Package evaluation to test Pioneer on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T13:24:21.157


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# Set-up
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Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.12`

Set-up completed after 9.48s


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# Installation
#

Installing Pioneer...
   Resolving package versions...
   Installed libdecor_jll ───────────────────── v0.2.2+0
   Installed libfdk_aac_jll ─────────────────── v2.0.4+0
   Installed x265_jll ───────────────────────── v4.1.0+0
   Installed BioGenerics ────────────────────── v0.1.5
   Installed GR_jll ─────────────────────────── v0.73.26+0
   Installed Libmount_jll ───────────────────── v2.42.0+0
   Installed JpegTurbo_jll ──────────────────── v3.1.5+0
   Installed Arrow ──────────────────────────── v2.8.1
   Installed OffsetArrays ───────────────────── v1.17.0
   Installed HypergeometricFunctions ────────── v0.3.28
   Installed LERC_jll ───────────────────────── v4.1.0+0
   Installed SciMLPublic ────────────────────── v1.0.1
   Installed StatsFuns ──────────────────────── v2.2.0
   Installed StatisticalTraits ──────────────── v3.5.0
   Installed FastGaussQuadrature ────────────── v1.3.0
   Installed Opus_jll ───────────────────────── v1.6.1+0
   Installed Preferences ────────────────────── v1.5.2
   Installed Accessors ──────────────────────── v0.1.44
   Installed LoggingExtras ──────────────────── v1.2.0
   Installed GR ─────────────────────────────── v0.73.26
   Installed Xorg_xkbcomp_jll ───────────────── v1.4.7+0
   Installed RelocatableFolders ─────────────── v1.0.1
   Installed PDMats ─────────────────────────── v0.11.37
   Installed SparseBandedMatrices ───────────── v1.3.0
   Installed Contour ────────────────────────── v0.6.3
   Installed NetworkLayout ──────────────────── v0.4.10
   Installed EarCut_jll ─────────────────────── v2.2.4+0
   Installed ConcurrentUtilities ────────────── v2.5.1
   Installed Polyester ──────────────────────── v0.7.19
   Installed InlineStrings ──────────────────── v1.4.5
   Installed Xorg_xcb_util_wm_jll ───────────── v0.4.2+0
   Installed Grisu ──────────────────────────── v1.0.2
   Installed Measures ───────────────────────── v0.3.3
   Installed Xorg_xcb_util_image_jll ────────── v0.4.1+0
   Installed NearestNeighbors ───────────────── v0.4.27
   Installed RecipesPipeline ────────────────── v0.6.12
   Installed PlotUtils ──────────────────────── v1.4.4
   Installed StaticArrays ───────────────────── v1.9.18
   Installed EnumX ──────────────────────────── v1.0.7
   Installed ScopedValues ───────────────────── v1.6.2
   Installed RecursiveArrayTools ────────────── v3.54.0
   Installed DelimitedFiles ─────────────────── v1.9.1
   Installed OpenSSL ────────────────────────── v1.6.1
   Installed FileIO ─────────────────────────── v1.19.0
   Installed FunctionWrappers ───────────────── v1.1.3
   Installed Xorg_libSM_jll ─────────────────── v1.2.6+0
   Installed InvertedIndices ────────────────── v1.3.1
   Installed TriangularSolve ────────────────── v0.2.1
   Installed Xorg_xcb_util_jll ──────────────── v0.4.1+0
   Installed ColorSchemes ───────────────────── v3.31.0
   Installed HTTP ───────────────────────────── v1.11.0
   Installed Cairo_jll ──────────────────────── v1.18.7+0
   Installed Statistics ─────────────────────── v1.11.1
   Installed IntelOpenMP_jll ────────────────── v2025.2.0+0
   Installed libva_jll ──────────────────────── v2.23.0+0
   Installed Polynomials ────────────────────── v4.1.1
   Installed DataFrames ─────────────────────── v1.8.2
   Installed Xorg_libxkbfile_jll ────────────── v1.2.0+0
   Installed Fontconfig_jll ─────────────────── v2.17.1+0
   Installed EpollShim_jll ──────────────────── v0.0.20230411+1
   Installed Distances ──────────────────────── v0.10.12
   Installed SLEEFPirates ───────────────────── v0.6.46
   Installed Xorg_libXau_jll ────────────────── v1.0.13+0
   Installed ProgressBars ───────────────────── v1.5.1
   Installed Xorg_libXinerama_jll ───────────── v1.1.7+0
   Installed Static ─────────────────────────── v1.4.0
   Installed Missings ───────────────────────── v1.2.0
   Installed SIMDTypes ──────────────────────── v0.1.0
   Installed MuladdMacro ────────────────────── v0.2.4
   Installed JLD2 ───────────────────────────── v0.5.15
   Installed ArgParse ───────────────────────── v1.2.0
   Installed FFMPEG ─────────────────────────── v0.4.5
   Installed FiniteDiff ─────────────────────── v2.31.0
   Installed Showoff ────────────────────────── v1.0.3
   Installed IrrationalConstants ────────────── v0.2.6
   Installed EzXML ──────────────────────────── v1.2.3
   Installed JSON ───────────────────────────── v0.21.4
   Installed CpuId ──────────────────────────── v0.3.1
   Installed Pango_jll ──────────────────────── v1.57.1+0
   Installed Xorg_libpciaccess_jll ──────────── v0.19.0+0
   Installed Xorg_xcb_util_keysyms_jll ──────── v0.4.1+0
   Installed SciMLBase ──────────────────────── v2.77.2
   Installed PtrArrays ──────────────────────── v1.4.0
   Installed SpecialFunctions ───────────────── v2.8.0
   Installed Clustering ─────────────────────── v0.15.8
   Installed ADTypes ────────────────────────── v1.22.0
   Installed Bzip2_jll ──────────────────────── v1.0.9+0
   Installed LinearSolve ────────────────────── v2.39.1
   Installed xkbcommon_jll ──────────────────── v1.13.0+0
   Installed SimpleBufferStream ─────────────── v1.2.0
   Installed HarfBuzz_jll ───────────────────── v8.5.1+0
   Installed SentinelArrays ─────────────────── v1.4.10
   Installed PlotThemes ─────────────────────── v3.3.0
   Installed IfElse ─────────────────────────── v0.1.1
   Installed NaNMath ────────────────────────── v1.1.4
   Installed XZ_jll ─────────────────────────── v5.8.3+0
   Installed WorkerUtilities ────────────────── v1.6.1
   Installed ThreadingUtilities ─────────────── v0.5.6
   Installed StaticArraysCore ───────────────── v1.4.4
   Installed TranscodingStreams ─────────────── v0.11.3
   Installed NLSolversBase ──────────────────── v7.10.0
   Installed ManualMemory ───────────────────── v0.1.8
   Installed StringViews ────────────────────── v1.3.7
   Installed fzf_jll ────────────────────────── v0.61.1+0
   Installed UnicodeFun ─────────────────────── v0.4.1
   Installed Rmath_jll ──────────────────────── v0.5.1+0
   Installed FriBidi_jll ────────────────────── v1.0.17+0
   Installed MbedTLS ────────────────────────── v1.1.10
   Installed LazyArrays ─────────────────────── v2.9.10
   Installed Ratios ─────────────────────────── v0.4.5
   Installed Lz4_jll ────────────────────────── v1.10.1+0
   Installed GLFW_jll ───────────────────────── v3.4.1+1
   Installed x264_jll ───────────────────────── v10164.0.1+0
   Installed CommonSubexpressions ───────────── v0.3.1
   Installed Colors ─────────────────────────── v0.13.1
   Installed WeakRefStrings ─────────────────── v1.4.3
   Installed ExprTools ──────────────────────── v0.1.10
   Installed FreeType2_jll ──────────────────── v2.14.3+1
   Installed StatsAPI ───────────────────────── v1.8.0
   Installed DataStructures ─────────────────── v0.18.22
   Installed JLFzf ──────────────────────────── v0.1.11
   Installed CommonWorldInvalidations ───────── v1.0.0
   Installed CodecZlib ──────────────────────── v0.7.8
   Installed Compat ─────────────────────────── v4.18.1
   Installed Automa ─────────────────────────── v1.2.0
   Installed StatsBase ──────────────────────── v0.34.12
   Installed StaticArrayInterface ───────────── v1.10.0
   Installed ExceptionUnwrapping ────────────── v0.1.11
   Installed Qt6Svg_jll ─────────────────────── v6.10.2+0
   Installed Xorg_libxcb_jll ────────────────── v1.17.1+0
   Installed libaom_jll ─────────────────────── v3.13.3+0
   Installed libpng_jll ─────────────────────── v1.6.58+0
   Installed mtdev_jll ──────────────────────── v1.1.7+0
   Installed ArrayLayouts ───────────────────── v1.12.2
   Installed SciMLStructures ────────────────── v1.10.0
   Installed Scratch ────────────────────────── v1.3.0
   Installed BitTwiddlingConvenienceFunctions ─ v0.1.6
   Installed ColorTypes ─────────────────────── v0.12.1
   Installed DiffRules ──────────────────────── v1.16.0
   Installed Dbus_jll ───────────────────────── v1.16.2+0
   Installed FunctionWrappersWrappers ───────── v0.1.3
   Installed StatsPlots ─────────────────────── v0.15.8
   Installed eudev_jll ──────────────────────── v3.2.14+0
   Installed LayoutPointers ─────────────────── v0.1.17
   Installed oneTBB_jll ─────────────────────── v2022.3.0+0
   Installed CSV ────────────────────────────── v0.10.16
   Installed Plots ──────────────────────────── v1.41.6
   Installed Xorg_libXext_jll ───────────────── v1.3.8+0
   Installed TensorCore ─────────────────────── v0.1.1
   Installed TableTraits ────────────────────── v1.0.1
   Installed Zstd_jll ───────────────────────── v1.5.7+1
   Installed Xorg_xcb_util_cursor_jll ───────── v0.1.6+0
   Installed Expat_jll ──────────────────────── v2.8.1+0
   Installed PrettyTables ───────────────────── v3.3.2
   Installed PositiveFactorizations ─────────── v0.2.4
   Installed DiffResults ────────────────────── v1.1.0
   Installed Parsers ────────────────────────── v2.8.6
   Installed SciMLOperators ─────────────────── v0.3.12
   Installed HashArrayMappedTries ───────────── v0.2.0
   Installed CategoricalArrays ──────────────── v1.1.1
   Installed MKL_jll ────────────────────────── v2025.2.0+0
   Installed PooledArrays ───────────────────── v1.4.3
   Installed Format ─────────────────────────── v1.3.7
   Installed Libtiff_jll ────────────────────── v4.7.2+0
   Installed Setfield ───────────────────────── v1.1.2
   Installed LoopVectorization ──────────────── v0.12.174
   Installed TimeZones ──────────────────────── v1.22.2
   Installed ExproniconLite ─────────────────── v0.10.14
   Installed AbstractFFTs ───────────────────── v1.5.0
   Installed ConstructionBase ───────────────── v1.6.0
   Installed DataValueInterfaces ────────────── v1.0.0
   Installed ColorVectorSpace ───────────────── v0.11.0
   Installed JLLWrappers ────────────────────── v1.8.0
   Installed OrderedCollections ─────────────── v1.8.2
   Installed AbstractTrees ──────────────────── v0.4.5
   Installed libevdev_jll ───────────────────── v1.13.4+0
   Installed Libffi_jll ─────────────────────── v3.4.7+0
   Installed libinput_jll ───────────────────── v1.28.1+0
   Installed Ogg_jll ────────────────────────── v1.3.6+0
   Installed Xorg_libXrender_jll ────────────── v0.9.12+0
   Installed Indexing ───────────────────────── v1.1.1
   Installed KernelDensity ──────────────────── v0.6.12
   Installed Combinatorics ──────────────────── v1.1.0
   Installed Vulkan_Loader_jll ──────────────── v1.3.243+0
   Installed ChainRulesCore ─────────────────── v1.26.1
   Installed PolyesterWeave ─────────────────── v0.2.2
   Installed Xorg_libXi_jll ─────────────────── v1.8.3+0
   Installed Reexport ───────────────────────── v1.2.2
   Installed LineSearches ───────────────────── v7.5.1
   Installed ArrayInterface ─────────────────── v7.25.0
   Installed Qt6ShaderTools_jll ─────────────── v6.10.2+1
   Installed Interpolations ─────────────────── v0.15.1
   Installed FastLapackInterface ────────────── v2.1.1
   Installed Qt6Declarative_jll ─────────────── v6.10.2+2
   Installed LogExpFunctions ────────────────── v1.0.1
   Installed Ghostscript_jll ────────────────── v9.55.1+0
   Installed AliasTables ────────────────────── v1.1.3
   Installed CloseOpenIntervals ─────────────── v0.1.13
   Installed KLU ────────────────────────────── v0.6.0
   Installed MbedTLS_jll ────────────────────── v2.28.1010+0
   Installed OpenSpecFun_jll ────────────────── v0.5.6+0
   Installed UnPack ─────────────────────────── v1.0.2
   Installed CompositionsBase ───────────────── v0.1.2
   Installed NumericalIntegration ───────────── v0.2.0
   Installed MacroTools ─────────────────────── v0.5.16
   Installed InverseFunctions ───────────────── v0.1.17
   Installed CommonSolve ────────────────────── v0.2.7
   Installed Xorg_libXcursor_jll ────────────── v1.2.4+0
   Installed CodecLz4 ───────────────────────── v0.4.6
   Installed Libuuid_jll ────────────────────── v2.42.0+0
   Installed FASTX ──────────────────────────── v2.1.7
   Installed Krylov ─────────────────────────── v0.9.10
   Installed Widgets ────────────────────────── v0.6.7
   Installed MultivariateStats ──────────────── v0.10.4
   Installed GPUArraysCore ──────────────────── v0.2.0
