Package evaluation to test PointNeighbors on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T15:32:18.341 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.96s ################################################################################ # Installation # Installing PointNeighbors... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [1c4d5385] + PointNeighbors v0.6.6 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.6.1 [4fba245c] + ArrayInterface v7.25.0 [a9b6321e] + Atomix v1.1.3 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.7 [fb6a15b2] + CloseOpenIntervals v0.1.13 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [adafc99b] + CpuId v0.3.1 [46192b85] + GPUArraysCore v0.2.0 [615f187c] + IfElse v0.1.1 [63c18a36] + KernelAbstractions v0.9.41 [10f19ff3] + LayoutPointers v0.1.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [1c4d5385] + PointNeighbors v0.6.6 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [431bcebd] + SciMLPublic v1.0.1 [aedffcd0] + Static v1.4.0 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [7792a7ef] + StrideArraysCore v0.5.9 [8290d209] + ThreadingUtilities v0.5.6 [013be700] + UnsafeAtomics v0.3.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 5.56s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 3879.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsKernelAbstractionsExt 8816.8 ms ✓ PointNeighbors 17307.8 ms ✓ DiffEqCallbacks 476147.6 ms ✓ TrixiParticles 4 dependencies successfully precompiled in 521 seconds. 340 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 213 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 525.87s ################################################################################ # Testing # Testing PointNeighbors Status `/tmp/jl_ZVseqF/Project.toml` [6e4b80f9] BenchmarkTools v1.8.0 [91a5bcdd] Plots v1.41.6 [1c4d5385] PointNeighbors v0.6.6 ⌅ [66699cd8] TrixiParticles v0.4.4 [0a316866] TrixiTest v0.2.2 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ZVseqF/Manifest.toml` [47edcb42] ADTypes v1.22.0 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.25.0 [a9b6321e] Atomix v1.1.3 [6e4b80f9] BenchmarkTools v1.8.0 [d1d4a3ce] BitFlags v0.1.10 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.12.1 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.16 [3cb15238] ChangePrecision v1.1.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 12735.1 ms ✓ BenchmarkTools 1 dependency successfully precompiled in 13 seconds. 16 already precompiled. 11 dependencies precompiled but different versions are currently loaded (Compat, Compat → CompatLinearAlgebraExt, Dates, Logging, PrecompileTools, Preferences, Printf, Statistics, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 5 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1505.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsStatisticsExt 95195.8 ms ✓ DataFrames 33383.6 ms ✓ SciMLBase 2645.8 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 5110.3 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 8881.1 ms ✓ SciMLJacobianOperators 17685.1 ms ✓ NonlinearSolveBase 10309.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 8205.7 ms ✓ BracketingNonlinearSolve 3560.3 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 7875.7 ms ✓ DiffEqBase 7728.7 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 11979.0 ms ✓ DiffEqCallbacks 213286.2 ms ✓ TrixiParticles 14 dependencies successfully precompiled in 429 seconds. 188 already precompiled. 57 dependencies precompiled but different versions are currently loaded (Adapt, Adapt → AdaptStaticArraysExt, ArrayInterface, ArrayInterface → ArrayInterfaceGPUArraysCoreExt, ArrayInterface → ArrayInterfaceStaticArraysCoreExt, Atomix, Base64, BitTwiddlingConvenienceFunctions, CPUSummary, ChangePrecision, CloseOpenIntervals, CommonWorldInvalidations, Compat, Compat → CompatLinearAlgebraExt, CpuId, Dates, ExprTools, GPUArraysCore, IfElse, InteractiveUtils, JSON, JuliaSyntaxHighlighting, KernelAbstractions, KernelAbstractions → LinearAlgebraExt, LayoutPointers, Logging, MacroTools, ManualMemory, Markdown, Parsers, PointNeighbors, Polyester, PolyesterWeave, PrecompileTools, Preferences, Printf, Reexport, SIMDTypes, SciMLPublic, Serialization, Static, StaticArrayInterface, StaticArrayInterface → StaticArrayInterfaceStaticArraysExt, StaticArrays, StaticArrays → StaticArraysStatisticsExt, StaticArraysCore, Statistics, StrideArraysCore, StructUtils, StructUtils → StructUtilsStaticArraysCoreExt, StyledStrings, TOML, ThreadingUtilities, TimerOutputs, TrixiBase, UUIDs and UnsafeAtomics). Restart julia to access the new versions. Otherwise, 80 dependents of these packages may trigger further precompilation to work with the unexpected versions. WARNING: Method definition point_cloud(Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/p5sRl/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.point_cloud), Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/p5sRl/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition perturb!(Any, Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/p5sRl/test/point_cloud.jl:27 overwritten on the same line (check for duplicate calls to `include`). Precompiling packages... 8339.3 ms ✓ StatsBase 9762.7 ms ✓ Latexify 9681.3 ms ✓ RecipesPipeline 2620.7 ms ✓ Latexify → SparseArraysExt 122382.2 ms ✓ Plots 5 dependencies successfully precompiled in 154 seconds. 175 already precompiled. 59 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, CodecZlib, CompilerSupportLibraries_jll, DataAPI, DataStructures, Dates, DelimitedFiles, DocStringExtensions, Downloads, InteractiveUtils, IrrationalConstants, JLLWrappers, JSON, JuliaSyntaxHighlighting, LaTeXStrings, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Libiconv_jll, LogExpFunctions, Logging, LoggingExtras, MacroTools, Markdown, Missings, Mmap, MozillaCACerts_jll, NaNMath, NetworkOptions, OpenLibm_jll, OpenSSL_jll, OrderedCollections, Parsers, Pkg, Pkg → REPLExt, PrecompileTools, Preferences, Printf, REPL, RecipesBase, Reexport, Requires, Serialization, SortingAlgorithms, Statistics, StructUtils, StyledStrings, TOML, Tar, Test, TranscodingStreams, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 106 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 3312.5 ms ✓ KernelAbstractions → SparseArraysExt 1 dependency successfully precompiled in 4 seconds. 38 already precompiled. 34 dependencies precompiled but different versions are currently loaded (Adapt, Adapt → AdaptSparseArraysExt, Adapt → AdaptStaticArraysExt, Atomix, Base64, Dates, InteractiveUtils, JLLWrappers, JpegTurbo_jll, JuliaSyntaxHighlighting, KernelAbstractions, KernelAbstractions → LinearAlgebraExt, LaTeXStrings, MacroTools, Markdown, OrderedCollections, PrecompileTools, Preferences, Printf, Requires, Serialization, SparseArrays, StaticArrays, StaticArrays → StaticArraysStatisticsExt, StaticArraysCore, Statistics, Statistics → SparseArraysExt, StyledStrings, SuiteSparse_jll, TOML, UUIDs, Unicode, UnsafeAtomics and Zlib_jll). Restart julia to access the new versions. Otherwise, 4 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 2260.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 32 already precompiled. 32 dependencies precompiled but different versions are currently loaded (Accessors, Accessors → LinearAlgebraExt, Adapt, Adapt → AdaptSparseArraysExt, ArrayInterface, ArrayInterface → ArrayInterfaceGPUArraysCoreExt, ArrayInterface → ArrayInterfaceSparseArraysExt, ArrayInterface → ArrayInterfaceStaticArraysCoreExt, CompositionsBase, CompositionsBase → CompositionsBaseInverseFunctionsExt, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, Dates, DocStringExtensions, ExprTools, GPUArraysCore, InverseFunctions, InverseFunctions → InverseFunctionsDatesExt, MacroTools, PrecompileTools, Preferences, Printf, RecipesBase, RecursiveArrayTools, RuntimeGeneratedFunctions, Serialization, SparseArrays, StaticArraysCore, SuiteSparse_jll, SymbolicIndexingInterface, TOML and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1727.7 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 21 already precompiled. 