Package evaluation to test SGtSNEpi on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T16:24:16.698 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 10.36s ################################################################################ # Installation # Installing SGtSNEpi... Resolving package versions... Installed Hwloc_jll ───────────── v2.14.0+0 Installed Inflate ─────────────── v0.1.5 Installed SGtSNEpi ────────────── v0.4.0 Installed XML2_jll ────────────── v2.13.9+0 Installed Xorg_libpciaccess_jll ─ v0.19.0+0 Installed ArnoldiMethod ───────── v0.4.0 Installed ColorTypes ──────────── v0.11.5 Installed FixedPointNumbers ───── v0.8.6 Installed Preferences ─────────── v1.5.2 Installed JLLWrappers ─────────── v1.8.0 Installed StaticArrays ────────── v1.9.18 Installed Libiconv_jll ────────── v1.18.0+0 Installed Hwloc ───────────────── v3.3.0 Installed StaticArraysCore ────── v1.4.4 Installed AbstractTrees ───────── v0.4.5 Installed OrderedCollections ──── v1.8.2 Installed NearestNeighbors ────── v0.4.27 Installed sgtsnepi_jll ────────── v3.0.0+0 Installed CEnum ───────────────── v0.5.0 Installed PrecompileTools ─────── v1.3.4 Installed Reexport ────────────── v1.2.2 Installed Statistics ──────────── v1.11.1 Installed DataStructures ──────── v0.19.5 Installed Colors ──────────────── v0.12.11 Installed Graphs ──────────────── v1.14.0 Installed StatsAPI ────────────── v1.8.0 Installed Requires ────────────── v1.3.1 Installed SimpleTraits ────────── v0.9.6 Installed Distances ───────────── v0.10.12 Installed FFTW_jll ────────────── v3.3.12+0 Installed MacroTools ──────────── v0.5.16 Installing 6 artifacts Installed artifact Xorg_libpciaccess 26.2 KiB Installed artifact sgtsnepi 157.9 KiB Installed artifact Hwloc 3.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact FFTW 2.2 MiB Installed artifact XML2 2.5 MiB Updating `~/.julia/environments/v1.12/Project.toml` [e6c19c8d] + SGtSNEpi v0.4.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [ec485272] + ArnoldiMethod v0.4.0 [fa961155] + CEnum v0.5.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [5ae59095] + Colors v0.12.11 [864edb3b] + DataStructures v0.19.5 [b4f34e82] + Distances v0.10.12 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [86223c79] + Graphs v1.14.0 [0e44f5e4] + Hwloc v3.3.0 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.8.0 [1914dd2f] + MacroTools v0.5.16 [b8a86587] + NearestNeighbors v0.4.27 ⌅ [bac558e1] + OrderedCollections v1.8.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [e6c19c8d] + SGtSNEpi v0.4.0 [699a6c99] + SimpleTraits v0.9.6 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [f5851436] + FFTW_jll v3.3.12+0 [e33a78d0] + Hwloc_jll v2.14.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [c2c51ba6] + sgtsnepi_jll v3.0.0+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 10.84s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5167.7 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 1424.2 ms ✓ RangeArrays 1133.9 ms ✓ MuladdMacro 9646.8 ms ✓ BaseDirs 1038.4 ms ✓ AbstractFFTs 848.1 ms ✓ LaTeXStrings 959.2 ms ✓ IndirectArrays 923.4 ms ✓ PolygonOps 835.9 ms ✓ IteratorInterfaceExtensions 1044.2 ms ✓ TensorCore 937.9 ms ✓ StatsAPI 1008.9 ms ✓ Contour 4104.7 ms ✓ CEnum 1798.0 ms ✓ OffsetArrays 1071.3 ms ✓ TriplotBase 2759.7 ms ✓ Format 2570.9 ms ✓ FillArrays 1210.9 ms ✓ IntegerMathUtils 1116.3 ms ✓ InverseFunctions 1323.8 ms ✓ Statistics 1594.3 ms ✓ IterTools 8805.5 ms ✓ MacroTools 4103.5 ms ✓ OrderedCollections 3855.2 ms ✓ Observables 793.2 ms ✓ DataValueInterfaces 903.4 ms ✓ EnumX 1019.4 ms ✓ StableRNGs 876.4 ms ✓ Reexport 1148.9 ms ✓ DocStringExtensions 1219.8 ms ✓ AbstractTrees 6339.4 ms ✓ IrrationalConstants 1411.8 ms ✓ IntervalSets 1161.3 ms ✓ RoundingEmulator 1003.3 ms ✓ PtrArrays 1576.7 