Package evaluation to test ReactionNetworkImporters on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T04:55:30.612 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.19s ################################################################################ # Installation # Installing ReactionNetworkImporters... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [b4db0fb7] + ReactionNetworkImporters v1.3.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [14f7f29c] + AMD v0.5.3 [6e696c72] + AbstractPlutoDingetjes v1.4.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.25.0 [4c555306] + ArrayLayouts v1.12.2 [aae01518] + BandedMatrices v1.11.0 [e2ed5e7c] + Bijections v0.2.2 [caf10ac8] + BipartiteGraphs v0.1.7 [8e7c35d0] + BlockArrays v1.9.3 [70df07ce] + BracketingNonlinearSolve v1.12.1 [479239e8] + Catalyst v16.2.0 ⌅ [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.7 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.4 [187b0558] + ConstructionBase v1.6.0 [864edb3b] + DataStructures v0.19.5 [2b5f629d] + DiffEqBase v7.5.5 [459566f4] + DiffEqCallbacks v4.18.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.18 [8d63f2c5] + DispatchDoctor v0.4.28 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.8.0 [7c1d4256] + DynamicPolynomials v0.6.6 [06fc5a27] + DynamicQuantities v1.13.0 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.20 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v1.3.2 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.3.1 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.31.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.4.1 [a85aefff] + FunctionMaps v0.1.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v1.9.1 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.14.0 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] + ImplicitDiscreteSolve v2.1.0 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.29.0 [ba0b0d4f] + Krylov v0.10.6 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [87fe0de2] + LineSearch v0.1.9 [7ed4a6bd] + LinearSolve v3.86.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [bb5d69b7] + MaybeInplace v0.1.4 [7771a370] + ModelingToolkitBase v1.44.0 [2e0e35c7] + Moshi v0.3.8 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.19 [d8a4904e] + MutableArithmetics v1.8.0 [77ba4419] + NaNMath v1.1.4 [be0214bd] + NonlinearSolveBase v2.31.0 [5959db7a] + NonlinearSolveFirstOrder v2.1.1 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [bbf590c4] + OrdinaryDiffEqCore v4.3.0 ⌅ [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.9 [d236fae5] + PreallocationTools v1.2.0 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [27ebfcd6] + Primes v0.5.7 [0c0d3e7f] + PureKLU v1.0.1 [b4db0fb7] + ReactionNetworkImporters v1.3.0 [988b38a3] + ReadOnlyArrays v0.2.0 [795d4caa] + ReadOnlyDicts v1.0.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v4.3.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.19 [9dfe8606] + SCCNonlinearSolve v1.13.0 [0bca4576] + SciMLBase v3.21.0 [19f34311] + SciMLJacobianOperators v0.1.13 [a6db7da4] + SciMLLogging v2.0.0 [c0aeaf25] + SciMLOperators v1.22.0 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.12.0 [699a6c99] + SimpleTraits v0.9.6 [a57abbd0] + SparseColumnPivotedQR v2.1.1 [276daf66] + SpecialFunctions v2.8.0 [0c0c59c1] + StarAlgebras v0.3.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [2efcf032] + SymbolicIndexingInterface v0.3.48 [19f23fe9] + SymbolicLimits v1.1.0 [d1185830] + SymbolicUtils v4.35.3 [0c5d862f] + Symbolics v7.28.1 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [d30d5f5c] + WeakCacheSets v0.1.0 [61579ee1] + Ghostscript_jll v9.55.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.5+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.09s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 37535.6 ms ✓ ModelingToolkitBase → MTKLatexifyExt 195883.9 ms ✓ Catalyst 87083.1 ms ✓ ReactionNetworkImporters 3 dependencies successfully precompiled in 337 seconds. 282 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 153 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 349.45s ################################################################################ # Testing # Testing ReactionNetworkImporters Status `/tmp/jl_rYLObj/Project.toml` [4c88cf16] Aqua v0.8.16 [336ed68f] CSV v0.10.16 [479239e8] Catalyst v16.2.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [34004b35] HypergeometricFunctions v0.3.28 [7771a370] ModelingToolkitBase v1.44.0 [b1df2697] OrdinaryDiffEqTsit5 v2.0.1 [b4db0fb7] ReactionNetworkImporters v1.3.0 [1bc83da4] SafeTestsets v0.1.0 [d1185830] SymbolicUtils v4.35.3 [0c5d862f] Symbolics v7.28.1 [37e2e46d] LinearAlgebra v1.12.