Package evaluation to test ReefModEngine on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T08:59:02.132 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.13s ################################################################################ # Installation # Installing ReefModEngine... Resolving package versions... Installed DiffRules ─────────────────── v1.16.0 Installed Crayons ───────────────────── v4.1.1 Installed libaec_jll ────────────────── v1.1.7+0 Installed Adapt ─────────────────────── v4.6.1 Installed WeightedOnlineStats ───────── v0.6.3 Installed Blosc_jll ─────────────────── v1.21.7+0 Installed IrrationalConstants ───────── v0.2.6 Installed MPICH_jll ─────────────────── v5.0.1+0 Installed CSV ───────────────────────── v0.10.16 Installed OffsetArrays ──────────────── v1.17.0 Installed libzip_jll ────────────────── v1.11.3+0 Installed OnlineStatsBase ───────────── v1.7.3 Installed LRUCache ──────────────────── v1.6.2 Installed Rmath ─────────────────────── v0.9.0 Installed HypergeometricFunctions ───── v0.3.28 Installed JSON ──────────────────────── v0.21.4 Installed XML2_jll ──────────────────── v2.13.9+0 Installed Xorg_libpciaccess_jll ─────── v0.19.0+0 Installed NetCDF ────────────────────── v0.11.8 Installed IntervalSets ──────────────── v0.7.14 Installed PrettyTables ──────────────── v3.3.2 Installed TableTraits ───────────────── v1.0.1 Installed DiffResults ───────────────── v1.1.0 Installed DimensionalData ───────────── v0.29.27 Installed StatsFuns ─────────────────── v2.2.0 Installed IterTools ─────────────────── v1.10.0 Installed Zstd_jll ──────────────────── v1.5.7+1 Installed PtrArrays ─────────────────── v1.4.0 Installed Preferences ───────────────── v1.5.2 Installed ADTypes ───────────────────── v1.22.0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed SentinelArrays ────────────── v1.4.10 Installed Parsers ───────────────────── v2.8.6 Installed Hwloc_jll ─────────────────── v2.14.0+0 Installed SpecialFunctions ──────────── v2.8.0 Installed PositiveFactorizations ────── v0.2.4 Installed Tables ────────────────────── v1.12.1 Installed DataAPI ───────────────────── v1.16.0 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 Installed XZ_jll ────────────────────── v5.8.3+0 Installed PDMats ────────────────────── v0.11.37 Installed OpenMPI_jll ───────────────── v4.1.9+0 Installed Extents ───────────────────── v0.1.6 Installed Optim ─────────────────────── v1.13.3 Installed Setfield ──────────────────── v1.1.2 Installed PooledArrays ──────────────── v1.4.3 Installed ParallelUtilities ─────────── v0.8.6 Installed RecipesBase ───────────────── v1.3.4 Installed InlineStrings ─────────────── v1.4.5 Installed JLLWrappers ───────────────── v1.8.0 Installed NaNMath ───────────────────── v1.1.4 Installed StaticArraysCore ──────────── v1.4.4 Installed ProgressMeter ─────────────── v1.11.0 Installed DiskArrayTools ────────────── v0.1.11 Installed StaticArrays ──────────────── v1.9.18 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataValueInterfaces ───────── v1.0.0 Installed ConstructionBase ──────────── v1.6.0 Installed AbstractTrees ─────────────── v0.4.5 Installed PrecompileTools ───────────── v1.3.4 Installed YAXArrays ─────────────────── v0.5.14 Installed WorkerUtilities ───────────── v1.6.