ms ✓ TranscodingStreams 3036.0 ms ✓ AdaptivePredicates 3957.7 ms ✓ LazyModules 1032.8 ms ✓ Inflate 4837.3 ms ✓ ConstructionBase 1250.5 ms ✓ Adapt 1249.7 ms ✓ DataAPI 1379.8 ms ✓ StaticArraysCore 1392.8 ms ✓ MappedArrays 2228.0 ms ✓ PDMats 1686.2 ms ✓ WoodburyMatrices 1254.0 ms ✓ Requires 1911.2 ms ✓ ProgressMeter 5386.3 ms ✓ StructUtils 45557.5 ms ✓ Unitful 1250.6 ms ✓ Scratch 1551.0 ms ✓ Preferences 4424.6 ms ✓ Compat 3337.9 ms ✓ UnicodeFun 6304.5 ms ✓ PkgVersion 5399.7 ms ✓ AbstractFFTs → AbstractFFTsTestExt 877.2 ms ✓ TableTraits 915.8 ms ✓ StackViews 948.8 ms ✓ PaddedViews 1574.0 ms ✓ FillArrays → FillArraysSparseArraysExt 1190.9 ms ✓ Primes 2297.1 ms ✓ InverseFunctions → InverseFunctionsTestExt 1078.3 ms ✓ InverseFunctions → InverseFunctionsDatesExt 2212.1 ms ✓ SignedDistanceFields 8543.9 ms ✓ FixedPointNumbers 4425.5 ms ✓ Distances 1373.0 ms ✓ Statistics → SparseArraysExt 875.5 ms ✓ FillArrays → FillArraysStatisticsExt 3190.3 ms ✓ SimpleTraits 3623.0 ms ✓ DataStructures 1480.8 ms ✓ LogExpFunctions 942.2 ms ✓ IntervalSets → IntervalSetsRandomExt 915.5 ms ✓ IntervalSets → IntervalSetsStatisticsExt 1108.6 ms ✓ AliasTables 910.0 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 950.1 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1524.9 ms ✓ Adapt → AdaptSparseArraysExt 1023.3 ms ✓ OffsetArrays → OffsetArraysAdaptExt 4059.8 ms ✓ Missings 1459.6 ms ✓ FillArrays → FillArraysPDMatsExt 1439.2 ms ✓ AxisAlgorithms 858.0 ms ✓ Ratios 13509.6 ms ✓ FileIO 880.2 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 2184.8 ms ✓ Unitful → ConstructionBaseUnitfulExt 1883.6 ms ✓ Unitful → InverseFunctionsUnitfulExt 3234.9 ms ✓ Unitful → PrintfExt 1584.8 ms ✓ RelocatableFolders 1875.0 ms ✓ JLLWrappers 1488.8 ms ✓ PrecompileTools 5686.0 ms ✓ ComputePipeline 924.1 ms ✓ Compat → CompatLinearAlgebraExt 4662.6 ms ✓ Tables 1041.7 ms ✓ MosaicViews 3131.2 ms ✓ FFTA 5324.5 ms ✓ ColorTypes 1424.0 ms ✓ Distances → DistancesSparseArraysExt ✗ FLANN 1155.9 ms ✓ SortingAlgorithms 5482.2 ms ✓ QuadGK 942.0 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 2464.6 ms ✓ AxisArrays 1263.1 ms ✓ Ratios → RatiosFixedPointNumbersExt 1988.0 ms ✓ CoreMath_jll 2151.8 ms ✓ Graphite2_jll 2095.7 ms ✓ Libmount_jll 1774.6 ms ✓ LLVMOpenMP_jll 1652.4 ms ✓ Bzip2_jll 1700.9 ms ✓ Xorg_libpciaccess_jll 1588.7 ms ✓ Rmath_jll 1527.8 ms ✓ Xorg_libXau_jll 2031.7 ms ✓ libpng_jll 2154.6 ms ✓ libfdk_aac_jll 2027.6 ms ✓ Imath_jll 2084.6 ms ✓ Giflib_jll 2016.5 ms ✓ LAME_jll 1629.9 ms ✓ LERC_jll 1532.8 ms ✓ EarCut_jll 1518.3 ms ✓ CRlibm_jll 1398.6 ms ✓ JpegTurbo_jll 1454.1 ms ✓ XZ_jll 1471.8 ms ✓ Ogg_jll 1511.2 ms ✓ Xorg_libXdmcp_jll 1477.0 ms ✓ x265_jll 1614.0 ms ✓ x264_jll 1541.9 ms ✓ libaom_jll 1491.9 ms ✓ Zstd_jll 1365.6 ms ✓ Expat_jll 1439.3 ms ✓ Opus_jll 1486.8 ms ✓ Xorg_xtrans_jll 1735.0 ms ✓ Libiconv_jll 1684.2 ms ✓ Libffi_jll 1630.9 ms ✓ isoband_jll 1653.2 ms ✓ FFTW_jll 1542.4 ms ✓ OpenSpecFun_jll 1432.4 ms ✓ FriBidi_jll 1511.5 ms ✓ Libuuid_jll 1387.5 ms ✓ OpenBLASConsistentFPCSR_jll 20762.4 ms ✓ StaticArrays 23650.5 ms ✓ Automa 22333.1 ms ✓ SIMD 18064.7 ms ✓ Parsers 3374.3 ms ✓ FilePathsBase 7303.9 ms ✓ ChainRulesCore 5066.9 ms ✓ StructArrays 905.3 ms ✓ StructUtils → StructUtilsTablesExt 5772.6 ms ✓ QOI 8873.7 ms ✓ ColorVectorSpace 10632.9 ms ✓ Colors 8471.4 ms ✓ StatsBase 1182.1 ms ✓ CoreMath 2525.7 ms ✓ Pixman_jll 1604.7 ms ✓ FreeType2_jll 1624.0 ms ✓ libdrm_jll 1818.4 ms ✓ Rmath 1534.1 ms ✓ OpenEXR_jll 1517.7 ms ✓ CRlibm 1953.5 ms ✓ libsixel_jll 1977.8 ms ✓ libvorbis_jll 2028.4 ms ✓ Xorg_libxcb_jll 2785.7 ms ✓ CodecZstd 1809.9 ms ✓ Libtiff_jll 1611.4 ms ✓ XML2_jll 1650.3 ms ✓ GettextRuntime_jll 959.3 ms ✓ Isoband 1535.9 ms ✓ sgtsnepi_jll 6551.4 ms ✓ SpecialFunctions 7746.2 ms ✓ ArnoldiMethod 1836.7 ms ✓ StaticArrays → StaticArraysStatisticsExt 