Package evaluation to test PersistenceDiagramsBase on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T11:40:52.498 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.37s ################################################################################ # Installation # Installing PersistenceDiagramsBase... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [b1ad91c1] + PersistenceDiagramsBase v0.1.1 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [34da2185] + Compat v3.47.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [b1ad91c1] + PersistenceDiagramsBase v0.1.1 [10745b16] + Statistics v1.11.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.29s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 8400.3 ms ✓ PrettyTables 6590.0 ms ✓ PersistenceDiagramsBase 66995.9 ms ✓ DataFrames 3 dependencies successfully precompiled in 83 seconds. 81 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 28 dependents of these packages may trigger further precompilation to work with the unexpected versions. 1 dependency had output during precompilation: ┌ DataFrames │ WARNING: method definition for #DataFrame#200 at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/dataframe/dataframe.jl:397 declares type variable T but does not use it. │ WARNING: method definition for col_ordering at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/abstractdataframe/sort.jl:145 declares type variable O but does not use it. └ Precompilation completed after 101.36s ################################################################################ # Testing # Testing PersistenceDiagramsBase Status `/tmp/jl_mBW8dY/Project.toml` [4c88cf16] Aqua v0.8.16 ⌅ [34da2185] Compat v3.47.0 ⌃ [a93c6f00] DataFrames v1.3.6 [e30172f5] Documenter v1.17.0 [b1ad91c1] PersistenceDiagramsBase v0.1.1 [1bc83da4] SafeTestsets v0.1.0 [bd369af6] Tables v1.12.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_mBW8dY/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [4c88cf16] Aqua v0.8.16 [944b1d66] CodecZlib v0.7.8 ⌅ [34da2185] Compat v3.47.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌃ [a93c6f00] DataFrames v1.3.6 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [59287772] Formatting v0.4.3 [d7ba0133] Git v1.5.0 [b5f81e59] IOCapture v1.0.0 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [0e77f7df] LazilyInitializedFields v1.3.0 [d0879d2d] MarkdownAST v0.1.3 [e1d29d7a] Missings v1.2.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [69de0a69] Parsers v2.8.6 [b1ad91c1] PersistenceDiagramsBase v0.1.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 ⌅ [08abe8d2] PrettyTables v1.3.1 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [1bc83da4] SafeTestsets v0.1.0 [a2af1166] SortingAlgorithms v1.2.2 [10745b16] Statistics v1.11.1 [ec057cc2] StructUtils v2.8.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [2e619515] Expat_jll v2.8.1+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.54.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.3.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... Info Given DataFrames was explicitly requested, output will be shown live  WARNING: method definition for #DataFrame#200 at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/dataframe/dataframe.jl:397 declares type variable T but does not use it. WARNING: method definition for col_ordering at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/abstractdataframe/sort.jl:145 declares type variable O but does not use it. 64406.0 ms ✓ DataFrames 1 dependency successfully precompiled in 65 seconds. 56 already precompiled. 45 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Compat, DataAPI, DataValueInterfaces, Dates, DelimitedFiles, Distributed, Downloads, InteractiveUtils, IteratorInterfaceExtensions, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, Mmap, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, OrderedCollections, Pkg, Pkg → REPLExt, Printf, REPL, Serialization, SharedArrays, SparseArrays, Statistics, Statistics → SparseArraysExt, StyledStrings, SuiteSparse_jll, TOML, TableTraits, Tables, Tar, Test, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 7 dependents of these packages may trigger further precompilation to work with the unexpected versions. 1 dependency had output during precompilation: ┌ DataFrames │ [Output was shown above] └ ┌ Warning: ErrorException should no longer be used to test field access; FieldError should be used instead! │ caller = top-level scope at diagrams.jl:188 └ @ Core ~/.julia/packages/PersistenceDiagramsBase/QiTwq/test/diagrams.jl:188 ┌ Warning: ErrorException should no longer be used to test field access; FieldError should be used instead! │ caller = top-level scope at diagrams.jl:188 └ @ Core ~/.julia/packages/PersistenceDiagramsBase/QiTwq/test/diagrams.jl:188 Test Summary: | Pass Total Time diagrams | 104 104 1m30.8s Base.PkgId(Base.UUID("b1ad91c1-539c-4ace-90bd-ea06abc420fa"), "PersistenceDiagramsBase") does not declare a compat entry for the following extras: 5-element Vector{Base.PkgId}: Aqua [4c88cf16-eb10-579e-8560-4a9242c79595] DataFrames [a93c6f00-e57d-5684-b7b6-d8193f3e46c0] Documenter [e30172f5-a6a5-5a46-863b-614d45cd2de4] SafeTestsets [1bc83da4-3b8d-516f-aca4-4fe02f6d838f] Test [8dfed614-e22c-5e08-85e1-65c5234f0b40] Base.PkgId(Base.UUID("b1ad91c1-539c-4ace-90bd-ea06abc420fa"), "PersistenceDiagramsBase") extras: Test Failed at /home/pkgeval/.julia/packages/Aqua/h1qD0/src/deps_compat.jl:60 Expression: isempty(result) Evaluated: isempty(Base.PkgId[Base.PkgId(Base.UUID("4c88cf16-eb10-579e-8560-4a9242c79595"), "Aqua"), Base.PkgId(Base.UUID("a93c6f00-e57d-5684-b7b6-d8193f3e46c0"), "DataFrames"), Base.PkgId(Base.UUID("e30172f5-a6a5-5a46-863b-614d45cd2de4"), "Documenter"), Base.PkgId(Base.UUID("1bc83da4-3b8d-516f-aca4-4fe02f6d838f"), "SafeTestsets"), Base.PkgId(Base.UUID("8dfed614-e22c-5e08-85e1-65c5234f0b40"), "Test")]) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] test_deps_compat(pkg::Base.PkgId, deps_type::String; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/h1qD0/src/deps_compat.jl:60 [3] test_deps_compat @ ~/.julia/packages/Aqua/h1qD0/src/deps_compat.jl:55 [inlined] [4] macro expansion @ ~/.julia/packages/Aqua/h1qD0/src/deps_compat.jl:45 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [6] test_deps_compat(pkg::Base.PkgId; check_julia::Bool, check_extras::Bool, check_weakdeps::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/h1qD0/src/deps_compat.jl:45 Test Summary: | Pass Fail Total Time aqua | 10 1 11 1m12.3s Method ambiguity | 1 1 9.5s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.0s Stale dependencies | 1 1 9.3s Compat bounds | 3 1 4 11.9s julia | 1 1 0.1s Base.PkgId(Base.UUID("b1ad91c1-539c-4ace-90bd-ea06abc420fa"), "PersistenceDiagramsBase") deps | 1 1 0.6s Base.PkgId(Base.UUID("b1ad91c1-539c-4ace-90bd-ea06abc420fa"), "PersistenceDiagramsBase") extras | 1 1 11.2s Base.PkgId(Base.UUID("b1ad91c1-539c-4ace-90bd-ea06abc420fa"), "PersistenceDiagramsBase") weakdeps | 1 1 0.0s Piracy | 1 1 0.3s Persistent tasks | 1 1 22.3s RNG of the outermost testset: Random.Xoshiro(0x5ec99092cd742a0e, 0x69b01b76bd666b6c, 0x108eaaa84ab6fea4, 0xc15eeee5ce947495, 0x383bc08921499599) ERROR: LoadError: Some tests did not pass: 10 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PersistenceDiagramsBase/QiTwq/test/runtests.jl:6 Testing failed after 175.48s ERROR: LoadError: Package PersistenceDiagramsBase errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 302.89s: package has test failures