   Installed DocStringExtensions ────────────── v0.9.5
   Installed Xorg_xcb_util_renderutil_jll ───── v0.3.10+0
   Installed DifferentiationInterface ───────── v0.7.18
   Installed ScientificTypesBase ────────────── v3.1.0
   Installed Crayons ────────────────────────── v4.1.1
   Installed Adapt ──────────────────────────── v4.6.1
   Installed Graphite2_jll ──────────────────── v1.3.16+0
   Installed Xorg_libICE_jll ────────────────── v1.1.2+0
   Installed libass_jll ─────────────────────── v0.17.4+0
   Installed XML2_jll ───────────────────────── v2.15.3+0
   Installed StableRNGs ─────────────────────── v1.0.4
   Installed VectorizationBase ──────────────── v0.21.74
   Installed IntegerMathUtils ───────────────── v0.1.3
   Installed Pixman_jll ─────────────────────── v0.46.4+0
   Installed VectorizedRNG ──────────────────── v0.2.26
   Installed Rmath ──────────────────────────── v0.9.0
   Installed StrideArraysCore ───────────────── v0.5.9
   Installed Arpack_jll ─────────────────────── v3.5.2+0
   Installed Wayland_jll ────────────────────── v1.24.0+0
   Installed MLJModelInterface ──────────────── v1.12.1
   Installed Mocking ────────────────────────── v0.8.1
   Installed Xorg_xtrans_jll ────────────────── v1.6.0+0
   Installed Latexify ───────────────────────── v0.16.10
   Installed RuntimeGeneratedFunctions ──────── v0.5.19
   Installed Jieko ──────────────────────────── v0.2.1
   Installed BitFlags ───────────────────────── v0.1.10
   Installed libdrm_jll ─────────────────────── v2.4.125+1
   Installed CPUSummary ─────────────────────── v0.2.7
   Installed FFMPEG_jll ─────────────────────── v8.1.0+0
   Installed GeometryBasics ─────────────────── v0.5.11
   Installed Tables ─────────────────────────── v1.12.1
   Installed Moshi ──────────────────────────── v0.3.8
   Installed Xorg_xkeyboard_config_jll ──────── v2.47.0+1
   Installed DataAPI ────────────────────────── v1.16.0
   Installed Optim ──────────────────────────── v1.13.3
   Installed FixedPointNumbers ──────────────── v0.8.6
   Installed LLVMOpenMP_jll ─────────────────── v18.1.8+0
   Installed Dictionaries ───────────────────── v0.4.6
   Installed ArrowTypes ─────────────────────── v2.3.0
   Installed Xorg_libXrandr_jll ─────────────── v1.5.6+0
   Installed TZJData ────────────────────────── v1.5.0+2025b
   Installed Primes ─────────────────────────── v0.5.7
   Installed RecipesBase ────────────────────── v1.3.4
   Installed ConcreteStructs ────────────────── v0.2.4
   Installed LAME_jll ───────────────────────── v3.100.3+0
   Installed GettextRuntime_jll ─────────────── v0.22.4+0
   Installed Libiconv_jll ───────────────────── v1.18.0+0
   Installed Xorg_libXfixes_jll ─────────────── v6.0.2+0
   Installed Qt6Wayland_jll ─────────────────── v6.10.2+1
   Installed TableOperations ────────────────── v1.2.0
   Installed IteratorInterfaceExtensions ────── v1.0.0
   Installed FFTA ───────────────────────────── v0.3.1
   Installed PrecompileTools ────────────────── v1.3.4
   Installed HostCPUFeatures ────────────────── v0.1.18
   Installed URIs ───────────────────────────── v1.6.1
   Installed LaTeXStrings ───────────────────── v1.4.0
   Installed Qt6Base_jll ────────────────────── v6.10.2+2
   Installed Arpack ─────────────────────────── v0.5.4
   Installed Glib_jll ───────────────────────── v2.86.3+0
   Installed libvorbis_jll ──────────────────── v1.3.8+0
   Installed SymbolicIndexingInterface ──────── v0.3.48
   Installed Libglvnd_jll ───────────────────── v1.7.1+1
   Installed FillArrays ─────────────────────── v1.16.0
   Installed ForwardDiff ────────────────────── v1.4.1
   Installed FilePathsBase ──────────────────── v0.9.24
   Installed BSON ───────────────────────────── v0.3.9
   Installed BitIntegers ────────────────────── v0.3.7
   Installed AxisAlgorithms ─────────────────── v1.1.0
   Installed QuadGK ─────────────────────────── v2.11.3
   Installed Observables ────────────────────── v0.5.5
   Installed CodecZstd ──────────────────────── v0.8.7
   Installed Xorg_libX11_jll ────────────────── v1.8.13+0
   Installed Xorg_libXdmcp_jll ──────────────── v1.1.6+0
   Installed Requires ───────────────────────── v1.3.1
   Installed Unzip ──────────────────────────── v0.2.0
   Installed WoodburyMatrices ───────────────── v1.1.0
   Installed LightXML ───────────────────────── v0.9.3
   Installed SortingAlgorithms ──────────────── v1.2.2
   Installed RecursiveFactorization ─────────── v0.2.26
   Installed StringManipulation ─────────────── v0.4.4
   Installed Distributions ──────────────────── v0.25.127
   Installed Sparspak ───────────────────────── v0.3.15
   Installed TextWrap ───────────────────────── v1.0.2
   Installed EvoTrees ───────────────────────── v0.17.4
   Installed Pioneer ────────────────────────── v0.2.8
  Installing 87 artifacts
   Installed artifact Xorg_xcb_util_renderutil 32.1 KiB
   Installed artifact FriBidi                  78.9 KiB
   Installed artifact Xorg_libXinerama         25.5 KiB
   Installed artifact libvorbis                271.0 KiB
   Installed artifact libfdk_aac               2.8 MiB
   Installed artifact OpenSpecFun              194.9 KiB
   Installed artifact Xorg_xkbcomp             274.8 KiB
   Installed artifact Xorg_libXrender          435.9 KiB
   Installed artifact Vulkan_Loader            177.3 KiB
   Installed artifact xkbcommon                298.7 KiB
   Installed artifact libva                    235.7 KiB
   Installed artifact Libiconv                 1.9 MiB
   Installed artifact Cairo                    2.2 MiB
   Installed artifact Arpack                   138.3 KiB
   Installed artifact Xorg_xcb_util_image      54.3 KiB
   Installed artifact JpegTurbo                1.4 MiB
   Installed artifact Xorg_libXi               1.6 MiB
   Installed artifact GettextRuntime           543.0 KiB
   Installed artifact tzjdata                  112.5 KiB
   Installed artifact Pango                    2.1 MiB
   Installed artifact Xorg_xcb_util_cursor     27.6 KiB
   Installed artifact Xorg_libXext             286.6 KiB
   Installed artifact MbedTLS                  2.2 MiB
   Installed artifact FreeType2                1.5 MiB
   Installed artifact libdrm                   368.0 KiB
   Installed artifact Xorg_xcb_util_keysyms    17.8 KiB
   Installed artifact Xorg_libxkbfile          91.1 KiB
   Installed artifact GR                       19.3 MiB
   Installed artifact Xorg_xcb_util_wm         147.9 KiB
   Installed artifact Qt6ShaderTools           2.1 MiB
   Installed artifact Xorg_xkeyboard_config    545.0 KiB
   Installed artifact libaom                   6.4 MiB
   Installed artifact Xorg_libxcb              2.1 MiB
   Installed artifact LAME                     292.5 KiB
   Installed artifact Wayland                  390.6 KiB
   Installed artifact Opus                     960.9 KiB
   Installed artifact Libffi                   44.2 KiB
   Installed artifact libdecor                 44.1 KiB
   Installed artifact libinput                 1.0 MiB
   Installed artifact testfiles                6.2 MiB
   Installed artifact fzf                      3.3 MiB
   Installed artifact Expat                    288.6 KiB
   Installed artifact libass                   427.8 KiB
   Installed artifact Libglvnd                 833.5 KiB
   Installed artifact Libtiff                  2.3 MiB
   Installed artifact XZ                       1.6 MiB
   Installed artifact Zstd                     646.0 KiB
   Installed artifact GLFW                     187.9 KiB
   Installed artifact Xorg_libXau              36.6 KiB
   Installed artifact LLVMOpenMP               661.6 KiB
   Installed artifact Pixman                   390.8 KiB
   Installed artifact Xorg_xtrans              48.2 KiB
   Installed artifact eudev                    3.9 MiB
   Installed artifact Xorg_xcb_util            39.5 KiB
   Installed artifact Xorg_libXfixes           59.0 KiB
   Installed artifact Rmath                    121.9 KiB
   Installed artifact mtdev                    79.6 KiB
   Installed artifact LERC                     267.4 KiB
   Installed artifact Qt6Svg                   386.4 KiB
   Installed artifact Qt6Wayland               1.4 MiB
   Installed artifact libevdev                 117.1 KiB
   Installed artifact EarCut                   80.5 KiB
   Installed artifact Graphite2                120.3 KiB
   Installed artifact x265                     1.4 MiB
   Installed artifact Dbus                     489.8 KiB
   Installed artifact Glib                     7.7 MiB
   Installed artifact XML2                     2.2 MiB
   Installed artifact HarfBuzz                 1.7 MiB
   Installed artifact x264                     2.1 MiB
   Installed artifact libpng                   329.4 KiB
   Installed artifact Xorg_libXdmcp            67.7 KiB
   Installed artifact FFMPEG                   11.9 MiB
   Installed artifact Lz4                      239.7 KiB
   Installed artifact Xorg_libSM               164.1 KiB
   Installed artifact Libmount                 6.9 MiB
   Installed artifact Bzip2                    503.5 KiB
   Installed artifact Ogg                      250.3 KiB
   Installed artifact Xorg_libpciaccess        26.2 KiB
   Installed artifact Xorg_libXcursor          227.1 KiB
   Installed artifact Xorg_libXrandr           97.3 KiB
   Installed artifact Fontconfig               984.8 KiB
   Installed artifact Xorg_libX11              4.8 MiB
   Installed artifact Xorg_libICE              384.9 KiB
   Installed artifact Qt6Declarative           23.8 MiB
   Installed artifact Ghostscript              31.4 MiB
   Installed artifact Libuuid                  3.9 MiB
   Installed artifact Qt6Base                  23.1 MiB
    Updating `~/.julia/environments/v1.12/Project.toml`
  [585db54e] + Pioneer v0.2.8
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [47edcb42] + ADTypes v1.22.0
  [621f4979] + AbstractFFTs v1.5.0
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.44
  [79e6a3ab] + Adapt v4.6.1
  [66dad0bd] + AliasTables v1.1.3
  [c7e460c6] + ArgParse v1.2.0
  [7d9fca2a] + Arpack v0.5.4
  [4fba245c] + ArrayInterface v7.25.0
  [4c555306] + ArrayLayouts v1.12.2
  [69666777] + Arrow v2.8.1
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⌅ [864edb3b] + DataStructures v0.18.22
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⌅ [f6006082] + EvoTrees v0.17.4
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⌅ [53c48c17] + FixedPointNumbers v0.8.6
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⌅ [77dc65aa] + FunctionWrappersWrappers v0.1.3
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⌅ [cd3eb016] + HTTP v1.11.0
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⌅ [033835bb] + JLD2 v0.5.15
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⌅ [682c06a0] + JSON v0.21.4
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⌅ [ba0b0d4f] + Krylov v0.9.10
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⌃ [d3d80556] + LineSearches v7.5.1
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⌅ [d41bc354] + NLSolversBase v7.10.0
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⌅ [354b36f9] + StringViews v1.3.7
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⌅ [b0724c58] + GettextRuntime_jll v0.22.4+0
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⌅ [e9f186c6] + Libffi_jll v3.4.7+0
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  [f638f0a6] + libfdk_aac_jll v2.0.4+0
  [36db933b] + libinput_jll v1.28.1+0
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⌅ [1270edf5] + x264_jll v10164.0.1+0
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  [9fa8497b] + Future v1.11.0
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  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
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  [b27032c2] + LibCURL v0.6.4
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  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
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  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.15.0+0
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  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
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  [efcefdf7] + PCRE2_jll v10.44.0+1
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 43.28s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   4397.5 ms  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 26 already precompiled.
  24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions.