1937.4 ms ✓ FillArrays → FillArraysStaticArraysExt 1872.7 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1428.6 ms ✓ Adapt → AdaptStaticArraysExt 32769.7 ms ✓ GeometryBasics 11139.4 ms ✓ JSON 1449.3 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3383.6 ms ✓ FilePathsBase → FilePathsBaseTestExt 2355.6 ms ✓ FilePaths 6247.0 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1321.7 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 1283.8 ms ✓ Distances → DistancesChainRulesCoreExt 3745.9 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 4930.7 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1259.4 ms ✓ StructArrays → StructArraysAdaptExt 1847.3 ms ✓ StructArrays → StructArraysSparseArraysExt 6496.6 ms ✓ StructArrays → StructArraysStaticArraysExt 1130.7 ms ✓ StructArrays → StructArraysLinearAlgebraExt 1362.2 ms ✓ Animations 44574.5 ms ✓ ImageCore 10674.0 ms ✓ ColorSchemes 1784.1 ms ✓ PDMats → StatsBaseExt 2324.7 ms ✓ FreeType 1658.7 ms ✓ Fontconfig_jll 6592.1 ms ✓ OpenEXR 10926.7 ms ✓ IntervalArithmetic 1546.0 ms ✓ Xorg_libX11_jll 77056.4 ms ✓ TiffImages 1554.1 ms ✓ Hwloc_jll 1579.9 ms ✓ Glib_jll 4872.6 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2123.6 ms ✓ HypergeometricFunctions 1328.6 ms ✓ ColorVectorSpace → SpecialFunctionsExt 11355.7 ms ✓ NearestNeighbors 18567.0 ms ✓ Graphs 25845.7 ms ✓ GridLayoutBase 4441.0 ms ✓ GeometryBasics → IntervalSetsExt 4085.1 ms ✓ Packing 7283.9 ms ✓ ShaderAbstractions 4613.2 ms ✓ ColorBrewer 1527.8 ms ✓ FilePaths → FilePathsURIParserExt 7827.0 ms ✓ Interpolations 4699.2 ms ✓ ImageBase 7620.6 ms ✓ PNGFiles 10992.4 ms ✓ Sixel 13229.4 ms ✓ JpegTurbo 24699.2 ms ✓ PlotUtils 8981.2 ms ✓ FreeTypeAbstraction 1598.3 ms ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 961.1 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 1182.5 ms ✓ IntervalArithmetic → IntervalArithmeticIrrationalConstantsExt 1422.6 ms ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 1478.7 ms ✓ Xorg_libXrender_jll 1705.8 ms ✓ Xorg_libXext_jll 1821.0 ms ✓ Xorg_libXfixes_jll 5292.9 ms ✓ Hwloc 7365.4 ms ✓ StatsFuns 4166.4 ms ✓ Graphs → GraphsSharedArraysExt 4775.4 ms ✓ Interpolations → InterpolationsUnitfulExt 8529.4 ms ✓ ImageAxes 37802.0 ms ✓ MathTeXEngine 11043.1 ms ✓ ExactPredicates 1532.9 ms ✓ Libglvnd_jll 1627.5 ms ✓ Cairo_jll 1588.2 ms ✓ libva_jll 1173.6 ms ✓ Hwloc → HwlocTrees 1059.8 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 4247.3 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 9907.2 ms ✓ Distributions 4034.8 ms ✓ ImageMetadata 13785.2 ms ✓ DelaunayTriangulation 1476.7 ms ✓ libwebp_jll 1532.5 ms ✓ HarfBuzz_jll 5109.2 ms ✓ SGtSNEpi 3538.8 ms ✓ Distributions → DistributionsTestExt 5759.8 ms ✓ Distributions → DistributionsChainRulesCoreExt 7828.5 ms ✓ Netpbm 8380.2 ms ✓ WebP 1568.8 ms ✓ libass_jll 3754.0 ms ✓ KernelDensity 4657.8 ms ✓ ImageIO 1779.3 ms ✓ FFMPEG_jll 460895.7 ms ✓ Makie 248 dependencies successfully precompiled in 1572 seconds. 42 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 174 dependents of these packages may trigger further precompilation to work with the unexpected versions. ERROR: LoadError: The following 1 direct dependency failed to precompile: FLANN Failed to precompile FLANN [4ef67f76-e0de-5105-ac01-03b6482fb4f8] to "/home/pkgeval/.julia/compiled/v1.12/FLANN/jl_KJSOvq". ERROR: LoadError: FLANN not properly installed. Please run Pkg.build("FLANN") Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] top-level scope @ ~/.julia/packages/FLANN/a7m6V/src/FLANN.jl:12 [3] include(mod::Module, _path::String) @ Base ./Base.jl:306 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [8] include_string @ ./loading.jl:2883 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [10] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/FLANN/a7m6V/src/FLANN.jl:3 