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_rYLObj/Manifest.toml` [47edcb42] ADTypes v1.22.0 [14f7f29c] AMD v0.5.3 [6e696c72] AbstractPlutoDingetjes v1.4.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.1 [4c88cf16] Aqua v0.8.16 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.25.0 [4c555306] ArrayLayouts v1.12.2 [aae01518] BandedMatrices v1.11.0 [e2ed5e7c] Bijections v0.2.2 [caf10ac8] BipartiteGraphs v0.1.7 [8e7c35d0] BlockArrays v1.9.3 [70df07ce] BracketingNonlinearSolve v1.12.1 [336ed68f] CSV v0.10.16 [479239e8] Catalyst v16.2.0 [944b1d66] CodecZlib v0.7.8 ⌅ [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.7 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.4 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v7.5.5 [459566f4] DiffEqCallbacks v4.18.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.18 [8d63f2c5] DispatchDoctor v0.4.28 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.8.0 [7c1d4256] DynamicPolynomials v0.6.6 [06fc5a27] DynamicQuantities v1.13.0 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.20 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v1.3.2 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.3.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.31.0 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.4.1 [a85aefff] FunctionMaps v0.1.2 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v1.9.1 [46192b85] GPUArraysCore v0.2.0 [86223c79] Graphs v1.14.0 [34004b35] HypergeometricFunctions v0.3.28 [3263718b] ImplicitDiscreteSolve v2.1.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [ae98c720] Jieko v0.2.1 [ccbc3e58] JumpProcesses v9.29.0 [ba0b0d4f] Krylov v0.10.6 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [87fe0de2] LineSearch v0.1.9 [7ed4a6bd] LinearSolve v3.86.0 [2ab3a3ac] LogExpFunctions v1.0.1 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [bb5d69b7] MaybeInplace v0.1.4 [e1d29d7a] Missings v1.2.0 [7771a370] ModelingToolkitBase v1.44.0 [2e0e35c7] Moshi v0.3.8 [46d2c3a1] MuladdMacro v0.2.4 [102ac46a] MultivariatePolynomials v0.5.19 [d8a4904e] MutableArithmetics v1.8.0 [77ba4419] NaNMath v1.1.4 [be0214bd] NonlinearSolveBase v2.31.0 [5959db7a] NonlinearSolveFirstOrder v2.1.1 [6fe1bfb0] OffsetArrays v1.17.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [bbf590c4] OrdinaryDiffEqCore v4.3.0 [b1df2697] OrdinaryDiffEqTsit5 v2.0.1 ⌅ [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.6 [e409e4f3] PoissonRandom v0.4.9 [2dfb63ee] PooledArrays v1.4.3 [d236fae5] PreallocationTools v1.2.0 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [27ebfcd6] Primes v0.5.7 [0c0d3e7f] PureKLU v1.0.1 [b4db0fb7] ReactionNetworkImporters v1.3.0 [988b38a3] ReadOnlyArrays v0.2.0 [795d4caa] ReadOnlyDicts v1.0.1 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v4.3.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.19 [9dfe8606] SCCNonlinearSolve v1.13.0 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v3.21.0 [19f34311] SciMLJacobianOperators v0.1.13 [a6db7da4] SciMLLogging v2.0.0 [c0aeaf25] SciMLOperators v1.22.0 [431bcebd] SciMLPublic v1.0.1 [53ae85a6] SciMLStructures v1.10.0 [91c51154] SentinelArrays v1.4.10 [efcf1570] Setfield v1.1.2 [727e6d20] SimpleNonlinearSolve v2.12.0 [699a6c99] SimpleTraits v0.9.6 [a2af1166] SortingAlgorithms v1.2.2 [a57abbd0] SparseColumnPivotedQR v2.1.1 [276daf66] SpecialFunctions v2.8.0 [0c0c59c1] StarAlgebras v0.3.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.4 [2efcf032] SymbolicIndexingInterface v0.3.48 [19f23fe9] SymbolicLimits v1.1.0 [d1185830] SymbolicUtils v4.35.3 [0c5d862f] Symbolics v7.28.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [ed4db957] TaskLocalValues v0.1.3 [8ea1fca8] TermInterface v2.0.0 [1c621080] TestItems v1.0.0 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [410a4b4d] Tricks v0.1.13 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [d30d5f5c] WeakCacheSets v0.1.0 [ea10d353] WeakRefStrings v1.4.3 [76eceee3] WorkerUtilities v1.6.1 [61579ee1] Ghostscript_jll v9.55.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.5+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [1317d2d5] oneTBB_jll v2022.3.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Quality Assurance | 10 10 9m09.9s 550.149519 seconds (72.96 M allocations: 5.103 GiB, 1.91% gc time, 20.65% compilation time: 8% of which was recompilation) Precompiling packages... 52628.2 ms ✓ PrettyTables 93686.8 ms ✓ DataFrames 2 dependencies successfully precompiled in 148 seconds. 34 already precompiled. 