21 dependencies precompiled but different versions are currently loaded (Accessors, Accessors → LinearAlgebraExt, Adapt, Adapt → AdaptSparseArraysExt, ArrayInterface, ArrayInterface → ArrayInterfaceSparseArraysExt, CompositionsBase, CompositionsBase → CompositionsBaseInverseFunctionsExt, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, Dates, DocStringExtensions, InverseFunctions, InverseFunctions → InverseFunctionsDatesExt, MacroTools, Printf, SciMLOperators, Serialization, SparseArrays, SuiteSparse_jll and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1451.6 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 9 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Adapt, Adapt → AdaptSparseArraysExt, ArrayInterface, ArrayInterface → ArrayInterfaceSparseArraysExt, MacroTools, MaybeInplace, Serialization, SparseArrays and SuiteSparse_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 4643.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 1 dependency successfully precompiled in 5 seconds. 87 already precompiled. 87 dependencies precompiled but different versions are currently loaded (ADTypes, ADTypes → ADTypesConstructionBaseExt, ADTypes → ADTypesEnzymeCoreExt, Accessors, Accessors → LinearAlgebraExt, Adapt, Adapt → AdaptSparseArraysExt, ArrayInterface, ArrayInterface → ArrayInterfaceGPUArraysCoreExt, ArrayInterface → ArrayInterfaceSparseArraysExt, ArrayInterface → ArrayInterfaceStaticArraysCoreExt, Base64, CommonSolve, CommonSolve → CommonSolveEnzymeCoreExt, Compat, Compat → CompatLinearAlgebraExt, CompositionsBase, CompositionsBase → CompositionsBaseInverseFunctionsExt, ConcreteStructs, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, Dates, DifferentiationInterface, DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt, DifferentiationInterface → DifferentiationInterfaceSparseArraysExt, Distributed, DocStringExtensions, EnumX, EnzymeCore, EnzymeCore → AdaptExt, ExprTools, ExproniconLite, FastClosures, FunctionWrappers, FunctionWrappersWrappers, Future, GPUArraysCore, InteractiveUtils, InverseFunctions, InverseFunctions → InverseFunctionsDatesExt, IrrationalConstants, IteratorInterfaceExtensions, Jieko, JuliaSyntaxHighlighting, LogExpFunctions, LogExpFunctions → LogExpFunctionsInverseFunctionsExt, Logging, LoggingExtras, MacroTools, Markdown, MaybeInplace, MaybeInplace → MaybeInplaceSparseArraysExt, Moshi, NonlinearSolveBase, PreallocationTools, PrecompileTools, Preferences, Printf, RecipesBase, RecursiveArrayTools, RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt, RecursiveArrayTools → RecursiveArrayToolsStatisticsExt, Reexport, RuntimeGeneratedFunctions, SciMLBase, SciMLBase → SciMLBaseDifferentiationInterfaceExt, SciMLJacobianOperators, SciMLLogging, SciMLOperators, SciMLOperators → SciMLOperatorsSparseArraysExt, SciMLOperators → SciMLOperatorsStaticArraysCoreExt, SciMLPublic, SciMLStructures, Serialization, Setfield, SparseArrays, StaticArraysCore, Statistics, Statistics → SparseArraysExt, StyledStrings, SuiteSparse_jll, SymbolicIndexingInterface, TOML, TimerOutputs, TruncatedStacktraces, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 4703.8 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 1 dependency successfully precompiled in 5 seconds. 98 already precompiled. 98 dependencies precompiled but different versions are currently loaded (ADTypes, ADTypes → ADTypesConstructionBaseExt, ADTypes → ADTypesEnzymeCoreExt, Accessors, Accessors → LinearAlgebraExt, Adapt, Adapt → AdaptSparseArraysExt, ArrayInterface, ArrayInterface → ArrayInterfaceGPUArraysCoreExt, ArrayInterface → ArrayInterfaceSparseArraysExt, ArrayInterface → ArrayInterfaceStaticArraysCoreExt, Base64, BracketingNonlinearSolve, CommonSolve, CommonSolve → CommonSolveEnzymeCoreExt, CommonWorldInvalidations, Compat, Compat → CompatLinearAlgebraExt, CompositionsBase, CompositionsBase → CompositionsBaseInverseFunctionsExt, ConcreteStructs, ConstructionBase, ConstructionBase → ConstructionBaseLinearAlgebraExt, Dates, DiffEqBase, DifferentiationInterface, DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt, DifferentiationInterface → DifferentiationInterfaceSparseArraysExt, Distributed, DocStringExtensions, EnumX, EnzymeCore, EnzymeCore → AdaptExt, ExprTools, ExproniconLite, FastBroadcast, FastBroadcast → FastBroadcastStaticExt, FastClosures, FastPower, FunctionWrappers, FunctionWrappersWrappers, Future, GPUArraysCore, IfElse, InteractiveUtils, InverseFunctions, InverseFunctions → InverseFunctionsDatesExt, IrrationalConstants, IteratorInterfaceExtensions, Jieko, JuliaSyntaxHighlighting, LogExpFunctions, LogExpFunctions → LogExpFunctionsInverseFunctionsExt, Logging, LoggingExtras, MacroTools, Markdown, MaybeInplace, MaybeInplace → MaybeInplaceSparseArraysExt, Moshi, MuladdMacro, NonlinearSolveBase, NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt, PreallocationTools, PrecompileTools, Preferences, Printf, RecipesBase, RecursiveArrayTools, RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt, RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt, RecursiveArrayTools → RecursiveArrayToolsStatisticsExt, Reexport, RuntimeGeneratedFunctions, SciMLBase, SciMLBase → SciMLBaseDifferentiationInterfaceExt, SciMLJacobianOperators, SciMLLogging, SciMLOperators, SciMLOperators → SciMLOperatorsSparseArraysExt, SciMLOperators → SciMLOperatorsStaticArraysCoreExt, SciMLPublic, SciMLStructures, Serialization, Setfield, SparseArrays, Static, StaticArraysCore, Statistics, Statistics → SparseArraysExt, StyledStrings, SuiteSparse_jll, SymbolicIndexingInterface, TOML, TimerOutputs, TruncatedStacktraces, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1474.6 ms ✓ ColorVectorSpace → SpecialFunctionsExt 1 dependency successfully precompiled in 2 seconds. 20 already precompiled. 20 dependencies precompiled but different versions are currently loaded (ColorTypes, ColorVectorSpace, CompilerSupportLibraries_jll, Dates, DocStringExtensions, FixedPointNumbers, IrrationalConstants, JLLWrappers, LogExpFunctions, OpenLibm_jll, OpenSpecFun_jll, Preferences, Printf, Requires, SpecialFunctions, Statistics, TOML, TensorCore, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 6302.3 ms ✓ FileIO → HTTPExt 20994.9 ms ✓ Plots → FileIOExt 2 dependencies successfully precompiled in 28 seconds. 181 already precompiled. 160 dependencies precompiled but different versions are currently loaded (AliasTables, ArgTools, Base64, Bzip2_jll, Cairo_jll, CodecZlib, ColorSchemes, ColorTypes, ColorTypes → StyledStringsExt, ColorVectorSpace, Colors, CompilerSupportLibraries_jll, DataAPI, DataStructures, Dates, Dbus_jll, DelimitedFiles, DocStringExtensions, Downloads, Expat_jll, FFMPEG, FFMPEG_jll, FileIO, FixedPointNumbers, Fontconfig_jll, FreeType2_jll, FriBidi_jll, GLFW_jll, GR, GR_jll, GettextRuntime_jll, Glib_jll, Graphite2_jll, HarfBuzz_jll, InteractiveUtils, IrrationalConstants, JLFzf, JLLWrappers, JSON, JpegTurbo_jll, JuliaSyntaxHighlighting, LAME_jll, LERC_jll, LaTeXStrings, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Libffi_jll, Libglvnd_jll, Libiconv_jll, Libmount_jll, Libtiff_jll, Libuuid_jll, LogExpFunctions, Logging, LoggingExtras, MacroTools, Markdown, Measures, Missings, Mmap, MozillaCACerts_jll, NaNMath, NetworkOptions, Ogg_jll, OpenLibm_jll, OpenSSL_jll, Opus_jll, OrderedCollections, PCRE2_jll, Pango_jll, Parsers, Pixman_jll, Pkg, Pkg → REPLExt, PlotThemes, PlotUtils, Plots, PrecompileTools, Preferences, Printf, PtrArrays, Qt6Base_jll, REPL, RecipesBase, RecipesPipeline, Reexport, RelocatableFolders, Requires, Scratch, Serialization, Showoff, SortingAlgorithms, SparseArrays, StableRNGs, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StructUtils, StyledStrings, SuiteSparse_jll, TOML, Tar, TensorCore, Test, TranscodingStreams, UUIDs, Unicode, UnicodeFun, Unzip, Vulkan_Loader_jll, Wayland_jll, XZ_jll, Xorg_libICE_jll, Xorg_libSM_jll, Xorg_libX11_jll, Xorg_libXau_jll, Xorg_libXcursor_jll, Xorg_libXdmcp_jll, Xorg_libXext_jll, Xorg_libXfixes_jll, Xorg_libXi_jll, Xorg_libXinerama_jll, Xorg_libXrandr_jll, Xorg_libXrender_jll, Xorg_libpciaccess_jll, Xorg_libxcb_jll, Xorg_libxkbfile_jll, Xorg_xcb_util_cursor_jll, Xorg_xcb_util_image_jll, Xorg_xcb_util_jll, Xorg_xcb_util_keysyms_jll, Xorg_xcb_util_renderutil_jll, Xorg_xcb_util_wm_jll, Xorg_xkbcomp_jll, Xorg_xkeyboard_config_jll, Xorg_xtrans_jll, Zlib_jll, Zstd_jll, eudev_jll, fzf_jll, libaom_jll, libass_jll, libdecor_jll, libdrm_jll, libevdev_jll, libfdk_aac_jll, libinput_jll, libpng_jll, libva_jll, libvorbis_jll, mtdev_jll, nghttp2_jll, p7zip_jll, x264_jll, x265_jll and xkbcommon_jll). Restart julia to access the new versions. Otherwise, 17 dependents of these packages may trigger further precompilation to work with the unexpected versions. WARNING: Method definition point_cloud(Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/p5sRl/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.point_cloud), Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/p5sRl/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition perturb!