Package evaluation to test SIRIUS on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T19:25:50.707 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.05s ################################################################################ # Installation # Installing SIRIUS... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [3581e6f0] + SIRIUS v0.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [ffbed154] + DocStringExtensions v0.9.5 [692b3bcd] + JLLWrappers v1.8.0 [0f8b85d8] + JSON3 v1.14.3 [da04e1cc] + MPI v0.20.26 [3da0fdf6] + MPIPreferences v0.1.12 [51095b67] + OpenBLAS32 v0.1.0 [69de0a69] + Parsers v2.8.6 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [3581e6f0] + SIRIUS v0.1.0 [856f2bd8] + StructTypes v1.11.0 [5f6e5a8a] + COSTA_jll v2.2.2+0 [f5851436] + FFTW_jll v3.3.12+0 ⌅ [1b77fbbe] + GSL_jll v2.7.2+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [e33a78d0] + Hwloc_jll v2.14.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [a56a6d9d] + Libxc_jll v7.0.0+2 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.33+1 ⌅ [fe0851c0] + OpenMPI_jll v4.1.9+0 ⌃ [6b659922] + SIRIUS_jll v7.6.1+0 [8be71ea8] + SpFFT_jll v1.1.2+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [477f73a3] + libaec_jll v1.1.7+0 [ef860afa] + pugixml_jll v1.15.0+0 [ac4a9f1e] + spglib_jll v2.7.0+0 [c0b6e1fa] + spla_jll v1.6.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 14.79s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 5276.4 ms ✓ SpFFT_jll 5333.9 ms ✓ COSTA_jll 5230.3 ms ✓ spla_jll 14248.6 ms ✓ SIRIUS_jll ✗ SIRIUS 4 dependencies successfully precompiled in 61 seconds. 63 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 37 dependents of these packages may trigger further precompilation to work with the unexpected versions. ERROR: LoadError: The following 1 direct dependency failed to precompile: SIRIUS Failed to precompile SIRIUS [3581e6f0-5a2a-4fbf-9499-336905df69aa] to "/home/pkgeval/.julia/compiled/v1.12/SIRIUS/jl_Fvb2t7". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/a8272b4931ee4a7857ac2e4d53ee5152370930a8/lib/libsirius.so" libxc.so.12: cannot open shared object file: No such file or directory Stacktrace: [1] #dlopen#3 @ ./libdl.jl:120 [inlined] [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:119 [3] top-level scope @ ~/.julia/packages/SIRIUS_jll/dM808/src/wrappers/x86_64-linux-gnu-libgfortran5-cxx11-mpi+mpich.jl:19 [4] macro expansion @ ~/.julia/packages/JLLWrappers/Kp7TC/src/products/library_generators.jl:63 [inlined] [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1445 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1433 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1321 [8] _include_from_serialized @ ./loading.jl:1276 [inlined] [9] _tryrequire_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing) @ Base ./loading.jl:2004 [10] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2698 [11] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [12] macro expansion @ ./loading.jl:2422 [inlined] [13] macro expansion @ ./lock.jl:376 [inlined] [14] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [15] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [16] top-level scope @ ~/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:5 [17] include(mod::Module, _path::String) @ Base ./Base.jl:306 [18] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [19] top-level scope @ stdin:5 [20] eval(m::Module, e::Any) @ Core ./boot.jl:489 [21] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [22] include_string @ ./loading.jl:2883 [inlined] [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [24] _start() @ Base ./client.jl:550 during initialization of module SIRIUS_jll in expression starting at /home/pkgeval/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 94.58s ################################################################################ # Testing # Testing SIRIUS Status `/tmp/jl_KBsVEm/Project.toml` [0f8b85d8] JSON3 v1.14.3 [da04e1cc] MPI v0.20.26 [51095b67] OpenBLAS32 v0.1.0 [3581e6f0] SIRIUS v0.1.0 [f8b46487] TestItemRunner v1.1.5 ⌃ [6b659922] SIRIUS_jll v7.6.1+0 [8f399da3] Libdl v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_KBsVEm/Manifest.toml` [ffbed154] DocStringExtensions v0.9.5 [692b3bcd] JLLWrappers v1.8.0 [0f8b85d8] JSON3 v1.14.3 [da04e1cc] MPI v0.20.26 [3da0fdf6] MPIPreferences v0.1.12 [51095b67] OpenBLAS32 v0.1.0 [69de0a69] Parsers v2.8.6 [eebad327] PkgVersion v0.3.