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 1648.67s ################################################################################ # Testing # Testing SGtSNEpi Status `/tmp/jl_GRTuAk/Project.toml` ⌅ [5ae59095] Colors v0.12.11 [b4f34e82] Distances v0.10.12 [4ef67f76] FLANN v1.1.0 [86223c79] Graphs v1.14.0 [0e44f5e4] Hwloc v3.3.0 [ee78f7c6] Makie v0.24.11 [b8a86587] NearestNeighbors v0.4.27 [ae029012] Requires v1.3.1 [e6c19c8d] SGtSNEpi v0.4.0 [c2c51ba6] sgtsnepi_jll v3.0.0+0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_GRTuAk/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.6.1 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [67c07d97] Automa v1.2.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [9e28174c] BinDeps v1.0.2 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [d360d2e6] ChainRulesCore v1.26.1 [6b39b394] CodecZstd v0.8.7 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [34da2185] Compat v4.18.1 [95dc2771] ComputePipeline v0.1.8 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [b7a15901] CoreMath v0.1.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.6 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [429591f6] ExactPredicates v2.2.9 [b86e33f2] FFTA v0.3.1 [4ef67f76] FLANN v1.1.0 [5789e2e9] FileIO v1.19.0 [8fc22ac5] FilePaths v0.9.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [1fa38f19] Format v1.3.7 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [5c1252a2] GeometryBasics v0.5.11 [86223c79] Graphs v1.14.0 [3955a311] GridLayoutBase v0.11.2 [0e44f5e4] Hwloc v3.3.0 [34004b35] HypergeometricFunctions v0.3.28 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [18e54dd8] IntegerMathUtils v0.1.3 [a98d9a8b] Interpolations v0.16.3 [d1acc4aa] IntervalArithmetic v1.0.9 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.12 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [ee78f7c6] Makie v0.24.11 [dbb5928d] MappedArrays v0.4.3 [0a4f8689] MathTeXEngine v0.6.9 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [46d2c3a1] MuladdMacro v0.2.4 [b8a86587] NearestNeighbors v0.4.27 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [f57f5aa1] PNGFiles v0.4.5 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.6 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.4 [647866c9] PolygonOps v0.1.2 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [4b34888f] QOI v1.0.2 [1fd47b50] QuadGK v2.11.3 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [5eaf0fd0] RoundingEmulator v0.2.1 [e6c19c8d] SGtSNEpi v0.4.0 [fdea26ae] SIMD v3.7.2 [6c6a2e73] Scratch v1.3.0 [65257c39] ShaderAbstractions v0.5.0 [73760f76] SignedDistanceFields v0.4.1 [699a6c99] SimpleTraits v0.9.6 [45858cf5] Sixel v0.1.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [860ef19b] StableRNGs v1.0.4 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 ⌅ [4c63d2b9] StatsFuns v1.5.2 [09ab397b] StructArrays v0.7.3 [ec057cc2] StructUtils v2.8.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [731e570b] TiffImages v0.11.9 [3bb67fe8] TranscodingStreams v0.11.3 [981d1d27] TriplotBase v0.1.0 [30578b45] URIParser v0.4.1 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.28.0 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.1.0 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.7+0 [a38c48d9] CoreMath_jll v0.1.0+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.8.1+0 [b22a6f82] FFMPEG_jll 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[458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 1 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222954 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.90378 Iteration 50: error is 4.90378 (50 iterations in 0.171517 seconds) Iteration 100: error is 4.90378 (50 iterations in 