Package evaluation to test RegressionDynamicCausalModeling on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T23:38:53.901 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.95s ################################################################################ # Installation # Installing RegressionDynamicCausalModeling... Resolving package versions... Installed RegressionDynamicCausalModeling ─ v0.2.1 Updating `~/.julia/environments/v1.12/Project.toml` [4fb452e6] + RegressionDynamicCausalModeling v0.2.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [66dad0bd] + AliasTables v1.1.3 [e1450e63] + BufferedStreams v1.2.2 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [7a1cc6ca] + FFTW v1.10.0 [1a297f60] + FillArrays v1.16.0 [f67ccb44] + HDF5 v0.17.3 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 [2ab3a3ac] + LogExpFunctions v1.0.1 ⌅ [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.12 [e1d29d7a] + Missings v1.2.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [4fb452e6] + RegressionDynamicCausalModeling v0.2.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [6c6a2e73] + Scratch v1.3.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [3bb67fe8] + TranscodingStreams v0.11.3 [f5851436] + FFTW_jll v3.3.12+0 [0234f1f7] + HDF5_jll v2.1.2+0 [e33a78d0] + Hwloc_jll v2.14.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.7+0 [9aeb927a] + mpif_jll v0.1.7+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [cddc5d3d] + s2n_tls_jll v1.7.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building RegressionDynamicCausalModeling → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0349d17ac4e69b726958b19beb6c4a667397cbf3/build.log` Installation completed after 21.81s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 70591.6 ms ✓ RegressionDynamicCausalModeling 1 dependency successfully precompiled in 74 seconds. 127 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 67 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 99.92s ################################################################################ # Testing # Testing RegressionDynamicCausalModeling Status `/tmp/jl_K7zSmw/Project.toml` [4c88cf16] Aqua v0.8.16 [c3a54625] JET v0.11.4 [98e50ef6] JuliaFormatter v2.9.0 ⌅ [23992714] MAT v0.10.7 [4fb452e6] RegressionDynamicCausalModeling v0.2.1 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_K7zSmw/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.16 [e1450e63] BufferedStreams v1.2.2 [da1fd8a2] CodeTracking v3.0.2 [944b1d66] CodecZlib v0.7.8 [a80b9123] CommonMark v1.0.2 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [7a1cc6ca] FFTW v1.10.0 [1a297f60] FillArrays v1.16.0 [c27321d9] Glob v1.5.0 [f67ccb44] HDF5 v0.17.3 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.6 [c3a54625] JET v0.11.4 [692b3bcd] JLLWrappers v1.8.0 [98e50ef6] JuliaFormatter v2.9.0 [aa1ae85d] JuliaInterpreter v0.10.12 [70703baa] JuliaSyntax v1.0.2 [2ab3a3ac] LogExpFunctions v1.0.1 ⌅ [6f1432cf] LoweredCodeUtils v3.5.3 ⌅ [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [4fb452e6] RegressionDynamicCausalModeling v0.2.1 [ae029012] Requires v1.3.1 [295af30f] Revise v3.15.1 [79098fc4] Rmath v0.9.0 [6c6a2e73] Scratch v1.3.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [3bb67fe8] TranscodingStreams v0.11.3 [f5851436] FFTW_jll v3.3.12+0 [0234f1f7] HDF5_jll v2.1.2+0 [e33a78d0] Hwloc_jll v2.14.0+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [b5ada748] MPIABI_jll v0.1.5+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.11+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] aws_c_auth_jll v0.9.6+0 [70f11efc] aws_c_cal_jll v0.9.13+0 [73048d1d] aws_c_common_jll v0.12.6+0 [73a04cd5] aws_c_compression_jll v0.3.2+0 [3254fc65] aws_c_http_jll v0.10.13+0 [13c41daa] aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] aws_c_s3_jll v0.11.5+0 [1282aa60] aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] aws_checksums_jll v0.2.10+0 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [477f73a3] libaec_jll v1.1.7+0 [9aeb927a] mpif_jll v0.1.7+0 [1317d2d5] oneTBB_jll v2022.3.0+0 [cddc5d3d] s2n_tls_jll v1.7.