Package evaluation to test PoreMatMod on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T01:38:33.035


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.12`

Set-up completed after 8.3s


################################################################################
# Installation
#

Installing PoreMatMod...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [2de0d7f0] + PoreMatMod v0.2.20
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [ec485272] + ArnoldiMethod v0.4.0
⌅ [a963bdd2] + AtomsBase v0.4.2
  [99c8bb3a] + Bio3DView v1.0.0
  [d1d4a3ce] + BitFlags v0.1.10
  [336ed68f] + CSV v0.10.16
  [944b1d66] + CodecZlib v0.7.8
  [34da2185] + Compat v4.18.1
  [f0e56b4a] + ConcurrentUtilities v2.5.1
  [5218b696] + Configurations v0.17.6
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.2
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [ffbed154] + DocStringExtensions v0.9.5
  [460bff9d] + ExceptionUnwrapping v0.1.11
  [21656369] + ExpressionExplorer v1.1.4
  [55351af7] + ExproniconLite v0.10.14
  [5789e2e9] + FileIO v1.19.0
  [48062228] + FilePathsBase v0.9.24
  [828d9ff0] + GracefulPkg v2.4.3
⌃ [86223c79] + Graphs v1.13.1
⌅ [cd3eb016] + HTTP v1.11.0
  [ac1192a8] + HypertextLiteral v1.0.0
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.5
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [82899510] + IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] + JLD2 v0.4.55
  [692b3bcd] + JLLWrappers v1.8.0
  [8ac3fa9e] + LRUCache v1.6.2
  [b964fa9f] + LaTeXStrings v1.4.0
  [0e77f7df] + LazilyInitializedFields v1.3.0
⌅ [2ab3a3ac] + LogExpFunctions v0.3.29
  [e6f89c97] + LoggingExtras v1.2.0
  [6c6e2e6c] + MIMEs v1.1.0
  [1914dd2f] + MacroTools v0.5.16
  [36869731] + Malt v1.4.1
  [739be429] + MbedTLS v1.1.10
⌅ [626554b9] + MetaGraphs v0.7.2
  [e1d29d7a] + Missings v1.2.0
  [99f44e22] + MsgPack v1.2.1
  [4d8831e6] + OpenSSL v1.6.1
⌅ [bac558e1] + OrderedCollections v1.8.2
  [69de0a69] + Parsers v2.8.6
  [7b2266bf] + PeriodicTable v1.2.1
⌅ [c3e4b0f8] + Pluto v0.20.28
  [72656b73] + PlutoDependencyExplorer v1.2.2
  [2dfb63ee] + PooledArrays v1.4.3
  [2de0d7f0] + PoreMatMod v0.2.20
  [91cefc8d] + PrecompileSignatures v3.0.3
  [aea7be01] + PrecompileTools v1.3.4
  [21216c6a] + Preferences v1.5.2
  [08abe8d2] + PrettyTables v3.3.2
  [189a3867] + Reexport v1.2.2
  [2792f1a3] + RegistryInstances v0.1.0
  [05181044] + RelocatableFolders v1.0.1
  [ae029012] + Requires v1.3.1
  [6c6a2e73] + Scratch v1.3.0
  [91c51154] + SentinelArrays v1.4.10
  [777ac1f9] + SimpleBufferStream v1.2.0
  [699a6c99] + SimpleTraits v0.9.6
  [a2af1166] + SortingAlgorithms v1.2.2
  [90137ffa] + StaticArrays v1.9.18
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
⌅ [2913bbd2] + StatsBase v0.33.21
  [892a3eda] + StringManipulation v0.4.4
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [3bb67fe8] + TranscodingStreams v0.11.3
  [410a4b4d] + Tricks v0.1.13
  [5c2747f8] + URIs v1.6.1
  [1986cc42] + Unitful v1.28.0
  [a7773ee8] + UnitfulAtomic v1.0.0
  [ea10d353] + WeakRefStrings v1.4.3
  [76eceee3] + WorkerUtilities v1.6.1
  [ede5f01d] + Xtals v0.5.1
  [c8ffd9c3] + MbedTLS_jll v2.28.1010+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.1
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.15.0+0
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.5.6+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 6.13s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling packages...
  25558.1 ms  ✓ PlutoSliderServer
              ✗ Xtals
              ✗ PoreMatMod
  1 dependency successfully precompiled in 288 seconds. 154 already precompiled.
  24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 77 dependents of these packages may trigger further precompilation to work with the unexpected versions.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