21 dependencies precompiled but different versions are currently loaded (Base64, Compat, Compat → CompatLinearAlgebraExt, DataStructures, Dates, InteractiveUtils, IteratorInterfaceExtensions, JuliaSyntaxHighlighting, LaTeXStrings, Markdown, OrderedCollections, PrecompileTools, Preferences, Printf, REPL, Reexport, Statistics, StyledStrings, TOML, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 7 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 3593.5 ms ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt 1 dependency successfully precompiled in 4 seconds. 40 already precompiled. 40 dependencies precompiled but different versions are currently loaded (Accessors, Accessors → LinearAlgebraExt, Adapt, ArrayInterface, ArrayInterface → ArrayInterfaceStaticArraysCoreExt, Base64, CompositionsBase, CompositionsBase → CompositionsBaseInverseFunctionsExt, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, Crayons, DataAPI, DataValueInterfaces, Dates, ExprTools, InteractiveUtils, InverseFunctions, InverseFunctions → InverseFunctionsDatesExt, IteratorInterfaceExtensions, JuliaSyntaxHighlighting, LaTeXStrings, MacroTools, Markdown, OrderedCollections, PrecompileTools, Preferences, PrettyTables, Printf, REPL, Reexport, RuntimeGeneratedFunctions, Serialization, StaticArraysCore, StringManipulation, StyledStrings, SymbolicIndexingInterface, TOML, TableTraits, Tables and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 8116.3 ms ✓ Latexify → DataFramesExt 1 dependency successfully precompiled in 9 seconds. 44 already precompiled. 43 dependencies precompiled but different versions are currently loaded (Base64, Compat, Compat → CompatLinearAlgebraExt, Crayons, DataAPI, DataFrames, DataStructures, DataValueInterfaces, Dates, Format, Future, Ghostscript_jll, InlineStrings, InteractiveUtils, InvertedIndices, IteratorInterfaceExtensions, JLLWrappers, JpegTurbo_jll, JuliaSyntaxHighlighting, LaTeXStrings, Latexify, MacroTools, Markdown, Missings, OrderedCollections, PooledArrays, PrecompileTools, Preferences, PrettyTables, Printf, REPL, Reexport, SentinelArrays, SortingAlgorithms, Statistics, StringManipulation, StyledStrings, TOML, TableTraits, Tables, UUIDs, Unicode and Zlib_jll). Restart julia to access the new versions. Otherwise, 2 dependents of these packages may trigger further precompilation to work with the unexpected versions. getting gdat file...done Scanning blocks...done Parsing parameters...done Creating parameters...done Parsing species...done Creating variables...done Setting up expression evaluation module...done Parsing groups...done Parsing functions...done Parsing and adding reactions...done Test Summary: | Pass Total Time BNG Birth-Death Test | 6 6 10m08.3s 608.291544 seconds (243.30 M allocations: 12.833 GiB, 1.63% gc time, 70.82% compilation time: <1% of which was recompilation) getting gdat file...done Scanning blocks...done Parsing parameters...done Creating parameters...done Parsing species...done Creating variables...done Setting up expression evaluation module...done Parsing groups...done Parsing functions...done Parsing and adding reactions...done Test Summary: | Pass Total Time BNG Repressilator Test | 6 6 15.5s 15.718852 seconds (6.49 M allocations: 353.279 MiB, 1.62% gc time, 98.47% compilation time: 1% of which was recompilation) getting gdat file...done Scanning blocks...done Parsing parameters...done Creating parameters...done Parsing species...done Creating variables...done Setting up expression evaluation module...done Parsing groups...done Parsing functions...done Parsing and adding reactions...done observed(rn) = Symbolics.Equation[] Test Summary: | Pass Total Time BNG Higher Order Test | 6 6 6.8s 6.766554 seconds (5.24 M allocations: 285.259 MiB, 98.67% compilation time: <1% of which was recompilation) Test Summary: | Pass Total Time BNG Functions/Sat/Fixed/Builtins Test | 2181 2181 2m28.4s 148.374606 seconds (75.50 M allocations: 4.006 GiB, 1.64% gc time, 99.00% compilation time: <1% of which was recompilation) Test Summary: | Pass Total Time BNG ODE Validation Test | 775 775 29.0s 29.045279 seconds (16.24 M allocations: 905.651 MiB, 6.48% gc time, 92.59% compilation time: 3% of which was recompilation) Test Summary: | Pass Total Time Matrix Input Test | 12 12 1m12.3s 72.307706 seconds (31.91 M allocations: 1.635 GiB, 0.84% gc time, 99.75% compilation time: <1% of which was recompilation) 1430.825903 seconds (451.71 M allocations: 25.089 GiB, 1.79% gc time, 56.79% compilation time: 2% of which was recompilation) Testing ReactionNetworkImporters tests passed Testing completed after 1434.47s PkgEval succeeded after 1828.32s