(Any, Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/p5sRl/test/point_cloud.jl:27 overwritten on the same line (check for duplicate calls to `include`). GridNeighborhoodSearch with 50 = 50 particles finished in 5.852 μs (117.040 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 5.682 μs (113.640 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 2.571 μs (51.422 ns per particle) GridNeighborhoodSearch with 200 = 200 particles finished in 23.470 μs (117.350 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 22.950 μs (114.750 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 10.280 μs (51.400 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 4.864 μs (97.286 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 2.287 μs (45.733 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 22.980 μs (114.900 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 10.230 μs (51.150 ns per particle) GridNeighborhoodSearch with 50 = 50 particles finished in 9.960 μs (199.200 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 9.620 μs (192.400 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 6.574 μs (131.486 ns per particle) GridNeighborhoodSearch with 200 = 200 particles finished in 30.280 μs (151.400 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 39.160 μs (195.800 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 27.180 μs (135.900 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 9.550 μs (191.000 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 6.508 μs (130.160 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 31.460 μs (157.300 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 27.510 μs (137.550 ns per particle) GridNeighborhoodSearch with 50 = 50 particles finished in 24.040 μs (480.800 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 16.140 μs (322.800 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 14.150 μs (283.000 ns per particle) GridNeighborhoodSearch with 200 = 200 particles finished in 64.370 μs (321.850 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 66.390 μs (331.950 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 91.670 μs (458.350 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 24.679 μs (493.580 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 22.360 μs (447.200 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 99.979 μs (499.895 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 90.410 μs (452.050 ns per particle) GridNeighborhoodSearch with 50 = 50 particles finished in 31.850 μs (637.000 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 20.970 μs (419.400 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 20.270 μs (405.400 ns per particle) GridNeighborhoodSearch with 200 = 200 particles finished in 129.650 μs (648.250 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 129.340 μs (646.700 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 83.040 μs (415.200 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 30.660 μs (613.200 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 20.160 μs (403.200 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 129.600 μs (648.000 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 82.600 μs (413.000 ns per particle) GridNeighborhoodSearch with 50 = 50 particles finished in 21.310 μs (426.200 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 23.640 μs (472.800 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 17.970 μs (359.400 ns per particle) GridNeighborhoodSearch with 200 = 200 particles finished in 93.090 μs (465.450 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 79.850 μs (399.250 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 61.990 μs (309.950 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 23.680 μs (473.600 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 17.900 μs (358.000 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 99.130 μs (495.650 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 75.560 μs (377.800 ns per particle) GridNeighborhoodSearch with 50 = 50 particles finished in 3.879 μs (77.571 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 1.494 μs (29.880 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 