PoreMatMod 

Failed to precompile PoreMatMod [2de0d7f0-0963-4438-8bc8-7e7ffe3dc69a] to "/home/pkgeval/.julia/compiled/v1.12/PoreMatMod/jl_BiQU5j".
WARNING: Imported binding AtomsBase.boundary_conditions was undeclared at import time during import to Xtals.
WARNING: Imported binding AtomsBase.species_type was undeclared at import time during import to Xtals.
ERROR: LoadError: invalid method definition in Xtals: exported function AtomsBase.species_type does not exist
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Xtals/paV65/src/crystal.jl:1364
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
  [3] top-level scope
    @ ~/.julia/packages/Xtals/paV65/src/Xtals.jl:22
  [4] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:3027
  [6] top-level scope
    @ stdin:5
  [7] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2873
  [9] include_string
    @ ./loading.jl:2883 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [11] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/Xtals/paV65/src/crystal.jl:1364
in expression starting at /home/pkgeval/.julia/packages/Xtals/paV65/src/Xtals.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Xtals [ede5f01d-793e-4c47-9885-c447d1f18d6d] to "/home/pkgeval/.julia/compiled/v1.12/Xtals/jl_ofAMah".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3314
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()
    @ Base ./loading.jl:2682
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117
  [7] #invokelatest_gr#239
    @ ./reflection.jl:1297 [inlined]
  [8] invokelatest_gr
    @ ./reflection.jl:1289 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3885
 [10] maybe_cachefile_lock
    @ ./loading.jl:3882 [inlined]
 [11] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2668
 [12] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2494
 [13] macro expansion
    @ ./loading.jl:2422 [inlined]
 [14] macro expansion
    @ ./lock.jl:376 [inlined]
 [15] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2387
 [16] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2363
 [17] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [18] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3027
 [19] top-level scope
    @ stdin:5
 [20] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [21] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2873
 [22] include_string
    @ ./loading.jl:2883 [inlined]
 [23] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [24] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/PoreMatMod/R2OKZ/src/PoreMatMod.jl:1
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:34

Precompilation failed after 307.44s



################################################################################
# Testing
#

