Package evaluation to test OpenSMILES on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T13:09:41.680 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.44s ################################################################################ # Installation # Installing OpenSMILES... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [29c4880b] + OpenSMILES v0.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [ec485272] + ArnoldiMethod v0.1.0 [34da2185] + Compat v4.18.1 ⌅ [864edb3b] + DataStructures v0.18.22 ⌃ [86223c79] + Graphs v1.9.0 [d25df0c9] + Inflate v0.1.5 [093fc24a] + LightGraphs v1.3.5 [1914dd2f] + MacroTools v0.5.16 [29c4880b] + OpenSMILES v0.1.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [699a6c99] + SimpleTraits v0.9.6 [47aef6b3] + SimpleWeightedGraphs v1.5.1 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 1.44s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 14214.1 ms ✓ Graphs 7008.3 ms ✓ SimpleWeightedGraphs 13968.7 ms ✓ OpenSMILES 3 dependencies successfully precompiled in 36 seconds. 35 already precompiled. 9 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings, TOML and UUIDs). Restart julia to access the new versions. Otherwise, 15 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 49.02s ################################################################################ # Testing # Testing OpenSMILES Status `/tmp/jl_0vH1r2/Project.toml` [093fc24a] LightGraphs v1.3.5 [29c4880b] OpenSMILES v0.1.0 [47aef6b3] SimpleWeightedGraphs v1.5.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_0vH1r2/Manifest.toml` ⌅ [ec485272] ArnoldiMethod v0.1.0 [34da2185] Compat v4.18.1 ⌅ [864edb3b] DataStructures v0.18.22 ⌃ [86223c79] Graphs v1.9.0 [d25df0c9] Inflate v0.1.5 [093fc24a] LightGraphs v1.3.5 [1914dd2f] MacroTools v0.5.16 [29c4880b] OpenSMILES v0.1.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [699a6c99] SimpleTraits v0.9.6 [47aef6b3] SimpleWeightedGraphs v1.5.1 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Read Next Element | 6 6 1.7s Test Summary: | Pass Total Time Read Next Numeric | 3 3 1.0s Test Summary: | Pass Total Time Read Next Charge | 6 6 1.5s Test Summary: | Pass Total Time Brackets Known | 4 4 1.6s Test Summary: | Pass Total Time Brackets Equivalences | 4 4 0.1s ParseOpenSMILES Checking Implicit Hydrogens on Simple Molecules: Error During Test at /home/pkgeval/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:42 Got exception outside of a @test MethodError: no method matching add_vertex!(::SimpleWeightedGraphs.SimpleWeightedGraph{Int64, Float64}) The function `add_vertex!` exists, but no method is defined for this combination of argument types. Closest candidates are: add_vertex!(!Matched::LightGraphs.SimpleGraphs.SimpleDiGraph{T}) where T @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/SimpleGraphs/simpledigraph.jl:449 add_vertex!(!Matched::LightGraphs.SimpleGraphs.SimpleGraph{T}) where T @ LightGraphs ~/.julia/packages/LightGraphs/IgJif/src/SimpleGraphs/simplegraph.jl:526 Stacktrace: [1] ParseSMILES(S::String, calculate_implicit_hydrogens::Bool) @ OpenSMILES ~/.julia/packages/OpenSMILES/LgYRr/src/SMILESParser.jl:81 [2] ParseSMILES(S::String) @ OpenSMILES ~/.julia/packages/OpenSMILES/LgYRr/src/SMILESParser.jl:7 [3] top-level scope @ ~/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:43 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [5] macro expansion @ ~/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:43 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [7] top-level scope @ none:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [10] _start() @ Base ./client.jl:550 Test Summary: | Error Total Time ParseOpenSMILES Checking Implicit Hydrogens on Simple Molecules | 1 1 6.5s RNG of the outermost testset: Random.Xoshiro(0xdab05cc6e54689e3, 0xb4d0282f34ea14fe, 0xca2d3c0b8619b840, 0xa41c7b21aaa96f39, 0x68ca5f79cd276cac) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/OpenSMILES/LgYRr/test/runtests.jl:42 Testing failed after 23.85s ERROR: LoadError: Package OpenSMILES errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 97.45s: package tests unexpectedly errored