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [3581e6f0] SIRIUS v0.1.0 [856f2bd8] StructTypes v1.11.0 [f8b46487] TestItemRunner v1.1.5 [1c621080] TestItems v1.0.0 [5f6e5a8a] COSTA_jll v2.2.2+0 [f5851436] FFTW_jll v3.3.12+0 ⌅ [1b77fbbe] GSL_jll v2.7.2+0 ⌅ [0234f1f7] HDF5_jll v1.14.3+3 [e33a78d0] Hwloc_jll v2.14.0+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 [a56a6d9d] Libxc_jll v7.0.0+2 [b5ada748] MPIABI_jll v0.1.5+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [656ef2d0] OpenBLAS32_jll v0.3.33+1 ⌅ [fe0851c0] OpenMPI_jll v4.1.9+0 ⌃ [6b659922] SIRIUS_jll v7.6.1+0 [8be71ea8] SpFFT_jll v1.1.2+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 [477f73a3] libaec_jll v1.1.7+0 [ef860afa] pugixml_jll v1.15.0+0 [ac4a9f1e] spglib_jll v2.7.0+0 [c0b6e1fa] spla_jll v1.6.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.6+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 1533.2 ms ✓ GSL_jll 1378.5 ms ✓ Libxc_jll 1371.5 ms ✓ pugixml_jll 1584.8 ms ✓ spglib_jll 905.0 ms ✓ OpenBLAS32 4695.7 ms ✓ OpenMPI_jll 4969.6 ms ✓ SpFFT_jll 5264.4 ms ✓ HDF5_jll 5152.8 ms ✓ COSTA_jll 5381.6 ms ✓ spla_jll 5650.4 ms ✓ SIRIUS_jll Info Given SIRIUS was explicitly requested, output will be shown live  ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/a8272b4931ee4a7857ac2e4d53ee5152370930a8/lib/libsirius.so" libxc.so.12: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen(s::String, flags::UInt32)  @ Base.Libc.Libdl ./libdl.jl:119  [3] top-level scope  @ ~/.julia/packages/SIRIUS_jll/dM808/src/wrappers/x86_64-linux-gnu-libgfortran5-cxx11-mpi+mpich.jl:19  [4] macro expansion  @ ~/.julia/packages/JLLWrappers/Kp7TC/src/products/library_generators.jl:63 [inlined]  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1445  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1433  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1321  [8] _include_from_serialized  @ ./loading.jl:1276 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2116  [10] _require_search_from_serialized  @ ./loading.jl:2010 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2628  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2494  [13] macro expansion  @ ./loading.jl:2422 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2387  [16] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2363  [17] top-level scope  @ ~/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:5  [18] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3027  [20] top-level scope  @ stdin:5  [21] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2873  [23] include_string  @ ./loading.jl:2883 [inlined]  [24] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [25] _start()  @ Base ./client.jl:550 during initialization of module SIRIUS_jll in expression starting at /home/pkgeval/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:1 in expression starting at stdin:5 ✗ SIRIUS 11 dependencies successfully precompiled in 46 seconds. 52 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, Serialization, StyledStrings and TOML). Restart julia to access the new versions. Otherwise, 37 dependents of these packages may trigger further precompilation to work with the unexpected versions. Testing SIRIUS SCF #1:: Error During Test at /home/pkgeval/.julia/packages/SIRIUS/ebgHq/test/test1/test_scf.jl:2 Got exception outside of a @test The following 1 direct dependency failed to precompile: SIRIUS Failed to precompile SIRIUS [3581e6f0-5a2a-4fbf-9499-336905df69aa] to "/home/pkgeval/.julia/compiled/v1.12/SIRIUS/jl_o6f2Dc". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/a8272b4931ee4a7857ac2e4d53ee5152370930a8/lib/libsirius.so" libxc.so.12: cannot open shared object file: No such file or directory Stacktrace: [1] #dlopen#3 @ ./libdl.jl:120 [inlined] [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:119 [3] top-level scope @ ~/.julia/packages/SIRIUS_jll/dM808/src/wrappers/x86_64-linux-gnu-libgfortran5-cxx11-mpi+mpich.jl:19 [4] macro expansion @ ~/.julia/packages/JLLWrappers/Kp7TC/src/products/library_generators.jl:63 [inlined] [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1445 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1433 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1321 [8] _include_from_serialized @ ./loading.jl:1276 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [10] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] top-level scope @ ~/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:5 