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed OrderedCollections ────────── v1.8.2 Installed TranscodingStreams ────────── v0.11.3 Installed EnumX ─────────────────────── v1.0.7 Installed NLSolversBase ─────────────── v7.10.0 Installed InvertedIndices ───────────── v1.3.1 Installed FillArrays ────────────────── v1.16.0 Installed ForwardDiff ───────────────── v1.4.1 Installed FilePathsBase ─────────────── v0.9.24 Installed ChainRulesCore ────────────── v1.26.1 Installed Interpolations ────────────── v0.15.1 Installed ArrayInterface ────────────── v7.25.0 Installed Reexport ──────────────────── v1.2.2 Installed LineSearches ──────────────── v7.5.1 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed DataFrames ────────────────── v1.8.2 Installed MPIPreferences ────────────── v0.1.12 Installed QuadGK ────────────────────── v2.11.3 Installed MPItrampoline_jll ─────────── v5.5.6+0 Installed Statistics ────────────────── v1.11.1 Installed LogExpFunctions ───────────── v1.0.1 Installed Ratios ────────────────────── v0.4.5 Installed CommonSubexpressions ──────── v0.3.1 Installed AxisAlgorithms ────────────── v1.1.0 Installed SplittablesBase ───────────── v0.1.15 Installed WeakRefStrings ────────────── v1.4.3 Installed Requires ──────────────────── v1.3.1 Installed AliasTables ───────────────── v1.1.3 Installed CFTime ────────────────────── v0.1.4 Installed ReefModEngine ─────────────── v1.8.0 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.18.22 Installed StatsAPI ──────────────────── v1.8.0 Installed Distributions ─────────────── v0.25.127 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed NetCDF_jll ────────────────── v400.902.211+1 Installed CodecZlib ─────────────────── v0.7.8 Installed Interfaces ────────────────── v0.3.2 Installed Glob ──────────────────────── v1.5.0 Installed Compat ────────────────────── v4.18.1 Installed HDF5_jll ──────────────────── v1.14.3+3 Installed SortingAlgorithms ─────────── v1.2.2 Installed YAXArrayBase ──────────────── v0.7.11 Installed StringManipulation ────────── v0.4.4 Installed DifferentiationInterface ──── v0.7.18 Installed Missings ──────────────────── v1.2.0 Installed StatsBase ─────────────────── v0.34.12 Installed DocStringExtensions ───────── v0.9.5 Installed WoodburyMatrices ──────────── v1.1.0 Installed DiskArrays ────────────────── v0.3.23 Installed OnlineStats ───────────────── v1.7.4 Installed FiniteDiff ────────────────── v2.31.0 Installing 17 artifacts Installed artifact libzip 177.6 KiB Installed artifact Lz4 239.7 KiB Installed artifact Zstd 646.0 KiB Installed artifact NetCDF 901.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Blosc 44.2 KiB Installed artifact libaec 50.4 KiB Installed artifact Rmath 121.9 KiB Installed artifact Xorg_libpciaccess 26.2 KiB Installed artifact Hwloc 3.5 MiB Installed artifact XML2 2.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact XZ 1.6 MiB Installed artifact HDF5 5.3 MiB Installed artifact testfiles 6.2 MiB Installed artifact MPICH 8.8 MiB Updating `~/.julia/environments/v1.12/Project.toml` [f4ffb74a] + ReefModEngine v1.8.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.25.0 [13072b0f] + AxisAlgorithms v1.1.0 ⌅ [179af706] + CFTime v0.1.4 [336ed68f] + CSV v0.10.16 [d360d2e6] + ChainRulesCore v1.26.1 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 ⌅ [0703355e] + DimensionalData v0.29.27 ⌃ [fcd2136c] + DiskArrayTools v0.1.11 ⌅ [3c3547ce] + DiskArrays v0.3.23 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [411431e0] + Extents v0.1.6 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.31.0 [f6369f11] + ForwardDiff v1.4.1 [c27321d9] + Glob v1.5.0 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [85a1e053] + Interfaces v0.3.2 