0.178728 seconds) Iteration 150: error is 4.90378 (50 iterations in 0.175188 seconds) Iteration 200: error is 4.90378 (50 iterations in 0.156899 seconds) Iteration 250: error is 4.90378 (50 iterations in 0.1464 seconds) Iteration 299: error is 4.84284 (50 iterations in 0.144772 seconds) --- Time spent in each module --- Attractive forces: 0.720493 sec [80.1436%] | Repulsive forces: 0.17851 sec [19.8564%] [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 2 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222954 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.90378 Iteration 50: error is 4.90378 (50 iterations in 0.245338 seconds) Iteration 100: error is 4.90378 (50 iterations in 0.239863 seconds) Iteration 150: error is 4.90378 (50 iterations in 0.236322 seconds) Iteration 200: error is 4.90378 (50 iterations in 0.23569 seconds) Iteration 250: error is 4.90378 (50 iterations in 0.235643 seconds) Iteration 299: error is 4.75416 (50 iterations in 0.225862 seconds) --- Time spent in each module --- Attractive forces: 0.859467 sec [65.6286%] | Repulsive forces: 0.450126 sec [34.3714%] [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 3 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222954 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.90378 Iteration 50: error is 4.90378 (50 iterations in 0.835904 seconds) Iteration 100: error is 4.90378 (50 iterations in 0.793009 seconds) Iteration 150: error is 4.90378 (50 iterations in 0.797052 seconds) Iteration 200: error is 4.90378 (50 iterations in 0.807596 seconds) Iteration 250: error is 4.90378 (50 iterations in 0.8015 seconds) Iteration 299: error is 4.64265 (50 iterations in 0.813592 seconds) --- Time spent in each module --- Attractive forces: 1.04291 sec [22.1973%] | Repulsive forces: 3.65545 sec [77.8027%] [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 1 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222954 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.90378 Iteration 50: error is 4.90378 (50 iterations in 0.158283 seconds) Iteration 100: error is 4.90378 (50 iterations in 0.154873 seconds) Iteration 150: error is 4.90378 (50 iterations in 0.182923 seconds) Iteration 200: error is 4.90378 (50 iterations in 0.170665 seconds) Iteration 250: error is 4.90378 (50 iterations in 0.163486 seconds) Iteration 299: error is 4.8445 (50 iterations in 0.155216 seconds) --- Time spent in each module --- Attractive forces: 0.731693 sec [80.2781%] | Repulsive forces: 0.179755 sec [19.7219%] ┌ Warning: Found `resolution` in the theme when creating a `Scene`. The `resolution` keyword for `Scene`s and `Figure`s has been deprecated. Use `Figure(; size = ...` or `Scene(; size = ...)` instead, which better reflects that this is a unitless size and not a pixel resolution. The key could also come from `set_theme!` calls or related theming functions. └ @ Makie ~/.julia/packages/Makie/WKgwk/src/scenes.jl:264 [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 2 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222954 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.90378 Iteration 50: error is 4.90378 (50 iterations in 0.248644 seconds) Iteration 100: error is 4.90378 (50 iterations in 0.236097 seconds) Iteration 150: error is 4.90378 (50 iterations in 0.23592 seconds) Iteration 200: error is 4.90378 (50 iterations in 0.236441 seconds) Iteration 250: error is 4.90378 (50 iterations in 0.234941 seconds) Iteration 299: error is 4.75725 (50 iterations in 0.230554 seconds) --- Time spent in each module --- Attractive forces: 0.861986 sec [65.7153%] | Repulsive forces: 0.449712 sec [34.2847%] ┌ Warning: Found `resolution` in the theme when creating a `Scene`. The `resolution` keyword for `Scene`s and `Figure`s has been deprecated. Use `Figure(; size = ...