_Runtime_jll 1 dependency successfully precompiled in 7 seconds. 30 already precompiled. 3 dependencies precompiled but different versions are currently loaded (Dates, Printf and TOML). Restart julia to access the new versions. Otherwise, 7 dependents of these packages may trigger further precompilation to work with the unexpected versions. 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[ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.1 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.14 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [7806a523] DecisionTree v0.12.4 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.18 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [4e289a0a] EnumX v1.0.7 [460bff9d] ExceptionUnwrapping v0.1.11 [5789e2e9] FileIO v1.19.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.31.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [f6369f11] ForwardDiff v1.4.1 [46192b85] GPUArraysCore v0.2.0 ⌅ [92fee26a] GZip v0.6.2 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.5.0 [f67ccb44] HDF5 v0.17.3 ⌅ [cd3eb016] HTTP v1.11.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v1.0.0 [615f187c] IfElse v0.1.1 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [4e3cecfd] ImageShow v0.3.8 [842dd82b] InlineStrings v1.4.5 [7d512f48] InternedStrings v0.7.0 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.4 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [0f8b85d8] JSON3 v1.14.3 [63c18a36] KernelAbstractions v0.9.41 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [8cdb02fc] LazyModules v0.3.1 [92ad9a40] LearnAPI v2.0.1 ⌃ [d3d80556] LineSearches v7.5.1 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v1.0.1 [e6f89c97] LoggingExtras v1.2.0 ⌅ [23992714] MAT v0.11.5 [c2834f40] MLCore v1.0.2 [eb30cadb] MLDatasets v0.7.21 [a7f614a8] MLJBase 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[3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [12] top-level scope @ ~/.julia/packages/SIRUS/P56zb/test/runtests.jl:1 [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [17] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/SIRUS/P56zb/test/preliminaries.jl:45 in expression starting at /home/pkgeval/.julia/packages/SIRUS/P56zb/test/runtests.jl:1 Testing failed after 82.12s ERROR: LoadError: Package SIRUS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1644.98s: package fails to precompile