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.14 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 ⌅ [682c06a0] + JSON v0.21.4 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v1.0.1 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.4 ⌅ [30363a11] + NetCDF v0.11.8 [6fe1bfb0] + OffsetArrays v1.17.0 [a15396b6] + OnlineStats v1.7.4 [925886fa] + OnlineStatsBase v1.7.3 ⌅ [429524aa] + Optim v1.13.3 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [fad6cfc8] + ParallelUtilities v0.8.6 [69de0a69] + Parsers v2.8.6 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [f4ffb74a] + ReefModEngine v1.8.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [ea10d353] + WeakRefStrings v1.4.3 [bbac0a1f] + WeightedOnlineStats v0.6.3 [efce3f68] + WoodburyMatrices v1.1.0 [76eceee3] + WorkerUtilities v1.6.1 [90b8fcef] + YAXArrayBase v0.7.11 ⌅ [c21b50f5] + YAXArrays v0.5.14 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [e33a78d0] + Hwloc_jll v2.14.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 ⌅ [7243133f] + NetCDF_jll v400.902.211+1 ⌅ [fe0851c0] + OpenMPI_jll v4.1.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.3+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.7+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 20.98s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4486.6 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling package dependencies... Precompiling packages... 987.6 ms ✓ LaTeXStrings 934.1 ms ✓ PositiveFactorizations 1005.6 ms ✓ Glob 707.8 ms ✓ IteratorInterfaceExtensions 998.4 ms ✓ WorkerUtilities 843.7 ms ✓ StatsAPI 1471.2 ms ✓ ADTypes 1645.4 ms ✓ OffsetArrays 1925.8 ms ✓ FillArrays 1082.2 ms ✓ Statistics 1169.4 ms ✓ IterTools 7280.9 ms ✓ MacroTools 4125.3 ms ✓ OrderedCollections 728.7 ms ✓ DataValueInterfaces 844.4 ms ✓ EnumX 775.1 ms ✓ Reexport 1128.2 ms ✓ DocStringExtensions 1746.1 ms ✓ InlineStrings 1038.3 ms ✓ AbstractTrees 5009.9 ms ✓ IrrationalConstants 1035.3 ms ✓ IntervalSets 977.3 ms ✓ Extents 923.4 ms ✓ Interfaces 781.5 ms ✓ PtrArrays 1251.4 ms ✓ TranscodingStreams 3697.8 ms ✓ NaNMath 796.4 ms ✓ InvertedIndices 1043.2 ms ✓ LRUCache 3829.8 ms ✓ ConstructionBase 890.3 ms ✓ Adapt 848.5 ms ✓ DataAPI 4675.2 ms ✓ Crayons 951.6 ms ✓ StaticArraysCore 1907.0 ms ✓ PDMats 1481.1 ms ✓ WoodburyMatrices 1221.5 ms ✓ Requires 1958.1 ms ✓ ProgressMeter 2160.5 ms ✓ SentinelArrays 1526.8 ms ✓ CFTime 1206.3 ms ✓ Preferences 3899.0 ms ✓ Compat 731.0 ms ✓ TableTraits 4852.5 ms ✓ DifferentiationInterface 1515.2 ms ✓ FillArrays → FillArraysSparseArraysExt 1331.3 ms ✓ Statistics → SparseArraysExt 897.9 ms ✓ FillArrays → FillArraysStatisticsExt 1601.5 ms ✓ CommonSubexpressions 1309.2 ms ✓ LogExpFunctions 788.6 ms ✓ IntervalSets → IntervalSetsRandomExt 793.1 ms ✓ IntervalSets → IntervalSetsStatisticsExt 1136.2 ms ✓ AliasTables 1047.4 ms ✓ CodecZlib 808.7 ms ✓ LRUCache → SerializationExt 2023.1 ms ✓ DiskArrays 783.3 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 789.3 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 788.4 ms ✓ ADTypes → ADTypesConstructionBaseExt 1303.5 ms ✓ Adapt → AdaptSparseArraysExt 3875.0 ms ✓ ArrayInterface 879.7 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1028.2 ms ✓ PooledArrays 3800.6 ms ✓ Missings 848.2 ms ✓ DiffResults 1463.6 ms ✓ FillArrays → FillArraysPDMatsExt 1464.4 ms ✓ AxisAlgorithms 859.9 ms ✓ Ratios 1482.4 ms ✓ JLLWrappers 1542.6 ms ✓ MPIPreferences 1053.0 ms ✓ PrecompileTools 918.6 ms ✓ Compat → CompatLinearAlgebraExt 4830.2 ms ✓ Tables 1376.