25.070 μs (501.400 ns per particle) GridNeighborhoodSearch with 200 = 200 particles finished in 15.120 μs (75.600 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 5.784 μs (28.920 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 118.430 μs (592.150 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 1.520 μs (30.400 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 29.240 μs (584.800 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 5.854 μs (29.270 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 97.500 μs (487.500 ns per particle) GridNeighborhoodSearch with 50 = 50 particles finished in 758.500 ns (15.170 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 1.588 μs (31.767 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 26.135 μs (522.700 ns per particle) GridNeighborhoodSearch with 200 = 200 particles finished in 2.745 μs (13.725 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 5.990 μs (29.950 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 93.035 μs (465.175 ns per particle) GridNeighborhoodSearch with FullGridCellList with 50 = 50 particles finished in 1.602 μs (32.038 ns per particle) PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 27.355 μs (547.100 ns per particle) GridNeighborhoodSearch with FullGridCellList with 200 = 200 particles finished in 6.280 μs (31.400 ns per particle) PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 105.210 μs (526.050 ns per particle) GridNeighborhoodSearch with 10x10 = 100 particles finished in 73.750 μs (737.500 ns per particle) GridNeighborhoodSearch with FullGridCellList with 10x10 = 100 particles finished in 70.020 μs (700.200 ns per particle) PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 22.900 μs (229.000 ns per particle) GridNeighborhoodSearch with 20x20 = 400 particles finished in 557.470 μs (1.394 μs per particle) GridNeighborhoodSearch with FullGridCellList with 20x20 = 400 particles finished in 537.080 μs (1.343 μs per particle) PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 108.030 μs (270.075 ns per particle) GridNeighborhoodSearch with FullGridCellList with 10x10 = 100 particles finished in 52.900 μs (529.000 ns per particle) PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 22.660 μs (226.600 ns per particle) GridNeighborhoodSearch with FullGridCellList with 20x20 = 400 particles finished in 423.230 μs (1.058 μs per particle) PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 93.920 μs (234.800 ns per particle) GridNeighborhoodSearch with 10x10 = 100 particles finished in 157.330 μs (1.573 μs per particle) GridNeighborhoodSearch with FullGridCellList with 10x10 = 100 particles finished in 129.230 μs (1.292 μs per particle) PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 104.660 μs (1.047 μs per particle) GridNeighborhoodSearch with 20x20 = 400 particles finished in 943.930 μs (2.360 μs per particle) GridNeighborhoodSearch with FullGridCellList with 20x20 = 400 particles finished in 905.080 μs (2.263 μs per particle) PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 442.989 μs (1.107 μs per particle) GridNeighborhoodSearch with FullGridCellList with 10x10 = 100 particles finished in 141.390 μs (1.414 μs per particle) PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 102.930 μs (1.029 μs per particle) GridNeighborhoodSearch with FullGridCellList with 20x20 = 400 particles finished in 906.620 μs (2.267 μs per particle) PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 510.680 μs (1.277 μs per particle) GridNeighborhoodSearch with 10x10 = 100 particles finished in 215.460 μs (2.155 μs per particle) GridNeighborhoodSearch with FullGridCellList with 10x10 = 100 particles finished in 214.560 μs (2.146 μs per particle) PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 280.110 μs (2.801 μs per particle) GridNeighborhoodSearch with 20x20 = 400 particles finished in 1.887 ms (4.718 μs per particle) GridNeighborhoodSearch with FullGridCellList with 20x20 = 400 particles finished in 1.393 ms (3.481 μs per particle) PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 1.405 ms (3.513 μs per particle) GridNeighborhoodSearch with FullGridCellList with 10x10 = 100 particles finished in 350.890 μs (3.509 μs per