Precompiling package dependencies...
Precompiling packages...
   4531.9 ms  ✓ FunctionWrappers
    829.5 ms  ✓ ConcreteStructs
    819.1 ms  ✓ LaTeXStrings
    757.2 ms  ✓ IteratorInterfaceExtensions
    984.2 ms  ✓ StatsAPI
   1517.6 ms  ✓ ADTypes
    929.7 ms  ✓ Contour
   6656.9 ms  ✓ ExproniconLite
   1681.3 ms  ✓ OffsetArrays
    938.2 ms  ✓ Measures
    938.1 ms  ✓ InverseFunctions
   4080.4 ms  ✓ Grisu
   3938.8 ms  ✓ Observables
    940.0 ms  ✓ TextWrap
    938.3 ms  ✓ DataValueInterfaces
   1117.0 ms  ✓ DocStringExtensions
   1157.8 ms  ✓ AbstractTrees
   1398.4 ms  ✓ URIs
    821.8 ms  ✓ SimpleBufferStream
    857.9 ms  ✓ InvertedIndices
    938.4 ms  ✓ Adapt
    916.3 ms  ✓ SciMLPublic
   1093.9 ms  ✓ ExprTools
   2528.7 ms  ✓ Format
    847.4 ms  ✓ UnPack
    860.6 ms  ✓ IntegerMathUtils
   1184.4 ms  ✓ Statistics
    769.9 ms  ✓ CommonSolve
   1782.2 ms  ✓ InlineStrings
   5273.4 ms  ✓ IrrationalConstants
   4190.7 ms  ✓ BitIntegers
    812.3 ms  ✓ PtrArrays
   3831.8 ms  ✓ NaNMath
   4653.9 ms  ✓ BSON
    890.5 ms  ✓ DataAPI
   4655.3 ms  ✓ Crayons
   3243.6 ms  ✓ FastLapackInterface
   2195.8 ms  ✓ Combinatorics
   1259.9 ms  ✓ StringViews
   1054.3 ms  ✓ AbstractFFTs
   1700.8 ms  ✓ WorkerUtilities
   1727.1 ms  ✓ ManualMemory
   5856.1 ms  ✓ OrderedCollections
   1012.1 ms  ✓ EnumX
    806.3 ms  ✓ Reexport
   1277.7 ms  ✓ TranscodingStreams
    927.3 ms  ✓ HashArrayMappedTries
    777.4 ms  ✓ IfElse
   4051.9 ms  ✓ ConstructionBase
    863.0 ms  ✓ CommonWorldInvalidations
   1028.5 ms  ✓ BitFlags
   1042.2 ms  ✓ StaticArraysCore
    784.6 ms  ✓ MuladdMacro
   1352.6 ms  ✓ PositiveFactorizations
    829.0 ms  ✓ TensorCore
   2033.6 ms  ✓ FillArrays
   7323.6 ms  ✓ MacroTools
    913.0 ms  ✓ TZJData
    956.4 ms  ✓ StableRNGs
   3875.9 ms  ✓ Unzip
    805.6 ms  ✓ SIMDTypes
    797.6 ms  ✓ CompositionsBase
    795.0 ms  ✓ Indexing
   1706.6 ms  ✓ ConcurrentUtilities
    998.8 ms  ✓ DelimitedFiles
   1857.7 ms  ✓ KLU
   1526.6 ms  ✓ WoodburyMatrices
   2024.3 ms  ✓ PDMats
   1021.2 ms  ✓ ArrowTypes
   1217.7 ms  ✓ Requires
   1217.4 ms  ✓ ProgressBars
  13422.4 ms  ✓ Krylov
   1928.8 ms  ✓ CpuId
    908.6 ms  ✓ Scratch
   2427.6 ms  ✓ SentinelArrays
   1102.5 ms  ✓ LoggingExtras
   1040.9 ms  ✓ NumericalIntegration
   1436.2 ms  ✓ ScientificTypesBase
   4034.1 ms  ✓ Compat
   1311.8 ms  ✓ Preferences
   1921.5 ms  ✓ ExceptionUnwrapping
   3437.6 ms  ✓ UnicodeFun
    788.0 ms  ✓ FunctionWrappersWrappers
    714.5 ms  ✓ TableTraits
   4953.4 ms  ✓ DifferentiationInterface
   3714.0 ms  ✓ Jieko
   3078.7 ms  ✓ Sparspak
    865.3 ms  ✓ InverseFunctions → InverseFunctionsDatesExt
   1723.9 ms  ✓ InverseFunctions → InverseFunctionsTestExt
    852.0 ms  ✓ Showoff
   1865.6 ms  ✓ ArgParse
   1272.4 ms  ✓ GPUArraysCore
   1390.2 ms  ✓ Adapt → AdaptSparseArraysExt
   3941.7 ms  ✓ ArrayInterface
    896.1 ms  ✓ OffsetArrays → OffsetArraysAdaptExt
   4075.4 ms  ✓ RuntimeGeneratedFunctions
   1182.4 ms  ✓ Primes
   4514.4 ms  ✓ Distances
   1352.5 ms  ✓ Statistics → SparseArraysExt
   6524.0 ms  ✓ FixedPointNumbers
   1324.2 ms  ✓ LogExpFunctions
   1190.5 ms  ✓ AliasTables
   1048.7 ms  ✓ PooledArrays
   3743.9 ms  ✓ Missings
   4108.4 ms  ✓ AbstractFFTs → AbstractFFTsTestExt
   5020.4 ms  ✓ ThreadingUtilities
   3755.7 ms  ✓ BioGenerics
    931.5 ms  ✓ CodecZlib
    891.4 ms  ✓ ScopedValues
    795.2 ms  ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt
    773.7 ms  ✓ ADTypes → ADTypesConstructionBaseExt
   4563.3 ms  ✓ OpenSSL
    837.3 ms  ✓ DiffResults
    899.6 ms  ✓ FillArrays → FillArraysStatisticsExt
   1529.7 ms  ✓ FillArrays → FillArraysSparseArraysExt
   1744.2 ms  ✓ CommonSubexpressions
    942.0 ms  ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt
   2203.9 ms  ✓ Dictionaries
   1441.4 ms  ✓ AxisAlgorithms
   1435.9 ms  ✓ FillArrays → FillArraysPDMatsExt
    847.7 ms  ✓ InlineStrings → ArrowTypesExt
   1011.3 ms  ✓ Ratios
   9086.3 ms  ✓ FileIO
   1369.2 ms  ✓ RelocatableFolders
   1444.2 ms  ✓ StatisticalTraits
    883.3 ms  ✓ Compat → CompatLinearAlgebraExt
   1352.5 ms  ✓ JLLWrappers
   1067.9 ms  ✓ PrecompileTools
   4773.4 ms  ✓ Tables
   1455.4 ms  ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt
  22030.7 ms  ✓ Moshi
    869.9 ms  ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt
   1318.6 ms  ✓ ArrayInterface → ArrayInterfaceSparseArraysExt
    883.7 ms  ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt
    779.5 ms  ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt
   2838.1 ms  ✓ FFTA
   1359.3 ms  ✓ Distances → DistancesSparseArraysExt
   5637.0 ms  ✓ ColorTypes
    827.1 ms  ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt
   3159.8 ms  ✓ Setfield
   7815.2 ms  ✓ Accessors
    898.9 ms  ✓ Ratios → RatiosFixedPointNumbersExt
   2956.7 ms  ✓ MLJModelInterface
   4119.0 ms  ✓ DataStructures
   5384.6 ms  ✓ ChainRulesCore
   2430.9 ms  ✓ FilePathsBase
   1384.9 ms  ✓ Mocking
   5827.5 ms  ✓ CategoricalArrays
   1439.8 ms  ✓ Xorg_libICE_jll
   1432.4 ms  ✓ Libffi_jll
   1556.6 ms  ✓ OpenSpecFun_jll
   1424.3 ms  ✓ Libuuid_jll
   1423.1 ms  ✓ LLVMOpenMP_jll
   4731.3 ms  ✓ IntelOpenMP_jll
   1403.0 ms  ✓ fzf_jll
   1443.8 ms  ✓ JpegTurbo_jll
   1434.6 ms  ✓ Ogg_jll
   1384.9 ms  ✓ mtdev_jll
   1383.6 ms  ✓ x265_jll
   1376.5 ms  ✓ x264_jll
   1430.0 ms  ✓ Libiconv_jll
   1410.9 ms  ✓ FriBidi_jll
   1643.7 ms  ✓ Graphite2_jll
   1142.7 ms  ✓ EpollShim_jll
   1465.4 ms  ✓ Lz4_jll
   1387.9 ms  ✓ Xorg_libpciaccess_jll
   1376.0 ms  ✓ Xorg_libXau_jll
   1376.2 ms  ✓ libpng_jll
   1446.4 ms  ✓ LAME_jll
   1372.2 ms  ✓ EarCut_jll
   1435.9 ms  ✓ Xorg_libXdmcp_jll
   1483.9 ms  ✓ Arpack_jll
   1400.9 ms  ✓ libaom_jll
   1456.9 ms  ✓ MbedTLS_jll
   1406.4 ms  ✓ Zstd_jll
   1442.5 ms  ✓ Expat_jll
   1407.5 ms  ✓ Opus_jll
   1253.7 ms  ✓ Xorg_xtrans_jll
   1461.9 ms  ✓ eudev_jll
   1428.4 ms  ✓ Libmount_jll
   1409.5 ms  ✓ Bzip2_jll
   1519.2 ms  ✓ Rmath_jll
   1478.5 ms  ✓ libfdk_aac_jll
   1469.4 ms  ✓ LERC_jll
   1467.8 ms  ✓ XZ_jll
   4793.8 ms  ✓ oneTBB_jll
   1378.4 ms  ✓ libevdev_jll
   3450.5 ms  ✓ StringManipulation
  20243.4 ms  ✓ Automa
  17505.3 ms  ✓ StaticArrays
   3138.2 ms  ✓ RecipesBase
   3431.5 ms  ✓ SparseBandedMatrices
  15046.3 ms  ✓ Parsers
   4567.9 ms  ✓ Static
   4417.9 ms  ✓ SciMLStructures
  55425.3 ms  ✓ JLD2
   1337.4 ms  ✓ TableOperations
   1312.4 ms  ✓ ColorTypes → StyledStringsExt
   6843.2 ms  ✓ ColorVectorSpace
   9781.7 ms  ✓ Colors
  42549.0 ms  ✓ Polynomials
   1357.6 ms  ✓ FiniteDiff
   1954.9 ms  ✓ Accessors → TestExt
   2122.0 ms  ✓ Accessors → LinearAlgebraExt
   1804.9 ms  ✓ SortingAlgorithms
   7539.5 ms  ✓ QuadGK
   4014.2 ms  ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt
    875.7 ms  ✓ ADTypes → ADTypesChainRulesCoreExt
    929.1 ms  ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt
    940.0 ms  ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt
    845.9 ms  ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt
    879.2 ms  ✓ Distances → DistancesChainRulesCoreExt