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 3101.7 ms ✓ Setfield 1296.5 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 748.3 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1432.3 ms ✓ Bzip2_jll 1478.6 ms ✓ Lz4_jll 1458.6 ms ✓ Xorg_libpciaccess_jll 1429.6 ms ✓ libaec_jll 1492.5 ms ✓ Rmath_jll 1459.3 ms ✓ XZ_jll 1428.6 ms ✓ Zstd_jll 1111.2 ms ✓ MicrosoftMPI_jll 1399.4 ms ✓ Libiconv_jll 1399.5 ms ✓ OpenSpecFun_jll 4644.3 ms ✓ MPItrampoline_jll 4684.0 ms ✓ OpenMPI_jll 18102.5 ms ✓ StaticArrays 2941.9 ms ✓ RecipesBase 3261.1 ms ✓ StringManipulation 15053.5 ms ✓ Parsers 3960.5 ms ✓ DataStructures 2396.2 ms ✓ FilePathsBase 5202.6 ms ✓ ChainRulesCore 29754.6 ms ✓ DimensionalData 3765.6 ms ✓ SplittablesBase 1340.1 ms ✓ FiniteDiff 1590.8 ms ✓ Rmath 1452.4 ms ✓ Blosc_jll 1496.5 ms ✓ libzip_jll 1471.1 ms ✓ XML2_jll 6020.1 ms ✓ SpecialFunctions 1400.0 ms ✓ StaticArrays → StaticArraysStatisticsExt 1502.6 ms ✓ FillArrays → FillArraysStaticArraysExt 1445.9 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1380.2 ms ✓ Adapt → AdaptStaticArraysExt 1409.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1368.6 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 48472.2 ms ✓ PrettyTables 3322.9 ms ✓ JSON 919.3 ms ✓ InlineStrings → ParsersExt 1726.9 ms ✓ SortingAlgorithms 5902.6 ms ✓ QuadGK 1896.0 ms ✓ YAXArrayBase 1431.6 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3352.5 ms ✓ FilePathsBase → FilePathsBaseTestExt 4413.4 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1061.0 ms ✓ ADTypes → ADTypesChainRulesCoreExt 921.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3453.7 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 865.0 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 4642.6 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 2357.8 ms ✓ DimensionalData → DimensionalDataSparseArraysExt 1619.1 ms ✓ DimensionalData → DimensionalDataAdaptExt 1861.5 ms ✓ DimensionalData → DimensionalDataDiskArraysExt 1790.6 ms ✓ DimensionalData → DimensionalDataChainRulesCoreExt 1584.9 ms ✓ DimensionalData → DimensionalDataArrayInterfaceExt 2131.4 ms ✓ DimensionalData → DimensionalDataRecipesBaseExt 2547.9 ms ✓ ParallelUtilities 1336.0 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1345.5 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 988.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 1422.7 ms ✓ Hwloc_jll 4425.6 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2265.1 ms ✓ HypergeometricFunctions 1372.0 ms ✓ DiffRules 2418.5 ms ✓ WeakRefStrings 8367.0 ms ✓ StatsBase 92493.6 ms ✓ DataFrames 2708.6 ms ✓ YAXArrayBase → DimensionalDataExt 7269.2 ms ✓ Interpolations 1521.6 ms ✓ MPICH_jll 5037.0 ms ✓ StatsFuns 9876.3 ms ✓ ForwardDiff 29849.9 ms ✓ CSV 3251.1 ms ✓ OnlineStatsBase 2130.8 ms ✓ PDMats → StatsBaseExt 3413.6 ms ✓ DimensionalData → DimensionalDataStatsBaseExt 2808.6 ms ✓ DiskArrayTools 5409.9 ms ✓ HDF5_jll 3965.0 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1423.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 4424.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 10726.4 ms ✓ Distributions 5400.3 ms ✓ NetCDF_jll 2186.3 ms ✓ NLSolversBase 3450.6 ms ✓ Distributions → DistributionsTestExt 6586.9 ms ✓ Distributions → DistributionsChainRulesCoreExt 8469.8 ms ✓ OnlineStats 6878.9 ms ✓ NetCDF 4834.9 ms ✓ LineSearches 3534.9 ms ✓ WeightedOnlineStats 5430.0 ms ✓ YAXArrayBase → NetCDFExt 7099.3 ms ✓ Optim 9365.7 ms ✓ YAXArrays 19227.4 ms ✓ ReefModEngine 166 dependencies successfully precompiled in 644 seconds. 