particle) PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 281.540 μs (2.815 μs per particle) GridNeighborhoodSearch with FullGridCellList with 20x20 = 400 particles finished in 1.881 ms (4.703 μs per particle) PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 1.404 ms (3.510 μs per particle) GridNeighborhoodSearch with 10x10 = 100 particles finished in 266.690 μs (2.667 μs per particle) GridNeighborhoodSearch with FullGridCellList with 10x10 = 100 particles finished in 193.170 μs (1.932 μs per particle) PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 225.970 μs (2.260 μs per particle) GridNeighborhoodSearch with 20x20 = 400 particles finished in 1.599 ms (3.998 μs per particle) GridNeighborhoodSearch with FullGridCellList with 20x20 = 400 particles finished in 1.595 ms (3.988 μs per particle) PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 1.141 ms (2.853 μs per particle) GridNeighborhoodSearch with FullGridCellList with 10x10 = 100 particles finished in 279.990 μs (2.800 μs per particle) PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 229.660 μs (2.297 μs per particle) GridNeighborhoodSearch with FullGridCellList with 20x20 = 400 particles finished in 1.601 ms (4.002 μs per particle) PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 933.530 μs (2.334 μs per particle) GridNeighborhoodSearch with 10x10 = 100 particles finished in 344.780 μs (3.448 μs per particle) ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_70429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x7aa11b77ddf3) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x7aa11b76efac) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x7aa11b767ac1) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x7aa11b7676f1) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x7aa11b766a20) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x7aa11b75c9ef) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7aa136082249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== GridNeighborhoodSearch with FullGridCellList ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007aa11b7fc010 Total snapshots: 343. Utilization: 0% ╎343 @Base/client.jl:550 _start() ╎ 343 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 343 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 343 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ 343 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ 343 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 343 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 343 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 343 @Pkg/src/API.jl:157 test ╎ ╎ 343 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 343 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 343 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 343 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 343 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 343 @Pkg/…erations.jl:2387 test ╎ ╎ ╎ 343 @Pkg/…erations.jl:2481 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 343 @Pkg/…rations.jl:2215 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 343 @Pkg/…rations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 343 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 343 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 343 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 343 @Pkg/…tions.jl:2278 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 343 @Pkg/…tions.jl:2164 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 343 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 343 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 343 @Pkg/…ions.jl:2496 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 343 @Pkg/…ons.jl:2556 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 343 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 343 @Base/…ss.jl:693 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 343 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 343 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 343 @Base/…sk.jl:1228 wait() 342╎ ╎ ╎ ╎ ╎ ╎ ╎ 343 @Base/…sk.jl:1216 poptask(W::Base.Intr… with 10x10 = 100 particles finished in 391.179 μs (3.912 μs per particle) PkgEval terminated after 2725.63s: test duration exceeded the time limit