     Testing PoreMatMod
      Status `/tmp/jl_t04VV6/Project.toml`
  [e30172f5] Documenter v1.17.0
⌃ [86223c79] Graphs v1.13.1
⌅ [626554b9] MetaGraphs v0.7.2
⌃ [2fc8631c] PlutoSliderServer v1.8.0
  [7f904dfe] PlutoUI v0.7.83
  [2de0d7f0] PoreMatMod v0.2.20
  [b77e0a4c] InteractiveUtils v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [d6f4376e] Markdown v1.11.0
  [44cfe95a] Pkg v1.12.1
  [de0858da] Printf v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_t04VV6/Manifest.toml`
  [a4c015fc] ANSIColoredPrinters v0.0.1
  [6e696c72] AbstractPlutoDingetjes v1.4.0
  [1520ce14] AbstractTrees v0.4.5
  [ec485272] ArnoldiMethod v0.4.0
⌅ [a963bdd2] AtomsBase v0.4.2
  [c9fd44ac] BetterFileWatching v0.1.6
  [99c8bb3a] Bio3DView v1.0.0
  [d1d4a3ce] BitFlags v0.1.10
  [336ed68f] CSV v0.10.16
  [944b1d66] CodecZlib v0.7.8
  [3da002f7] ColorTypes v0.12.1
  [34da2185] Compat v4.18.1
  [f0e56b4a] ConcurrentUtilities v2.5.1
  [5218b696] Configurations v0.17.6
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.8.2
⌅ [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [ffbed154] DocStringExtensions v0.9.5
  [e30172f5] Documenter v1.17.0
  [460bff9d] ExceptionUnwrapping v0.1.11
  [21656369] ExpressionExplorer v1.1.4
  [55351af7] ExproniconLite v0.10.14
  [5789e2e9] FileIO v1.19.0
  [48062228] FilePathsBase v0.9.24
⌅ [53c48c17] FixedPointNumbers v0.8.6
  [ff7dd447] FromFile v0.1.6
  [d7ba0133] Git v1.5.0
  [c27321d9] Glob v1.5.0
  [828d9ff0] GracefulPkg v2.4.3
⌃ [86223c79] Graphs v1.13.1
⌅ [cd3eb016] HTTP v1.11.0
  [47d2ed2b] Hyperscript v0.0.5
  [ac1192a8] HypertextLiteral v1.0.0
  [b5f81e59] IOCapture v1.0.0
  [d25df0c9] Inflate v0.1.5
  [842dd82b] InlineStrings v1.4.5
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.6
  [82899510] IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] JLD2 v0.4.55
  [692b3bcd] JLLWrappers v1.8.0
  [682c06a0] JSON v1.6.1
  [8ac3fa9e] LRUCache v1.6.2
  [b964fa9f] LaTeXStrings v1.4.0
  [0e77f7df] LazilyInitializedFields v1.3.0
⌅ [1d6d02ad] LeftChildRightSiblingTrees v0.2.1
⌅ [2ab3a3ac] LogExpFunctions v0.3.29
  [e6f89c97] LoggingExtras v1.2.0
  [6c6e2e6c] MIMEs v1.1.0
  [1914dd2f] MacroTools v0.5.16
  [36869731] Malt v1.4.1
  [d0879d2d] MarkdownAST v0.1.3
  [739be429] MbedTLS v1.1.10
⌅ [626554b9] MetaGraphs v0.7.2
  [e1d29d7a] Missings v1.2.0
  [99f44e22] MsgPack v1.2.1
  [4d8831e6] OpenSSL v1.6.1
⌅ [bac558e1] OrderedCollections v1.8.2
  [69de0a69] Parsers v2.8.6
  [7b2266bf] PeriodicTable v1.2.1
⌅ [c3e4b0f8] Pluto v0.20.28
  [72656b73] PlutoDependencyExplorer v1.2.2
⌃ [2fc8631c] PlutoSliderServer v1.8.0
  [7f904dfe] PlutoUI v0.7.83
  [2dfb63ee] PooledArrays v1.4.3
  [2de0d7f0] PoreMatMod v0.2.20
  [91cefc8d] PrecompileSignatures v3.0.3
  [aea7be01] PrecompileTools v1.3.4
  [21216c6a] Preferences v1.5.2
  [08abe8d2] PrettyTables v3.3.2
  [33c8b6b6] ProgressLogging v0.1.6
  [189a3867] Reexport v1.2.2
  [2792f1a3] RegistryInstances v0.1.0
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.1
  [6c6a2e73] Scratch v1.3.0
  [91c51154] SentinelArrays v1.4.10
  [777ac1f9] SimpleBufferStream v1.2.0
  [699a6c99] SimpleTraits v0.9.6
  [a2af1166] SortingAlgorithms v1.2.2
  [90137ffa] StaticArrays v1.9.18
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
⌅ [2913bbd2] StatsBase v0.33.21
  [892a3eda] StringManipulation v0.4.4
  [ec057cc2] StructUtils v2.8.2
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [5d786b92] TerminalLoggers v0.1.7
  [3bb67fe8] TranscodingStreams v0.11.3
  [410a4b4d] Tricks v0.1.13
  [5c2747f8] URIs v1.6.1
  [1986cc42] Unitful v1.28.0
  [a7773ee8] UnitfulAtomic v1.0.0
  [ea10d353] WeakRefStrings v1.4.3
  [76eceee3] WorkerUtilities v1.6.1
  [ede5f01d] Xtals v0.5.1
  [04572ae6] Deno_jll v2.8.3+0
  [2e619515] Expat_jll v2.8.1+0
  [020c3dae] Git_LFS_jll v3.7.1+0
  [f8c6e375] Git_jll v2.54.0+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [c8ffd9c3] MbedTLS_jll v2.28.1010+0
  [9bd350c2] OpenSSH_jll v10.3.1+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.12.1
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.15.0+0
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.11.4
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.5.6+0
  [efcefdf7] PCRE2_jll v10.44.0+1
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
Precompiling packages...
   5131.4 ms  ✓ GracefulPkg
  11758.8 ms  ✓ StatsBase
  87206.8 ms  ✓ DataFrames
   5512.8 ms  ✓ AtomsBase
  30595.3 ms  ✓ HTTP
  48769.6 ms  ✓ JLD2
  30166.9 ms  ✓ CSV
   5807.6 ms  ✓ FileIO → HTTPExt
  65989.3 ms  ✓ Pluto
  62231.1 ms  ✓ MetaGraphs
              ✗ Xtals
Info Given PoreMatMod was explicitly requested, output will be shown live 
WARNING: Imported binding AtomsBase.boundary_conditions was undeclared at import time during import to Xtals.
WARNING: Imported binding AtomsBase.species_type was undeclared at import time during import to Xtals.
ERROR: LoadError: invalid method definition in Xtals: exported function AtomsBase.species_type does not exist
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Xtals/paV65/src/crystal.jl:1364
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
  [3] top-level scope
    @ ~/.julia/packages/Xtals/paV65/src/Xtals.jl:22
  [4] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:3027
  [6] top-level scope
    @ stdin:5
  [7] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2873
  [9] include_string
    @ ./loading.jl:2883 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [11] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/Xtals/paV65/src/crystal.jl:1364
in expression starting at /home/pkgeval/.julia/packages/Xtals/paV65/src/Xtals.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Xtals [ede5f01d-793e-4c47-9885-c447d1f18d6d] to "/home/pkgeval/.julia/compiled/v1.12/Xtals/jl_6CEOw4".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3314
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()
    @ Base ./loading.jl:2682
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117
  [7] #invokelatest_gr#239
    @ ./reflection.jl:1297 [inlined]
  [8] invokelatest_gr
    @ ./reflection.jl:1289 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3885
 [10] maybe_cachefile_lock
    @ ./loading.jl:3882 [inlined]
 [11] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2668
 [12] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2494
 [13] macro expansion
    @ ./loading.jl:2422 [inlined]
 [14] macro expansion
    @ ./lock.jl:376 [inlined]
 [15] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2387
 [16] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2363
 [17] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [18] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3027
 [19] top-level scope
    @ stdin:5
 [20] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [21] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2873
 [22] include_string
    @ ./loading.jl:2883 [inlined]
 [23] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [24] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/PoreMatMod/R2OKZ/src/PoreMatMod.jl:1
in expression starting at stdin:5
              ✗ PoreMatMod
  10 dependencies successfully precompiled in 553 seconds. 115 already precompiled.
  39 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, CodecZlib, Dates, DocStringExtensions, Downloads, InteractiveUtils, JLLWrappers, JuliaSyntaxHighlighting, LazilyInitializedFields, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Parsers, Pkg, Pkg → REPLExt, PrecompileTools, Preferences, Printf, REPL, RegistryInstances, Serialization, StyledStrings, TOML, Tar, Test, TranscodingStreams, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 53 dependents of these packages may trigger further precompilation to work with the unexpected versions.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