   3458.4 ms  ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt
   1422.3 ms  ✓ FilePathsBase → FilePathsBaseMmapExt
   3250.4 ms  ✓ FilePathsBase → FilePathsBaseTestExt
  11342.1 ms  ✓ TimeZones
   1079.5 ms  ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt
   1362.8 ms  ✓ Xorg_libSM_jll
   5801.9 ms  ✓ SpecialFunctions
   1370.5 ms  ✓ Pixman_jll
   1938.0 ms  ✓ JLFzf
   1516.2 ms  ✓ Ghostscript_jll
   1406.8 ms  ✓ libvorbis_jll
   1456.2 ms  ✓ GettextRuntime_jll
   1428.8 ms  ✓ XML2_jll
   2024.3 ms  ✓ CodecLz4
   1621.8 ms  ✓ libdrm_jll
   1462.2 ms  ✓ Xorg_libxcb_jll
   1337.9 ms  ✓ Arpack
   2129.5 ms  ✓ MbedTLS
   1993.3 ms  ✓ CodecZstd
   1399.3 ms  ✓ Dbus_jll
   1440.0 ms  ✓ Wayland_jll
   1392.7 ms  ✓ FreeType2_jll
   1626.5 ms  ✓ Rmath
   1464.7 ms  ✓ Libtiff_jll
  12486.8 ms  ✓ MKL_jll
   1395.7 ms  ✓ libinput_jll
  49638.8 ms  ✓ PrettyTables
  19866.6 ms  ✓ FASTX
   1560.3 ms  ✓ StaticArrays → StaticArraysStatisticsExt
   4860.3 ms  ✓ StaticArrays → StaticArraysChainRulesCoreExt
   1483.8 ms  ✓ Adapt → AdaptStaticArraysExt
   1610.5 ms  ✓ ConstructionBase → ConstructionBaseStaticArraysExt
   1555.8 ms  ✓ FillArrays → FillArraysStaticArraysExt
   1538.2 ms  ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt
   1625.1 ms  ✓ Accessors → StaticArraysExt
  27767.4 ms  ✓ GeometryBasics
   4095.2 ms  ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt
   3618.6 ms  ✓ JSON
   1070.1 ms  ✓ InlineStrings → ParsersExt
   1117.8 ms  ✓ BitTwiddlingConvenienceFunctions
   2606.1 ms  ✓ CPUSummary
   9330.3 ms  ✓ StaticArrayInterface
   7784.6 ms  ✓ JLD2 → UnPackExt
   1819.1 ms  ✓ Widgets
   8909.6 ms  ✓ ColorSchemes
   3085.4 ms  ✓ Polynomials → PolynomialsChainRulesCoreExt
   3766.3 ms  ✓ Polynomials → PolynomialsRecipesBaseExt
   1383.7 ms  ✓ FiniteDiff → FiniteDiffSparseArraysExt
   1391.1 ms  ✓ FiniteDiff → FiniteDiffStaticArraysExt
    981.6 ms  ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt
   7400.6 ms  ✓ SciMLOperators
   6335.2 ms  ✓ SymbolicIndexingInterface
   8363.1 ms  ✓ StatsBase
   5521.3 ms  ✓ TimeZones → TimeZonesRecipesBaseExt
   4659.3 ms  ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt
   2328.7 ms  ✓ HypergeometricFunctions
   4227.0 ms  ✓ FastGaussQuadrature
   1372.1 ms  ✓ DiffRules
   1307.4 ms  ✓ ColorVectorSpace → SpecialFunctionsExt
   9984.6 ms  ✓ Latexify
   1489.2 ms  ✓ Glib_jll
   1019.3 ms  ✓ LightXML
   1784.4 ms  ✓ EzXML
   1531.0 ms  ✓ Xorg_xcb_util_jll
   1442.3 ms  ✓ Xorg_libX11_jll
  33667.5 ms  ✓ HTTP
  16518.3 ms  ✓ Arrow
   1658.7 ms  ✓ Fontconfig_jll
  95643.9 ms  ✓ DataFrames
   9746.5 ms  ✓ NearestNeighbors
   7577.3 ms  ✓ Interpolations
  24546.4 ms  ✓ ArrayLayouts
   7913.4 ms  ✓ NetworkLayout
   1120.9 ms  ✓ CategoricalArrays → CategoricalArraysJSONExt
   2278.5 ms  ✓ WeakRefStrings
   1920.7 ms  ✓ HostCPUFeatures
   1842.3 ms  ✓ PolyesterWeave
   1078.6 ms  ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt
   1611.8 ms  ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt
   1147.9 ms  ✓ CloseOpenIntervals
   1302.2 ms  ✓ LayoutPointers
  19640.9 ms  ✓ PlotUtils
   1147.8 ms  ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt
   1715.5 ms  ✓ SciMLOperators → SciMLOperatorsSparseArraysExt
   3420.7 ms  ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt
  11895.2 ms  ✓ RecursiveArrayTools
   2220.7 ms  ✓ PDMats → StatsBaseExt
   2622.4 ms  ✓ CategoricalArrays → CategoricalArraysStatsBaseExt
   5202.1 ms  ✓ StatsFuns
  10062.4 ms  ✓ ForwardDiff
   2647.5 ms  ✓ Latexify → SparseArraysExt
   1504.6 ms  ✓ Xorg_xcb_util_keysyms_jll
   1456.3 ms  ✓ Xorg_xcb_util_renderutil_jll
   1462.5 ms  ✓ Xorg_xcb_util_image_jll
   1450.9 ms  ✓ Xorg_xcb_util_wm_jll
   1444.8 ms  ✓ Xorg_libXrender_jll
   1448.8 ms  ✓ Xorg_libXext_jll
   1530.6 ms  ✓ Xorg_libXfixes_jll
   1529.6 ms  ✓ Xorg_libxkbfile_jll
   6158.7 ms  ✓ FileIO → HTTPExt
   6297.2 ms  ✓ CategoricalArrays → CategoricalArraysArrowExt
   7195.3 ms  ✓ Latexify → DataFramesExt
   5119.7 ms  ✓ Clustering
   3603.3 ms  ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt
  31185.0 ms  ✓ CSV
  20290.6 ms  ✓ VectorizationBase
   2032.9 ms  ✓ StrideArraysCore
  10184.2 ms  ✓ PlotThemes
   9922.7 ms  ✓ RecipesPipeline
   1438.5 ms  ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt
   1375.8 ms  ✓ RecursiveArrayTools → RecursiveArrayToolsStatisticsExt
   2017.5 ms  ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt
   1074.8 ms  ✓ StatsFuns → StatsFunsInverseFunctionsExt
   4535.5 ms  ✓ StatsFuns → StatsFunsChainRulesCoreExt
  11395.2 ms  ✓ Distributions
   1821.5 ms  ✓ ForwardDiff → ForwardDiffStaticArraysExt
   4897.6 ms  ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt
   1618.0 ms  ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt
   1502.2 ms  ✓ Xorg_xcb_util_cursor_jll
   1512.2 ms  ✓ Xorg_libXinerama_jll
   1480.9 ms  ✓ Xorg_libXrandr_jll
   1504.1 ms  ✓ Libglvnd_jll
   1599.2 ms  ✓ Cairo_jll
   1485.5 ms  ✓ Xorg_libXcursor_jll
   1672.7 ms  ✓ Xorg_libXi_jll
   1544.1 ms  ✓ libva_jll
   1478.8 ms  ✓ Xorg_xkbcomp_jll
   7633.6 ms  ✓ LazyArrays
   6359.5 ms  ✓ SLEEFPirates
   2597.2 ms  ✓ Polyester
  31058.6 ms  ✓ SciMLBase
   3367.4 ms  ✓ Distributions → DistributionsTestExt
   6573.2 ms  ✓ Distributions → DistributionsChainRulesCoreExt
  13510.5 ms  ✓ EvoTrees
   4426.5 ms  ✓ MultivariateStats
   2150.0 ms  ✓ NLSolversBase
   1556.9 ms  ✓ HarfBuzz_jll
   1374.9 ms  ✓ Xorg_xkeyboard_config_jll
   3855.3 ms  ✓ LazyArrays → LazyArraysStaticArraysExt
   6248.4 ms  ✓ VectorizedRNG
  51938.6 ms  ✓ LoopVectorization
   3329.6 ms  ✓ SciMLBase → SciMLBaseChainRulesCoreExt
   4684.3 ms  ✓ KernelDensity
   5057.1 ms  ✓ LineSearches
   1613.6 ms  ✓ libass_jll
   1587.6 ms  ✓ Pango_jll
   1552.5 ms  ✓ xkbcommon_jll
   4180.3 ms  ✓ VectorizedRNG → VectorizedRNGStaticArraysExt
   5277.9 ms  ✓ LoopVectorization → SpecialFunctionsExt
   8379.8 ms  ✓ LoopVectorization → ForwardDiffExt
  18734.3 ms  ✓ TriangularSolve
   7381.1 ms  ✓ Optim
   1769.1 ms  ✓ FFMPEG_jll
   1511.9 ms  ✓ Vulkan_Loader_jll
   1603.5 ms  ✓ libdecor_jll
  50672.8 ms  ✓ RecursiveFactorization
   1253.4 ms  ✓ FFMPEG
   1640.3 ms  ✓ Qt6Base_jll
   1552.7 ms  ✓ GLFW_jll
  52921.9 ms  ✓ LinearSolve
   1208.4 ms  ✓ Qt6Svg_jll
   1137.4 ms  ✓ Qt6ShaderTools_jll
   1377.8 ms  ✓ GR_jll
   7069.7 ms  ✓ LinearSolve → LinearSolveRecursiveArrayToolsExt
   1246.9 ms  ✓ Qt6Declarative_jll
   1324.8 ms  ✓ Qt6Wayland_jll
   5125.8 ms  ✓ GR
  83398.8 ms  ✓ Plots
  12547.9 ms  ✓ Plots → FileIOExt
  12832.9 ms  ✓ Plots → GeometryBasicsExt
  14563.8 ms  ✓ StatsPlots
  383 dependencies successfully precompiled in 1794 seconds. 41 already precompiled.
  24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 275 dependents of these packages may trigger further precompilation to work with the unexpected versions.
  1 dependency had output during precompilation:
┌ MKL_jll
│  Downloading artifact: IntelOpenMP
│   Downloading artifact: oneTBB
└  