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [23] include_string @ ./loading.jl:2883 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 during initialization of module SIRIUS_jll in expression starting at /home/pkgeval/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:1 in expression starting at stdin: Precompiling packages... Info Given SIRIUS was explicitly requested, output will be shown live  ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/a8272b4931ee4a7857ac2e4d53ee5152370930a8/lib/libsirius.so" libxc.so.12: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen(s::String, flags::UInt32)  @ Base.Libc.Libdl ./libdl.jl:119  [3] top-level scope  @ ~/.julia/packages/SIRIUS_jll/dM808/src/wrappers/x86_64-linux-gnu-libgfortran5-cxx11-mpi+mpich.jl:19  [4] macro expansion  @ ~/.julia/packages/JLLWrappers/Kp7TC/src/products/library_generators.jl:63 [inlined]  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1445  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1433  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1321  [8] _include_from_serialized  @ ./loading.jl:1276 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2116  [10] _require_search_from_serialized  @ ./loading.jl:2010 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2628  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2494  [13] macro expansion  @ ./loading.jl:2422 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2387  [16] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2363  [17] top-level scope  @ ~/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:5  [18] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3027  [20] top-level scope  @ stdin:5  [21] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2873  [23] include_string  @ ./loading.jl:2883 [inlined]  [24] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [25] _start()  @ Base ./client.jl:550 during initialization of module SIRIUS_jll in expression starting at /home/pkgeval/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:1 in expression starting at stdin:5 ✗ SIRIUS 0 dependencies successfully precompiled in 7 seconds. 63 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, Serialization, StyledStrings and TOML). Restart julia to access the new versions. Otherwise, 37 dependents of these packages may trigger further precompilation to work with the unexpected versions. Testing SIRIUS SCF #3:: Error During Test at /home/pkgeval/.julia/packages/SIRIUS/ebgHq/test/test3/test_scf.jl:2 Got exception outside of a @test The following 1 direct dependency failed to precompile: SIRIUS Failed to precompile SIRIUS [3581e6f0-5a2a-4fbf-9499-336905df69aa] to "/home/pkgeval/.julia/compiled/v1.12/SIRIUS/jl_U21HXP". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/a8272b4931ee4a7857ac2e4d53ee5152370930a8/lib/libsirius.so" libxc.so.12: cannot open shared object file: No such file or directory Stacktrace: [1] #dlopen#3 @ ./libdl.jl:120 [inlined] [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:119 [3] top-level scope @ ~/.julia/packages/SIRIUS_jll/dM808/src/wrappers/x86_64-linux-gnu-libgfortran5-cxx11-mpi+mpich.jl:19 [4] macro expansion @ ~/.julia/packages/JLLWrappers/Kp7TC/src/products/library_generators.jl:63 [inlined] [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1445 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1433 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1321 [8] _include_from_serialized @ ./loading.jl:1276 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [10] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] top-level scope @ ~/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:5 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [23] include_string @ ./loading.jl:2883 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 during initialization of module SIRIUS_jll in expression starting at /home/pkgeval/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:1 in expression starting at stdin: Precompiling packages... Info Given SIRIUS was explicitly requested, output will be shown live  ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/a8272b4931ee4a7857ac2e4d53ee5152370930a8/lib/libsirius.so" libxc.so.12: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen(s::String, flags::UInt32)  @ Base.Libc.Libdl ./libdl.jl:119  [3] top-level scope  @ ~/.julia/packages/SIRIUS_jll/dM808/src/wrappers/x86_64-linux-gnu-libgfortran5-cxx11-mpi+mpich.jl:19  [4] macro expansion  @ ~/.julia/packages/JLLWrappers/Kp7TC/src/products/library_generators.jl:63 [inlined]  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1445  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1433  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1321  [8] _include_from_serialized  @ ./loading.jl:1276 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2116  [10] _require_search_from_serialized  @ ./loading.jl:2010 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2628  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2494  [13] macro expansion  @ ./loading.jl:2422 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2387  [16] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2363  [17] top-level scope  @ ~/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:5  [18] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3027  [20] top-level scope  @ stdin:5  [21] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2873  [23] include_string  @ ./loading.jl:2883 [inlined]  [24] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [25] _start()  @ Base ./client.jl:550 during initialization of module SIRIUS_jll in expression starting at /home/pkgeval/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:1 in expression starting at stdin:5 ✗ SIRIUS 0 dependencies successfully precompiled in 8 seconds. 63 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, Serialization, StyledStrings and TOML). Restart julia to access the new versions. Otherwise, 37 dependents of these packages may trigger further precompilation to work with the unexpected versions. Testing SIRIUS SCF #2:: Error During Test at /home/pkgeval/.julia/packages/SIRIUS/ebgHq/test/test2/test_scf.jl:2 Got exception outside of a @test The following 1 direct dependency failed to precompile: SIRIUS Failed to precompile SIRIUS [3581e6f0-5a2a-4fbf-9499-336905df69aa] to "/home/pkgeval/.julia/compiled/v1.12/SIRIUS/jl_yBUGe0". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/a8272b4931ee4a7857ac2e4d53ee5152370930a8/lib/libsirius.so" libxc.so.12: cannot open shared object file: No such file or directory Stacktrace: [1] #dlopen#3 @ ./libdl.jl:120 [inlined] [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:119 [3] top-level scope @ ~/.julia/packages/SIRIUS_jll/dM808/src/wrappers/x86_64-linux-gnu-libgfortran5-cxx11-mpi+mpich.jl:19 [4] macro expansion @ ~/.julia/packages/JLLWrappers/Kp7TC/src/products/library_generators.jl:63 [inlined] [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1445 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1433 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1321 [8] _include_from_serialized @ ./loading.jl:1276 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [10] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] top-level scope @ ~/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:5 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [23] include_string @ ./loading.jl:2883 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 during initialization of module SIRIUS_jll in expression starting at /home/pkgeval/.julia/packages/SIRIUS/ebgHq/src/SIRIUS.jl:1 in expression starting at stdin: Test Summary: | Error Total Time Package | 3 3 1m02.8s test/test1/test_scf.jl | 1 1 47.1s Testing SIRIUS SCF #1: | 1 1 47.0s test/test3/test_scf.jl | 1 1 7.2s Testing SIRIUS SCF #3: | 1 1 7.2s test/test2/test_scf.jl | 1 1 8.5s Testing SIRIUS SCF #2: | 1 1 8.5s ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 3 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SIRIUS/ebgHq/test/runtests_runner.jl:3 ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so --depwarn=yes --check-bounds=yes --pkgimages=existing -g1 --startup-file=no /home/pkgeval/.julia/packages/SIRIUS/ebgHq/test/runtests_runner.jl`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:597 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:512 [3] run(::Cmd) @ Base ./process.jl:509 [4] top-level scope @ ~/.julia/packages/SIRIUS/ebgHq/test/runtests.jl:36 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [6] top-level scope @ none:6 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [9] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/SIRIUS/ebgHq/test/runtests.jl:33 Testing failed after 144.79s ERROR: LoadError: Package SIRIUS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 286.66s: package requires a missing binary dependency