PoreMatMod 

Failed to precompile PoreMatMod [2de0d7f0-0963-4438-8bc8-7e7ffe3dc69a] to "/home/pkgeval/.julia/compiled/v1.12/PoreMatMod/jl_JSqrRk".
WARNING: Imported binding AtomsBase.boundary_conditions was undeclared at import time during import to Xtals.
WARNING: Imported binding AtomsBase.species_type was undeclared at import time during import to Xtals.
ERROR: LoadError: invalid method definition in Xtals: exported function AtomsBase.species_type does not exist
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Xtals/paV65/src/crystal.jl:1364
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
  [3] top-level scope
    @ ~/.julia/packages/Xtals/paV65/src/Xtals.jl:22
  [4] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:3027
  [6] top-level scope
    @ stdin:5
  [7] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2873
  [9] include_string
    @ ./loading.jl:2883 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [11] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/Xtals/paV65/src/crystal.jl:1364
in expression starting at /home/pkgeval/.julia/packages/Xtals/paV65/src/Xtals.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Xtals [ede5f01d-793e-4c47-9885-c447d1f18d6d] to "/home/pkgeval/.julia/compiled/v1.12/Xtals/jl_6CEOw4".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3314
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()
    @ Base ./loading.jl:2682
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117
  [7] #invokelatest_gr#239
    @ ./reflection.jl:1297 [inlined]
  [8] invokelatest_gr
    @ ./reflection.jl:1289 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3885
 [10] maybe_cachefile_lock
    @ ./loading.jl:3882 [inlined]
 [11] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2668
 [12] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2494
 [13] macro expansion
    @ ./loading.jl:2422 [inlined]
 [14] macro expansion
    @ ./lock.jl:376 [inlined]
 [15] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2387
 [16] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2363
 [17] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [18] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3027
 [19] top-level scope
    @ stdin:5
 [20] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [21] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2873
 [22] include_string
    @ ./loading.jl:2883 [inlined]
 [23] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [24] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/PoreMatMod/R2OKZ/src/PoreMatMod.jl:1
in expression starting at stdin:
in expression starting at /home/pkgeval/.julia/packages/PoreMatMod/R2OKZ/test/runtests.jl:11

Testing failed after 569.78s

ERROR: LoadError: Package PoreMatMod errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:317
 [12] _start()
    @ Base ./client.jl:550
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 910.9s: package fails to precompile