Precompilation completed after 1800.06s


################################################################################
# Testing
#

     Testing Pioneer
      Status `/tmp/jl_MFLoDA/Project.toml`
  [c7e460c6] ArgParse v1.2.0
  [69666777] Arrow v2.8.1
  [31f734f8] ArrowTypes v2.3.0
  [336ed68f] CSV v0.10.16
  [944b1d66] CodecZlib v0.7.8
  [861a8166] Combinatorics v1.1.0
  [a93c6f00] DataFrames v1.8.2
⌅ [864edb3b] DataStructures v0.18.22
  [85a47980] Dictionaries v0.4.6
  [31c24e10] Distributions v0.25.127
⌅ [f6006082] EvoTrees v0.17.4
  [8f5d6c58] EzXML v1.2.3
  [c2308a5c] FASTX v2.1.7
  [442a2c76] FastGaussQuadrature v1.3.0
  [28b8d3ca] GR v0.73.26
⌅ [cd3eb016] HTTP v1.11.0
  [842dd82b] InlineStrings v1.4.5
⌅ [a98d9a8b] Interpolations v0.15.1
⌅ [033835bb] JLD2 v0.5.15
⌅ [682c06a0] JSON v0.21.4
  [5ab0869b] KernelDensity v0.6.12
  [b964fa9f] LaTeXStrings v1.4.0
  [9c8b4983] LightXML v0.9.3
⌅ [7ed4a6bd] LinearSolve v2.39.1
  [e6f89c97] LoggingExtras v1.2.0
  [bdcacae8] LoopVectorization v0.12.174
  [e80e1ace] MLJModelInterface v1.12.1
  [442fdcdd] Measures v0.3.3
⌅ [e7bfaba1] NumericalIntegration v0.2.0
⌅ [429524aa] Optim v1.13.3
  [585db54e] Pioneer v0.2.8
  [91a5bcdd] Plots v1.41.6
  [f27b6e38] Polynomials v4.1.1
  [49802e3a] ProgressBars v1.5.1
  [91c51154] SentinelArrays v1.4.10
  [276daf66] SpecialFunctions v2.8.0
  [90137ffa] StaticArrays v1.9.18
  [10745b16] Statistics v1.11.1
  [2913bbd2] StatsBase v0.34.12
  [f3b207a7] StatsPlots v0.15.8
  [bd369af6] Tables v1.12.1
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_MFLoDA/Manifest.toml`
  [47edcb42] ADTypes v1.22.0
  [621f4979] AbstractFFTs v1.5.0
  [1520ce14] AbstractTrees v0.4.5
  [7d9f7c33] Accessors v0.1.44
  [79e6a3ab] Adapt v4.6.1
  [66dad0bd] AliasTables v1.1.3
  [c7e460c6] ArgParse v1.2.0
  [7d9fca2a] Arpack v0.5.4
  [4fba245c] ArrayInterface v7.25.0
  [4c555306] ArrayLayouts v1.12.2
  [69666777] Arrow v2.8.1
  [31f734f8] ArrowTypes v2.3.0
  [67c07d97] Automa v1.2.0
  [13072b0f] AxisAlgorithms v1.1.0
  [fbb218c0] BSON v0.3.9
  [47718e42] BioGenerics v0.1.5
  [d1d4a3ce] BitFlags v0.1.10
  [c3b6d118] BitIntegers v0.3.7
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [2a0fbf3d] CPUSummary v0.2.7
  [336ed68f] CSV v0.10.16
  [324d7699] CategoricalArrays v1.1.1
  [d360d2e6] ChainRulesCore v1.26.1
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [aaaa29a8] Clustering v0.15.8
  [5ba52731] CodecLz4 v0.4.6
  [944b1d66] CodecZlib v0.7.8
  [6b39b394] CodecZstd v0.8.7
  [35d6a980] ColorSchemes v3.31.0
  [3da002f7] ColorTypes v0.12.1
  [c3611d14] ColorVectorSpace v0.11.0
  [5ae59095] Colors v0.13.1
  [861a8166] Combinatorics v1.1.0
  [38540f10] CommonSolve v0.2.7
  [bbf7d656] CommonSubexpressions v0.3.1
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.18.1
  [a33af91c] CompositionsBase v0.1.2
  [2569d6c7] ConcreteStructs v0.2.4
  [f0e56b4a] ConcurrentUtilities v2.5.1
  [187b0558] ConstructionBase v1.6.0
  [d38c429a] Contour v0.6.3
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.8.2
⌅ [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [85a47980] Dictionaries v0.4.6
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.16.0
  [a0c0ee7d] DifferentiationInterface v0.7.18
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.127
  [ffbed154] DocStringExtensions v0.9.5
  [4e289a0a] EnumX v1.0.7
⌅ [f6006082] EvoTrees v0.17.4
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
dir /home/pkgeval/.julia/packages/Pioneer/9VPpT/test

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process_test_speclib: Error During Test at /home/pkgeval/.julia/packages/Pioneer/9VPpT/test/runtests.jl:121
  Test threw exception
  Expression: size((ParseSpecLib(joinpath(#= /home/pkgeval/.julia/packages/Pioneer/9VPpT/test/runtests.jl:121 =# @__DIR__(), "./../data/library_test/defaultParseEmpiricalLibParams2.json"))).libdf, 1) == 120
  SystemError: opening file "./../data/library_test/example_empirical_library.poin/precursors_table.arrow": Permission denied
  Stacktrace:
    [1] systemerror(p::String, errno::Int32; extrainfo::Nothing)
      @ Base ./error.jl:186
    [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Bool, append::Nothing)
      @ Base ./iostream.jl:317
    [3] open
      @ ./iostream.jl:296 [inlined]
    [4] open(fname::String, mode::String; lock::Bool)
      @ Base ./iostream.jl:380
    [5] open
      @ ./iostream.jl:379 [inlined]
    [6] #open#141
      @ ~/.julia/packages/Arrow/4zFuR/src/write.jl:241 [inlined]
    [7] open(::Arrow.var"#132#133"{DataFrame}, ::Type, ::Vararg{Any}; kwargs::@Kwargs{file::Bool})
      @ Base ./io.jl:410
    [8] open
      @ ./io.jl:409 [inlined]
    [9] #write#130
      @ ~/.julia/packages/Arrow/4zFuR/src/write.jl:57 [inlined]
   [10] write
      @ ~/.julia/packages/Arrow/4zFuR/src/write.jl:56 [inlined]
   [11] parseLib(speclib::BasicEmpiricalLibrary, speclib_dir::String)
      @ Main ~/.julia/packages/Pioneer/9VPpT/src/Routines/ParseSpecLib.jl:478
   [12] ParseSpecLib(params_path::String)
      @ Main ~/.julia/packages/Pioneer/9VPpT/src/Routines/ParseSpecLib.jl:356
   [13] top-level scope
      @ ~/.julia/packages/Pioneer/9VPpT/test/runtests.jl:119
   [14] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined]
   [15] macro expansion
      @ ~/.julia/packages/Pioneer/9VPpT/test/runtests.jl:121 [inlined]
   [16] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined]
   [17] macro expansion
      @ ~/.julia/packages/Pioneer/9VPpT/test/runtests.jl:121 [inlined]
   [18] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined]
dir /home/pkgeval/.julia/packages/Pioneer/9VPpT/test/UnitTests

==========================================================================================
Sarting SearchDIA
==========================================================================================

Starting search at: 2026-06-20T13:59:41.954
Output directory: ./data/ecoli_test/ecoli_test_results
[ Info: Loading Parameters...
[ Info: Loading Spectral Library...
Loading spectral library from /home/pkgeval/.julia/packages/Pioneer/9VPpT/src/Routines/../.././data/ecoli_test/Prosit_ECOLI_500_600mz_062625.poin into main memory...
[ Info: Initializing Search Context...
[ Info: Library contains 20667 targets and 20667 decoys (FDR scale factor: 1.0)
[ Info: Executing Parameter Tuning...

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[ Info: Writing QC plots...
[ Info: QC plot writing complete
[ Info: Executing NCE Tuning...

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50.0%┣█████████████████████▌                     ┫ 1/2 [00:00<Inf:Inf, InfGs/it]

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100.0%┣██████████████████████████████████████████████┫ 2/2 [00:00<00:00, 15it/s]
[ Info: Executing Quadrupole Tuning...