` or `Scene(; size = ...)` instead, which better reflects that this is a unitless size and not a pixel resolution. The key could also come from `set_theme!` calls or related theming functions. └ @ Makie ~/.julia/packages/Makie/WKgwk/src/scenes.jl:264 [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 3 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222954 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.90378 Iteration 50: error is 4.90378 (50 iterations in 0.842972 seconds) Iteration 100: error is 4.90378 (50 iterations in 0.745862 seconds) Iteration 150: error is 4.90378 (50 iterations in 0.586464 seconds) Iteration 200: error is 4.90378 (50 iterations in 0.792062 seconds) Iteration 250: error is 4.90378 (50 iterations in 0.773481 seconds) Iteration 299: error is 4.63185 (50 iterations in 0.781992 seconds) --- Time spent in each module --- Attractive forces: 0.937093 sec [21.422%] | Repulsive forces: 3.43734 sec [78.578%] ┌ Warning: Found `resolution` in the theme when creating a `Scene`. The `resolution` keyword for `Scene`s and `Figure`s has been deprecated. Use `Figure(; size = ...` or `Scene(; size = ...)` instead, which better reflects that this is a unitless size and not a pixel resolution. The key could also come from `set_theme!` calls or related theming functions. └ @ Makie ~/.julia/packages/Makie/WKgwk/src/scenes.jl:264 Precompiling packages... Info Given FLANN was explicitly requested, output will be shown live  ERROR: LoadError: FLANN not properly installed. Please run Pkg.build("FLANN") Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] top-level scope  @ ~/.julia/packages/FLANN/a7m6V/src/FLANN.jl:12  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3027  [5] top-level scope  @ stdin:5  [6] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2873  [8] include_string  @ ./loading.jl:2883 [inlined]  [9] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [10] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/FLANN/a7m6V/src/FLANN.jl:3 in expression starting at stdin:5 ✗ FLANN 0 dependencies successfully precompiled in 13 seconds. 31 already precompiled. 29 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, CompilerSupportLibraries_jll, Dates, Distances, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, Statistics, StatsAPI, StyledStrings, TOML, Tar, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. SGtSNEpi.jl: Error During Test at /home/pkgeval/.julia/packages/SGtSNEpi/PpCqk/test/runtests.jl:8 Got exception outside of a @test The following 1 direct dependency failed to precompile: FLANN Failed to precompile FLANN [4ef67f76-e0de-5105-ac01-03b6482fb4f8] to "/home/pkgeval/.julia/compiled/v1.12/FLANN/jl_ggr0vT". ERROR: LoadError: FLANN not properly installed. Please run Pkg.build("FLANN") Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] top-level scope @ ~/.julia/packages/FLANN/a7m6V/src/FLANN.jl:12 [3] include(mod::Module, _path::String) @ Base ./Base.jl:306 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [8] include_string @ ./loading.jl:2883 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [10] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/FLANN/a7m6V/src/FLANN.jl:3 in expression starting at stdin: Test Summary: | Pass Error Total Time SGtSNEpi.jl | 24 1 25 4m10.2s exact knn | 24 24 3m55.9s RNG of the outermost testset: Random.Xoshiro(0xe671fc509ed165e9, 0x0ef01b498fba74a7, 0xf4da62dcc6c34235, 0x52ae9897b4b7fc33, 0x1e4c68a320d8f44c) ERROR: LoadError: Some tests did not pass: 24 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SGtSNEpi/PpCqk/test/runtests.jl:8 Testing failed after 334.02s ERROR: LoadError: Package SGtSNEpi errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2034.78s: package fails to precompile