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 89695.0 ms ✓ RegressionDynamicCausalModeling 1 dependency successfully precompiled in 93 seconds. 106 already precompiled. 60 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, BufferedStreams, CodecZlib, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, Dates, Downloads, HDF5, HDF5_jll, Hwloc_jll, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Libiconv_jll, Logging, MAT, MPICH_jll, MPIPreferences, Markdown, Mmap, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, OrderedCollections, Pkg, PrecompileTools, Preferences, Printf, Requires, Serialization, SparseArrays, StyledStrings, SuiteSparse_jll, TOML, Tar, TranscodingStreams, UUIDs, Unicode, XML2_jll, Xorg_libpciaccess_jll, Zlib_jll, aws_c_auth_jll, aws_c_cal_jll, aws_c_common_jll, aws_c_compression_jll, aws_c_http_jll, aws_c_io_jll, aws_c_s3_jll, aws_c_sdkutils_jll, aws_checksums_jll, libaec_jll, nghttp2_jll, p7zip_jll and s2n_tls_jll). Restart julia to access the new versions. Otherwise, 33 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 5663.8 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 8 seconds. 48 already precompiled. 48 dependencies precompiled but different versions are currently loaded (AliasTables, Base64, CompilerSupportLibraries_jll, DataAPI, DataStructures, Dates, Distributions, DocStringExtensions, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, HypergeometricFunctions, InteractiveUtils, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LogExpFunctions, Logging, Markdown, Missings, OpenLibm_jll, OpenSpecFun_jll, OrderedCollections, PDMats, PDMats → StatsBaseExt, Preferences, Printf, PtrArrays, QuadGK, Reexport, Rmath, Rmath_jll, Serialization, SortingAlgorithms, SparseArrays, SpecialFunctions, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, Test and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. ┌ Warning: `target_defined_modules::Bool` configuration is deprecated. │ Please use `target_modules` instead and specify the modules you want to target with e.g. `target_modules=(pkgmod,)` └ @ JET ~/.julia/packages/JET/Nf2tu/src/analyzers/jetanalyzer.jl:1678 Code linting: JET-test failed at /home/pkgeval/.julia/packages/JET/Nf2tu/src/JETBase.jl:1400 Expression: (JET.report_package)(RegressionDynamicCausalModeling; toplevel_logger = nothing, target_defined_modules = true) ═════ 2 possible errors found ═════ ┌ RigidRdcm(dcm::LinearDCM) @ RegressionDynamicCausalModeling /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/HcxUA/src/constructors.jl:670 │ local variable `N` may be undefined: N::Int64 └──────────────────── ┌ RigidRdcm(dcm::LinearDCM) @ RegressionDynamicCausalModeling /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/HcxUA/src/constructors.jl:675 │ local variable `N` may be undefined: N::Int64 └──────────────────── Test Summary: | Pass Fail Total Time rDCM tests | 278 1 279 13m32.2s Code formatting | 1 1 1m19.2s Code linting | 1 1 2m25.8s Code quality | 9 9 3m23.5s Utils | 54 54 1m13.4s save/load DCM | 21 21 19.5s pretty print | 16 16 19.7s SPM compatibility | 17 17 11.0s Constructors | 143 143 3.5s Create HRF | 4 4 0.1s Generate synthetic data | 15 15 46.7s linear | 2 2 13.1s special cases | 4 4 21.3s bilinear | 2 2 5.2s nonlinear | 2 2 6.2s Priors | 25 25 5.8s Prior param | 10 10 0.0s Sample prior | 9 9 0.0s Rigid prior | 6 6 0.9s Create regressors | 3 3 1.7s Model inversion | 21 21 14.8s rigid rDCM | 7 7 1.5s sparse rDCM (fix C matrix) | 6 6 4.1s sparse rDCM (prune C matrix) | 6 6 5.8s Prediction | 3 3 14.0s rigid rDCM | 1 1 4.4s sparse rDCM | 1 1 8.5s error handling | 1 1 0.1s RNG of the outermost testset: Xoshiro(0x096f4c1245bb8ee1, 0xe63815c6ccf71d0e, 0x64d2798baaf16279, 0x0f55a840a7de8b77, 0x1f8b86e59a6da2a9) ERROR: LoadError: Some tests did not pass: 278 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/HcxUA/test/runtests.jl:11 Testing failed after 972.5s ERROR: LoadError: Package RegressionDynamicCausalModeling errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1120.15s: package has test failures