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50.0%┣█████████████████████▌                     ┫ 1/2 [00:05<Inf:Inf, InfGs/it]

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[ Info: Executing First Pass Search...

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50.0%┣█████████████████████▌                     ┫ 1/2 [00:45<Inf:Inf, InfGs/it]

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[ Info: Summarizing first pass search results...
[ Info: Mapping library to empirical retention times...
[ Info: Finding best precursors across runs...
[ Info: Calculating iRT errors...
[ Info: Creating RT indices...
[ Info: Search results summarization complete
[ Info: Executing Huber Tuning...

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50.0%┣█████████████████████▌                     ┫ 1/2 [00:01<Inf:Inf, InfGs/it]

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[ Info: Executing Second Pass Search...

0.0%┣                                                ┫ 0/2 [00:00<00:00, -0s/it]

50.0%┣█████████████████████▌                     ┫ 1/2 [00:46<Inf:Inf, InfGs/it]

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[ Info: Executing Scoring...

0.0%┣                                                ┫ 0/2 [00:00<00:00, -0s/it]

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[ Info: Step 1: Training EvoTrees/XGBoost models...
┌ Warning: Less than 100,000 psms. Training with simplified target-decoy discrimination model...
└ @ Main ~/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA/SearchMethods/ScoringSearch/score_psms.jl:290

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[ Info: Step 1 completed in 76.91 seconds
[ Info: Step 2: Computing precursor probabilities...

50.0%┣█████████████████████▌                     ┫ 1/2 [00:00<Inf:Inf, InfGs/it]

100.0%┣███████████████████████████████████████████████┫ 2/2 [00:05<00:00, 5s/it]
[ Info: Step 2 completed in 21.24 seconds
[ Info: Step 3: Finding best isotope traces...
[ Info: Step 3 completed in 0.76 seconds
[ Info: Step 4: Processing quantification results...
[ Info: Step 4 completed in 5.62 seconds
[ Info: Step 5: Merging PSM scores by global_prob...
[ Info: Step 5 completed in 1.2 seconds
[ Info: Step 6: Calculating global precursor q-values...
[ Info: Step 6 completed in 1.41 seconds
[ Info: Step 7: Re-sorting and merging PSMs by prec_prob...

50.0%┣█████████████████████▌                     ┫ 1/2 [00:00<Inf:Inf, InfGs/it]

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[ Info: Step 7 completed in 2.63 seconds
[ Info: Step 8: Calculating experiment-wide precursor q-values and PEPs...
[ Info: Step 8 completed in 1.35 seconds
[ Info: Step 9: Filtering PSMs by q-value thresholds...
[ Info: Step 9 completed in 1.35 seconds
[ Info: Step 10 Re-calculate Experiment-Wide Qvalue after filtering...

50.0%┣█████████████████████▌                     ┫ 1/2 [00:00<Inf:Inf, InfGs/it]

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[ Info: Step 10 completed in 1.64 seconds
[ Info: Step 11: Counting protein peptides for feature calculation...
[ Info: Step 11 completed in 0.39 seconds
[ Info: Step 12: Performing protein inference and initial scoring...

0.0%┣                                                ┫ 0/2 [00:00<00:00, -0s/it]

50.0%┣█████████████████████▌                     ┫ 1/2 [00:14<Inf:Inf, InfGs/it]

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[ Info: Step 12 completed in 25.46 seconds
[ Info: Step 13: Building protein CV fold mapping...
[ Info: Step 13 completed in 1.81 seconds (mapped 654 proteins)
[ Info: Step 14: Performing protein probit regression...
[ Info: Using in-memory probit regression
[ Info: Skipping Probit analysis: insufficient data (targets: 1238, decoys: 18)
[ Info: Step 14 completed in 5.36 seconds
[ Info: Step 15: Calculating global protein scores...
[ Info: Step 15 completed in 1.4 seconds
[ Info: Step 16: Sorting protein groups by global_pg_score...

50.0%┣█████████████████████▌                     ┫ 1/2 [00:00<Inf:Inf, InfGs/it]

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[ Info: Step 16 completed in 0.15 seconds
[ Info: Step 17: Merging protein groups for global q-value calculation...
[ Info: Step 17 completed in 0.31 seconds
[ Info: Step 18: Calculating global protein q-values...
[ Info: Step 18 completed in 1.39 seconds
[ Info: Step 19: Sorting protein groups by pg_score...

50.0%┣█████████████████████▌                     ┫ 1/2 [00:00<Inf:Inf, InfGs/it]

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[ Info: Step 19 completed in 0.0 seconds
[ Info: Step 20: Merging protein groups for experiment-wide q-value calculation...
[ Info: Step 20 completed in 1.24 seconds
[ Info: Step 21: Calculating experiment-wide protein q-values and PEPs...
[ Info: Step 21 completed in 0.0 seconds
[ Info: Step 22: Adding q-values and passing flags to protein groups...
[ Info: Step 22 completed in 1.08 seconds

50.0%┣█████████████████████▌                     ┫ 1/2 [00:00<Inf:Inf, InfGs/it]

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[ Info: Step 23: Updating PSMs with final protein scores...
[ Info: Step 23 completed in 5.06 seconds
[ Info: ScoringSearch completed - Total time: 159.49 seconds
[ Info: Breakdown: EvoTrees/XGBoost(76.9s) + Preprocess(21.2s) + Best_Traces(0.8s) + Quant_Processing(5.6s) + Merging(6.6s) + Q-values(2.9s) + Protein_Inference(0.4s) + Probit_Regression(25.5s) + Other(17.4s)
[ Info: Executing Chromatogram Integration...

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50.0%┣█████████████████████▌                     ┫ 1/2 [00:26<Inf:Inf, InfGs/it]

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[ Info: Executing MaxLFQ...

0.0%┣                                                ┫ 0/2 [00:00<00:00, -0s/it]

100.0%┣█████████████████████████████████████████████┫ 2/2 [00:00<00:00, 670it/s]

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[ Info: Performing intensity normalization...
[ Info: Merging quantification tables...
[ Info: Sorting PSM files by keys: (:inferred_protein_group, :target, :entrapment_group_id, :precursor_idx)...

50.0%┣█████████████████████▌                     ┫ 1/2 [00:00<Inf:Inf, InfGs/it]

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[ Info: Merging 2 PSM files using reference-based approach...
  1.247983 seconds (533.87 k allocations: 207.569 MiB, 14.49% gc time, 79.10% compilation time)
[ Info: Merged PSM file created at: ./data/ecoli_test/ecoli_test_results/precursors_long.arrow
[ Info: File contains 1923 rows and is sorted by: (:inferred_protein_group, :target, :entrapment_group_id, :precursor_idx)
[ Info: Validating input for MaxLFQ processing...
  0.000027 seconds (12 allocations: 1008 bytes)
[ Info: Writing precursor results...
[ Info: Performing MaxLFQ...
[ Info: Is prot sorted? true
┌ Info: MaxLFQ completed
│   output_file = "./data/ecoli_test/ecoli_test_results/protein_groups_long.arrow"
│   n_protein_groups = 0
└   n_experiments = 0
[ Info: Writing protein group results...

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1945 running 1 of 1

signal (10): User defined signal 1
_ZL31simplifyInstructionWithOperandsPN4llvm11InstructionENS_8ArrayRefIPNS_5ValueEEERKNS_13SimplifyQueryEj at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
_ZN4llvm19simplifyInstructionEPNS_11InstructionERKNS_13SimplifyQueryE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
_ZN4llvm7GVNPass18processInstructionEPNS_11InstructionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
_ZN4llvm7GVNPass12processBlockEPNS_10BasicBlockE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
_ZN4llvm7GVNPass17iterateOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
_ZN4llvm7GVNPass7runImplERNS_8FunctionERNS_15AssumptionCacheERNS_13DominatorTreeERKNS_17TargetLibraryInfoERNS_9AAResultsEPNS_23MemoryDependenceResultsERNS_8LoopInfoEPNS_25OptimizationRemarkEmitterEPNS_9MemorySSAE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
_ZN4llvm7GVNPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
run at /source/usr/include/llvm/IR/PassManagerInternal.h:89
run at /source/usr/include/llvm/IR/PassManager.h:543 [inlined]
run at /source/usr/include/llvm/IR/PassManagerInternal.h:89
_ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
run at /source/usr/include/llvm/IR/PassManagerInternal.h:89
_ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
run at /source/src/pipeline.cpp:741
operator() at /source/src/jitlayers.cpp:1459
withModuleDo<(anonymous namespace)::sizedOptimizerT<N>::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]::<lambda(llvm::Module&)> > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined]
operator() at /source/src/jitlayers.cpp:1420 [inlined]
operator() at /source/src/jitlayers.cpp:1572 [inlined]
addModule at /source/src/jitlayers.cpp:2031
jl_compile_codeinst_now at /source/src/jitlayers.cpp:626
jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824
jl_compile_method_internal at /source/src/gf.c:3528
_jl_invoke at /source/src/gf.c:4006 [inlined]
ijl_invoke at /source/src/gf.c:4021
#open#338 at ./io.jl:412
open at ./io.jl:409 [inlined]
#596 at /home/pkgeval/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA/WriteOutputs/writeCSVTables.jl:354
#open#338 at ./io.jl:412
open at ./io.jl:409 [inlined]
#writeProteinGroupsCSV#585 at /home/pkgeval/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA/WriteOutputs/writeCSVTables.jl:353
writeProteinGroupsCSV at /home/pkgeval/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA/WriteOutputs/writeCSVTables.jl:289
unknown function (ip: 0x7e0a8e21aa28) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
summarize_results! at /home/pkgeval/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA/SearchMethods/MaxLFQSearch/MaxLFQSearch.jl:229
execute_search at /home/pkgeval/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA/SearchMethods/SearchMethods.jl:56
unknown function (ip: 0x7e0a8e136237) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
macro expansion at ./timing.jl:697 [inlined]
#SearchDIA##0 at /home/pkgeval/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA.jl:267
#open#338 at ./io.jl:412
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
open at ./io.jl:409
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
SearchDIA at /home/pkgeval/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA.jl:137
unknown function (ip: 0x7e0a70da5db2) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
do_call at /source/src/interpreter.c:123
eval_value at /source/src/interpreter.c:243
eval_stmt_value at /source/src/interpreter.c:194 [inlined]
eval_body at /source/src/interpreter.c:689
eval_body at /source/src/interpreter.c:558
eval_body at /source/src/interpreter.c:558
eval_body at /source/src/interpreter.c:558
eval_body at /source/src/interpreter.c:558
eval_body at /source/src/interpreter.c:558
jl_interpret_toplevel_thunk at /source/src/interpreter.c:898
jl_toplevel_eval_flex at /source/src/toplevel.c:1035
jl_toplevel_eval_flex at /source/src/toplevel.c:975
ijl_toplevel_eval at /source/src/toplevel.c:1047
ijl_toplevel_eval_in at /source/src/toplevel.c:1092
eval at ./boot.jl:489
include_string at ./loading.jl:2873
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
_include at ./loading.jl:2933
include at ./Base.jl:307
IncludeInto at ./Base.jl:308
jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
do_call at /source/src/interpreter.c:123
eval_value at /source/src/interpreter.c:243
eval_stmt_value at /source/src/interpreter.c:194 [inlined]
eval_body at /source/src/interpreter.c:689
jl_interpret_toplevel_thunk at /source/src/interpreter.c:898
jl_toplevel_eval_flex at /source/src/toplevel.c:1035
jl_toplevel_eval_flex at /source/src/toplevel.c:975
ijl_toplevel_eval at /source/src/toplevel.c:1047
ijl_toplevel_eval_in at /source/src/toplevel.c:1092
eval at ./boot.jl:489
exec_options at ./client.jl:283
_start at ./client.jl:550
jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
true_main at /source/src/jlapi.c:971
jl_repl_entrypoint at /source/src/jlapi.c:1139
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x7e0ab99d3249) at /lib/x86_64-linux-gnu/libc.so.6
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S
unknown function (ip: (nil)) at (unknown file)
[ Info: Creating QC plots...
[ Info: Generating final QC plots