40 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 105 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 671.51s ################################################################################ # Testing # Testing ReefModEngine Status `/tmp/jl_Tk8Gw7/Project.toml` [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.2 ⌅ [0703355e] DimensionalData v0.29.27 ⌅ [682c06a0] JSON v0.21.4 ⌅ [30363a11] NetCDF v0.11.8 ⌅ [bac558e1] OrderedCollections v1.8.2 [f4ffb74a] ReefModEngine v1.8.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.12 ⌅ [c21b50f5] YAXArrays v0.5.14 [ade2ca70] Dates v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Tk8Gw7/Manifest.toml` [47edcb42] ADTypes v1.22.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.25.0 [13072b0f] AxisAlgorithms v1.1.0 ⌅ [179af706] CFTime v0.1.4 [336ed68f] CSV v0.10.16 [d360d2e6] ChainRulesCore v1.26.1 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.18 ⌅ [0703355e] DimensionalData v0.29.27 ⌃ [fcd2136c] DiskArrayTools v0.1.11 ⌅ [3c3547ce] DiskArrays v0.3.23 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [411431e0] Extents v0.1.6 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.31.0 [f6369f11] ForwardDiff v1.4.1 [c27321d9] Glob v1.5.0 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [85a1e053] Interfaces v0.3.2 ⌅ [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.14 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 ⌅ [682c06a0] JSON v0.21.4 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v1.0.1 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌅ [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.4 ⌅ [30363a11] NetCDF v0.11.8 [6fe1bfb0] OffsetArrays v1.17.0 [a15396b6] OnlineStats v1.7.4 [925886fa] OnlineStatsBase v1.7.3 ⌅ [429524aa] Optim v1.13.3 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [fad6cfc8] ParallelUtilities v0.8.6 [69de0a69] Parsers v2.8.6 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [f4ffb74a] ReefModEngine v1.8.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.10 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.3 [bbac0a1f] WeightedOnlineStats v0.6.3 [efce3f68] WoodburyMatrices v1.1.0 [76eceee3] WorkerUtilities v1.6.1 [90b8fcef] YAXArrayBase v0.7.11 ⌅ [c21b50f5] YAXArrays v0.5.14 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 ⌅ [0234f1f7] HDF5_jll v1.14.3+3 [e33a78d0] Hwloc_jll v2.14.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 ⌅ [7243133f] NetCDF_jll v400.902.211+1 ⌅ [fe0851c0] OpenMPI_jll v4.1.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.3+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 [3161d3a3] Zstd_jll v1.5.7+1 [477f73a3] libaec_jll v1.1.7+0 [337d8026] libzip_jll v1.11.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: KeyError: key "RME_PATH" not found Stacktrace: [1] (::Base.var"#getindex##11#getindex##12")(k::String) @ Base ./env.jl:164 [2] access_env(onError::Base.var"#getindex##11#getindex##12", var::String) @ Base ./env.jl:60 [3] getindex(::Base.EnvDict, k::String) @ Base ./env.jl:164 [4] top-level scope @ ~/.julia/packages/ReefModEngine/V7vnE/test/runtests.jl:4 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [6] top-level scope @ none:6 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [9] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/ReefModEngine/V7vnE/test/runtests.jl:4 Testing failed after 39.43s ERROR: LoadError: Package ReefModEngine errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 760.29s: package tests unexpectedly errored