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Error: MaxLFQ analysis failed
│   exception = SystemError: opening file "./data/ecoli_test/ecoli_test_results/protein_groups_wide.arrow": No such file or directory
└ @ Main ~/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA/SearchMethods/MaxLFQSearch/MaxLFQSearch.jl:262

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
poptask at ./task.jl:1216
wait at ./task.jl:1228
#wait#406 at ./condition.jl:141
wait at ./condition.jl:136 [inlined]
wait at ./process.jl:693
wait at ./process.jl:686
jfptr_wait_70429.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556
unknown function (ip: 0x72779d3980e3) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
#205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496
withenv at ./env.jl:265
#190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311
with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164
#186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278
#mktempdir#21 at ./file.jl:936
unknown function (ip: 0x72779d38f1fc) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
mktempdir at ./file.jl:932
mktempdir at ./file.jl:932
#sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined]
sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215
unknown function (ip: 0x72779d383709) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
#test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481
test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined]
#test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552
test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529
unknown function (ip: 0x72779d382c61) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
#test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169
unknown function (ip: 0x72779d37d770) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158
#test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157
test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined]
#test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined]
test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156
unknown function (ip: 0x72779d37863f) at (unknown file)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
do_call at /source/src/interpreter.c:123
eval_value at /source/src/interpreter.c:243
eval_stmt_value at /source/src/interpreter.c:194 [inlined]
eval_body at /source/src/interpreter.c:689
eval_body at /source/src/interpreter.c:558
eval_body at /source/src/interpreter.c:558
jl_interpret_toplevel_thunk at /source/src/interpreter.c:898
jl_toplevel_eval_flex at /source/src/toplevel.c:1035
jl_toplevel_eval_flex at /source/src/toplevel.c:975
ijl_toplevel_eval at /source/src/toplevel.c:1047
ijl_toplevel_eval_in at /source/src/toplevel.c:1092
eval at ./boot.jl:489
include_string at ./loading.jl:2873
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
_include at ./loading.jl:2933
include at ./Base.jl:306
exec_options at ./client.jl:317
_start at ./client.jl:550
jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
true_main at /source/src/jlapi.c:971
jl_repl_entrypoint at /source/src/jlapi.c:1139
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x7277b7c80249) at /lib/x86_64-linux-gnu/libc.so.6
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x000072779d3fc010 Total snapshots: 536. Utilization: 0%
   ╎536 @Base/client.jl:550  _start()
   ╎ 536 @Base/client.jl:317  exec_options(opts::Base.JLOptions)
   ╎  536 @Base/Base.jl:306  include(mod::Module, _path::String)
   ╎   536 @Base/loading.jl:2933  _include(mapexpr::Function, mod::Module, _pat…
   ╎    536 @Base/loading.jl:2873  include_string(mapexpr::typeof(identity), mo…
   ╎     536 @Base/boot.jl:489  eval(m::Module, e::Any)
   ╎    ╎ 536 @Pkg/src/API.jl:156  kwcall(::@NamedTuple{julia_args::Cmd}, ::typ…
   ╎    ╎  536 @Pkg/src/API.jl:156  #test#81
   ╎    ╎   536 @Pkg/src/API.jl:157  test
   ╎    ╎    536 @Pkg/src/API.jl:157  test(pkgs::Vector{String}; kwargs::Base.P…
   ╎    ╎     536 @Pkg/src/API.jl:158  kwcall(::@NamedTuple{julia_args::Cmd}, :…
   ╎    ╎    ╎ 536 @Pkg/src/API.jl:169  test(pkgs::Vector{PackageSpec}; io::IOC…
   ╎    ╎    ╎  536 @Pkg/src/API.jl:529  kwcall(::@NamedTuple{julia_args::Cmd, …
   ╎    ╎    ╎   536 @Pkg/src/API.jl:552  test(ctx::Pkg.Types.Context, pkgs::Ve…
   ╎    ╎    ╎    536 @Pkg/…erations.jl:2387  test
   ╎    ╎    ╎     536 @Pkg/…erations.jl:2481  test(ctx::Pkg.Types.Context, pkg…
   ╎    ╎    ╎    ╎ 536 @Pkg/…rations.jl:2215  kwcall(::@NamedTuple{preferences…
   ╎    ╎    ╎    ╎  536 @Pkg/…rations.jl:2225  #sandbox#182
   ╎    ╎    ╎    ╎   536 @Base/file.jl:932  mktempdir(fn::Function)
   ╎    ╎    ╎    ╎    536 @Base/file.jl:932  mktempdir(fn::Function, parent::S…
   ╎    ╎    ╎    ╎     536 @Base/file.jl:936  mktempdir(fn::Pkg.Operations.var…
   ╎    ╎    ╎    ╎    ╎ 536 @Pkg/…tions.jl:2278  (::Pkg.Operations.var"#186#18…
   ╎    ╎    ╎    ╎    ╎  536 @Pkg/…tions.jl:2164  with_temp_env(fn::Pkg.Operat…
   ╎    ╎    ╎    ╎    ╎   536 @Pkg/…tions.jl:2311  (::Pkg.Operations.var"#190#…
   ╎    ╎    ╎    ╎    ╎    536 @Base/env.jl:265  withenv(::Pkg.Operations.var"…
   ╎    ╎    ╎    ╎    ╎     536 @Pkg/…ions.jl:2496  (::Pkg.Operations.var"#205…
   ╎    ╎    ╎    ╎    ╎    ╎ 536 @Pkg/…ons.jl:2556  subprocess_handler(cmd::Cm…
   ╎    ╎    ╎    ╎    ╎    ╎  536 @Base/…ss.jl:686  wait(x::Base.Process)
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   ╎    ╎    ╎    ╎    ╎    ╎    536 @Base/…on.jl:136  wait
   ╎    ╎    ╎    ╎    ╎    ╎     536 @Base/…on.jl:141  wait(c::Base.GenericCon…
   ╎    ╎    ╎    ╎    ╎    ╎    ╎ 536 @Base/…sk.jl:1228  wait()
535╎    ╎    ╎    ╎    ╎    ╎    ╎  536 @Base/…sk.jl:1216  poptask(W::Base.Intr…

process_test┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361
: Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x00007e0a9f1fc010 Total snapshots: 91. Utilization: 100%
  ╎91 @Base/client.jl:550  _start()
  ╎ 91 @Base/client.jl:283  exec_options(opts::Base.JLOptions)
  ╎  91 @Base/boot.jl:489  eval(m::Module, e::Any)
  ╎   91 @Base/Base.jl:308  (::Base.IncludeInto)(fname::String)
  ╎    91 @Base/Base.jl:307  include(mapexpr::Function, mod::Module, _path::Str…
  ╎     91 @Base/loading.jl:2933  _include(mapexpr::Function, mod::Module, _pat…
  ╎    ╎ 91 @Base/loading.jl:2873  include_string(mapexpr::typeof(identity), mo…
  ╎    ╎  91 @Base/boot.jl:489  eval(m::Module, e::Any)
  ╎    ╎   91 …utines/SearchDIA.jl:137  SearchDIA(params_path::String)
  ╎    ╎    91 @Base/io.jl:409  open(::Function, ::String, ::String)
  ╎    ╎     91 @Base/io.jl:412  open(::var"#SearchDIA##0#SearchDIA##1", ::Stri…
  ╎    ╎    ╎ 91 …tines/SearchDIA.jl:267  (::var"#SearchDIA##0#SearchDIA##1")(l…
  ╎    ╎    ╎  91 @Base/timing.jl:697  macro expansion
  ╎    ╎    ╎   91 …/SearchMethods.jl:56  execute_search(search_type::MaxLFQSea…
  ╎    ╎    ╎    73 …/MaxLFQSearch.jl:229  summarize_results!(results::MaxLFQSe…
  ╎    ╎    ╎     73 …riteCSVTables.jl:289  kwcall(::@NamedTuple{write_csv::Boo…
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10╎    ╎    ╎    18 …/MaxLFQSearch.jl:244  summarize_results!(results::MaxLFQSe…
  ╎    ╎    ╎     7  @Compiler/…nfer.jl:1448  typeinf_ext_toplevel(mi::Core.Met…
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  ╎    ╎    ╎    ╎    ╎    ╎    ╎    ╎ +85 1  @Compiler/…l:494  compute_live_ins
  ╎    ╎    ╎    ╎    ╎    ╎    ╎    ╎ +86 1  @Compiler/…l:520  compute_live_in…
  ╎    ╎    ╎    ╎    ╎    ╎    ╎    ╎ +87 1  @Base/…ay.jl:405  getindex
 1╎    ╎    ╎    ╎    ╎    ╎    ╎    ╎ +88 1  @Base/…ot.jl:648  Array
  ╎    ╎    ╎    ╎    ╎    ╎    ╎    ╎ +30 1  @Compiler/…l:4588  typeinf(interp…
  ╎    ╎    ╎    ╎    ╎    ╎    ╎    ╎ +31 1  @Compiler/…l:205  finish_nocycle(…
  ╎    ╎    ╎    ╎    ╎    ╎    ╎    ╎ +32 1  @Compiler/…l:98  finish!(interp::…
  ╎    ╎    ╎    ╎    ╎    ╎    ╎    ╎ +33 1  @Compiler/…l:230  ir_to_codeinf!
  ╎    ╎    ╎    ╎    ╎    ╎    ╎    ╎ +34 1  @Compiler/…l:239  ir_to_codeinf!
 1╎    ╎    ╎    ╎    ╎    ╎    ╎    ╎ +35 1  @Compiler/…l:247  widen_all_const…
  ╎    ╎    ╎    ╎   1  @Compiler/…on.jl:4588  typeinf(interp::Compiler.NativeI…
  ╎    ╎    ╎    ╎    1  @Compiler/…er.jl:202  finish_nocycle(::Compiler.Native…
  ╎    ╎    ╎    ╎     1  @Compiler/…ze.jl:1002  optimize(interp::Compiler.Nati…
  ╎    ╎    ╎    ╎    ╎ 1  @Compiler/…e.jl:1027  run_passes_ipo_safe
  ╎    ╎    ╎    ╎    ╎  1  @Compiler/…e.jl:1013  run_passes_ipo_safe(ci::Core.…
  ╎    ╎    ╎    ╎    ╎   1  @Compiler/…g.jl:76  ssa_inlining_pass!
  ╎    ╎    ╎    ╎    ╎    1  @Compiler/….jl:1618  assemble_inline_todo!(ir::Co…
  ╎    ╎    ╎    ╎    ╎     1  @Compiler/….jl:1250  process_simple!(todo::Vecto…
  ╎    ╎    ╎    ╎    ╎    ╎ 1  @Compiler/…jl:1069  call_sig(ir::Compiler.IRCod…
 1╎    ╎    ╎    ╎    ╎    ╎  1  @Base/boot.jl:648  Array
  ╎    ╎    ╎    ╎ 1  @Compiler/…fer.jl:1440  typeinf_ext_toplevel
 1╎    ╎    ╎    ╎  1  @Compiler/…fer.jl:1433  add_codeinsts_to_jit!(interp::Co…
  ╎    ╎    ╎     1  …QSearch/utils.jl:36  create_qc_plots(precursors_path::Str…
  ╎    ╎    ╎    ╎ 1  @Compiler/…fer.jl:1448  typeinf_ext_toplevel(mi::Core.Met…
  ╎    ╎    ╎    ╎  1  @Compiler/…fer.jl:1439  typeinf_ext_toplevel
  ╎    ╎    ╎    ╎   1  @Compiler/…er.jl:1256  typeinf_ext(interp::Compiler.Nat…
  ╎    ╎    ╎    ╎    1  @Compiler/…on.jl:4581  typeinf(interp::Compiler.Native…
  ╎    ╎    ╎    ╎     1  @Compiler/…on.jl:4239  typeinf_local(interp::Compiler…
  ╎    ╎    ╎    ╎    ╎ 1  @Base/array.jl:355  copy
 1╎    ╎    ╎    ╎    ╎  1  @Base/…emory.jl:129  unsafe_copyto!

Error During Test at /home/pkgeval/.julia/packages/Pioneer/9VPpT/test/runtests.jl:125
  Test threw exception
  Expression: SearchDIA("./../data/ecoli_test/ecoli_test_params.json") === nothing
  SystemError: opening file "./data/ecoli_test/ecoli_test_results/protein_groups_wide.arrow": No such file or directory
  Stacktrace:
    [1] systemerror(p::String, errno::Int32; extrainfo::Nothing)
      @ Base ./error.jl:186
    [2] open(fname::String; lock::Bool, read::Bool, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing)
      @ Base ./iostream.jl:317
    [3] open
      @ ./iostream.jl:296 [inlined]
    [4] open(fname::String, mode::String; lock::Bool)
      @ Base ./iostream.jl:380
    [5] open(fname::String, mode::String)
      @ Base ./iostream.jl:379
    [6] open(::typeof(Arrow.tobytes), ::String, ::Vararg{String}; kwargs::@Kwargs{})
      @ Base ./io.jl:410
    [7] open
      @ ./io.jl:409 [inlined]
    [8] tobytes
      @ ~/.julia/packages/Arrow/4zFuR/src/table.jl:29 [inlined]
    [9] Arrow.Table(input::String, pos::Int64, len::Nothing; kw::@Kwargs{})
      @ Arrow ~/.julia/packages/Arrow/4zFuR/src/table.jl:460
   [10] Table
      @ ~/.julia/packages/Arrow/4zFuR/src/table.jl:460 [inlined]
   [11] qcPlots(precursors_wide_path::String, precursors_long_path::String, protein_groups_wide_path::String, params_::PioneerParameters, precursors::StandardLibraryPrecursors, parsed_fnames::Tuple{String, String}, qc_plot_folder::String, MS_TABLE_PATHS::Vector{String}, irt_rt::Dict{Int64, RtConversionModel}, frag_err_dist_dict::Dict{Int64, MassErrorModel})
      @ Main ~/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA/WriteOutputs/qcPlots.jl:62
   [12] create_qc_plots(precursors_path::String, precursors_long_path::String, proteins_path::String, search_context::SearchContext{1, FragmentIndexLibrary, ArrowTableReference{2}}, precursors::StandardLibraryPrecursors, params::MaxLFQSearchParameters)
      @ Main ~/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA/SearchMethods/MaxLFQSearch/utils.jl:36
   [13] summarize_results!(results::MaxLFQSearchResults, params::MaxLFQSearchParameters, search_context::SearchContext{1, FragmentIndexLibrary, ArrowTableReference{2}})
      @ Main ~/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA/SearchMethods/MaxLFQSearch/MaxLFQSearch.jl:244
   [14] execute_search(search_type::MaxLFQSearch, search_context::SearchContext{1, FragmentIndexLibrary, ArrowTableReference{2}}, params::PioneerParameters)
      @ Main ~/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA/SearchMethods/SearchMethods.jl:56
   [15] macro expansion
      @ ./timing.jl:697 [inlined]
   [16] (::var"#SearchDIA##0#SearchDIA##1")(log_file::IOStream)
      @ Main ~/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA.jl:267
   [17] open(::var"#SearchDIA##0#SearchDIA##1", ::String, ::Vararg{String}; kwargs::@Kwargs{})
      @ Base ./io.jl:412
   [18] open(::Function, ::String, ::String)
      @ Base ./io.jl:409
   [19] SearchDIA(params_path::String)
      @ Main ~/.julia/packages/Pioneer/9VPpT/src/Routines/SearchDIA.jl:137
   [20] top-level scope
      @ ~/.julia/packages/Pioneer/9VPpT/test/runtests.jl:119
   [21] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined]
   [22] macro expansion
      @ ~/.julia/packages/Pioneer/9VPpT/test/runtests.jl:125 [inlined]
   [23] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined]
   [24] macro expansion
      @ ~/.julia/packages/Pioneer/9VPpT/test/runtests.jl:125 [inlined]
   [25] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined]

[1] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
poptask at ./task.jl:1216
wait at ./task.jl:1228
#wait#406 at ./condition.jl:141
wait at ./condition.jl:136 [inlined]
_trywait at ./asyncevent.jl:185
profile_printing_listener at ./Base.jl:332
#start_profile_listener##0 at ./Base.jl:352
jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
start_task at /source/src/task.c:1253
unknown function (ip: (nil)) at (unknown file)
Allocations: 34677968 (Pool: 34676527; Big: 1441); GC: 47

[1945] signal 15: Terminated
in expression starting at /home/pkgeval/.julia/packages/Pioneer/9VPpT/test/UnitTests/isotopeSplines.jl:217
_ZN4llvm14MemoryUseOrDef12setOptimizedEPNS_12MemoryAccessE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
_ZN4llvm9MemorySSA14buildMemorySSAERNS_14BatchAAResultsE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
_ZN4llvm9MemorySSAC1ERNS_8FunctionEPNS_9AAResultsEPNS_13DominatorTreeE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
_ZN4llvm17MemorySSAAnalysis3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
_ZN4llvm6detail17AnalysisPassModelINS_8FunctionENS_17MemorySSAAnalysisENS_17PreservedAnalysesENS_15AnalysisManagerIS2_JEE11InvalidatorEJEE3runERS2_RS6_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
_ZN4llvm15AnalysisManagerINS_8FunctionEJEE13getResultImplEPNS_11AnalysisKeyERS1_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
_ZN4llvm7DSEPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
run at /source/usr/include/llvm/IR/PassManagerInternal.h:89
run at /source/usr/include/llvm/IR/PassManager.h:543 [inlined]
run at /source/usr/include/llvm/IR/PassManagerInternal.h:89
_ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
run at /source/usr/include/llvm/IR/PassManagerInternal.h:89
_ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
run at /source/src/pipeline.cpp:741
operator() at /source/src/jitlayers.cpp:1459
withModuleDo<(anonymous namespace)::sizedOptimizerT<N>::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]::<lambda(llvm::Module&)> > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined]
operator() at /source/src/jitlayers.cpp:1420 [inlined]
operator() at /source/src/jitlayers.cpp:1572 [inlined]
addModule at /source/src/jitlayers.cpp:2031
jl_compile_codeinst_now at /source/src/jitlayers.cpp:626
jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824
jl_compile_method_internal at /source/src/gf.c:3528
_jl_invoke at /source/src/gf.c:4006 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
do_call at /source/src/interpreter.c:123
eval_value at /source/src/interpreter.c:243
eval_stmt_value at /source/src/interpreter.c:194 [inlined]
eval_body at /source/src/interpreter.c:689
eval_body at /source/src/interpreter.c:558
eval_body at /source/src/interpreter.c:558
jl_interpret_toplevel_thunk at /source/src/interpreter.c:898
jl_toplevel_eval_flex at /source/src/toplevel.c:1035
jl_toplevel_eval_flex at /source/src/toplevel.c:975
ijl_toplevel_eval at /source/src/toplevel.c:1047
ijl_toplevel_eval_in at /source/src/toplevel.c:1092
eval at ./boot.jl:489
include_string at ./loading.jl:2873
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
_include at ./loading.jl:2933
include at ./Base.jl:307
IncludeInto at ./Base.jl:308
jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
do_call at /source/src/interpreter.c:123
eval_value at /source/src/interpreter.c:243
eval_stmt_value at /source/src/interpreter.c:194 [inlined]
eval_body at /source/src/interpreter.c:689
eval_body at /source/src/interpreter.c:558
eval_body at /source/src/interpreter.c:558
jl_interpret_toplevel_thunk at /source/src/interpreter.c:898
jl_toplevel_eval_flex at /source/src/toplevel.c:1035
jl_toplevel_eval_flex at /source/src/toplevel.c:975
ijl_toplevel_eval at /source/src/toplevel.c:1047
ijl_toplevel_eval_in at /source/src/toplevel.c:1092
eval at ./boot.jl:489
include_string at ./loading.jl:2873
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
_include at ./loading.jl:2933
include at ./Base.jl:307
IncludeInto at ./Base.jl:308
jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
do_call at /source/src/interpreter.c:123
eval_value at /source/src/interpreter.c:243
eval_stmt_value at /source/src/interpreter.c:194 [inlined]
eval_body at /source/src/interpreter.c:689
jl_interpret_toplevel_thunk at /source/src/interpreter.c:898
jl_toplevel_eval_flex at /source/src/toplevel.c:1035
jl_toplevel_eval_flex at /source/src/toplevel.c:975
ijl_toplevel_eval at /source/src/toplevel.c:1047
ijl_toplevel_eval_in at /source/src/toplevel.c:1092
eval at ./boot.jl:489
exec_options at ./client.jl:283
_start at ./client.jl:550
jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
true_main at /source/src/jlapi.c:971
jl_repl_entrypoint at /source/src/jlapi.c:1139
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x7e0ab99d3249) at /lib/x86_64-linux-gnu/libc.so.6
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S
unknown function (ip: (nil)) at (unknown file)
Allocations: 634269679 (Pool: 634264184; Big: 5495); GC: 171

PkgEval terminated after 2723.14s: test duration exceeded the time limit