Package evaluation to test Oceananigans on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T22:26:31.660 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.22s ################################################################################ # Installation # Installing Oceananigans... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [9e8cae18] + Oceananigans v0.110.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.6.1 [a9b6321e] + Atomix v1.1.3 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [7445602f] + CubedSphere v0.3.4 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [21656369] + ExpressionExplorer v1.1.4 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.19.0 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.5.0 [076d061b] + HashArrayMappedTries v0.2.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.4 [692b3bcd] + JLLWrappers v1.8.0 [63c18a36] + KernelAbstractions v0.9.41 [ba0b0d4f] + Krylov v0.10.6 [da04e1cc] + MPI v0.20.26 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [46d2c3a1] + MuladdMacro v0.2.4 [9e8cae18] + Oceananigans v0.110.2 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [94ee1d12] + Quaternions v0.7.7 [a3311ec8] + ReactantCore v0.1.20 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [7e506255] + ScopedValues v1.6.2 [d496a93d] + SeawaterPolynomials v0.3.10 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [09ab397b] + StructArrays v0.7.3 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [6aa5eb33] + TaylorSeries v0.20.10 [013be700] + UnsafeAtomics v0.3.1 [f5851436] + FFTW_jll v3.3.12+0 [e33a78d0] + Hwloc_jll v2.14.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.11+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [1317d2d5] + oneTBB_jll v2022.3.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 10.53s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 5813.8 ms ✓ Reactant_jll 55842.0 ms ✓ GPUCompiler 149044.2 ms ✓ Oceananigans 12248.7 ms ✓ SPIRVIntrinsics 141690.1 ms ✓ Enzyme 86921.8 ms ✓ CUDACore 58059.0 ms ✓ Metal 115646.6 ms ✓ AMDGPU 172749.8 ms ✓ Oceananigans → OceananigansNCDatasetsExt 178670.9 ms ✓ Oceananigans → OceananigansZarrExt 847849.0 ms ✓ Oceananigans → OceananigansMakieExt 14723.7 ms ✓ SPIRVIntrinsics → SPIRVIntrinsicsSIMDExt 105036.7 ms ✓ oneAPI 156212.1 ms ✓ Enzyme → EnzymeSpecialFunctionsExt 31363.7 ms ✓ Enzyme → EnzymeStaticArraysExt 27407.2 ms ✓ Enzyme → EnzymeChainRulesCoreExt 29639.2 ms ✓ Enzyme → EnzymeLogExpFunctionsExt 30462.3 ms ✓ Enzyme → EnzymeBFloat16sExt 29619.3 ms ✓ Enzyme → EnzymeGPUArraysCoreExt 31130.4 ms ✓ QuadGK → QuadGKEnzymeExt 188890.1 ms ✓ Oceananigans → OceananigansEnzymeExt 14337.4 ms ✓ cuFFT 12797.2 ms ✓ CUDACore → EnzymeCoreExt 15807.7 ms ✓ cuRAND 12619.1 ms ✓ CUDACore → SpecialFunctionsExt 12893.2 ms ✓ CUDACore → ChainRulesCoreExt 108493.8 ms ✓ CUPTI ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 39 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 [inlined] success at ./process.jl:555 jfptr_success_6905.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #compilecache#914 at ./loading.jl:3236 compilecache at ./loading.jl:3192 [inlined] #_precompilepkgs##36 at ./precompilation.jl:1075 with_logstate at ./logging/logging.jl:542 with_logger at ./logging/logging.jl:653 [inlined] #_precompilepkgs##34 at ./precompilation.jl:1069 [inlined] #mkpidlock#8 at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 jfptr_YY.mkpidlockYY.8_49511.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mkpidlock at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 #mkpidlock#7 at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] mkpidlock at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 jfptr_mkpidlock_68876.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 #trymkpidlock#13 at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 trymkpidlock at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:115 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:900 #invokelatest_gr#239 at ./reflection.jl:1297 [inlined] invokelatest_gr at ./reflection.jl:1289 [inlined] precompile_pkgs_maybe_cachefile_lock at ./precompilation.jl:1310 macro expansion at ./timing.jl:461 [inlined] #_precompilepkgs##30 at ./precompilation.jl:1068 jfptr_YY._precompilepkgsYY.YY.30_3976.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007c107401b670 Total snapshots: 360. Utilization: 0% ╎360 @Base/precompilation.jl:1068 (::Base.Precompilation.var"#_precompilepk… ╎ 360 @Base/timing.jl:461 macro expansion ╎ 360 @Base/…ecompilation.jl:1310 precompile_pkgs_maybe_cachefile_lock(f::… ╎ 360 @Base/reflection.jl:1289 invokelatest_gr ╎ 360 @Base/reflection.jl:1297 #invokelatest_gr#239 ╎ 360 @FileWatching/…ile.jl:115 kwcall(::@NamedTuple{stale_age::Int64},… ╎ ╎ 360 @FileWatching/…ile.jl:117 trymkpidlock(::Function, ::Vararg{Any}… ╎ ╎ 360 @FileWatching/…ile.jl:91 kwcall(::@NamedTuple{stale_age::Int64,… ╎ ╎ 360 @FileWatching/…le.jl:91 #mkpidlock#7 ╎ ╎ 360 @FileWatching/…le.jl:93 kwcall(::@NamedTuple{stale_age::Int64… ╎ ╎ 360 @FileWatching/…le.jl:96 mkpidlock(f::Base.Precompilation.var… ╎ ╎ ╎ 360 @Base/…pilation.jl:1069 #_precompilepkgs##34 ╎ ╎ ╎ 360 @Base/…/logging.jl:653 with_logger ╎ ╎ ╎ 360 @Base/…/logging.jl:542 with_logstate(f::Base.Precompilati… ╎ ╎ ╎ 360 @Base/…ilation.jl:1075 (::Base.Precompilation.var"#_prec… ╎ ╎ ╎ 360 @Base/loading.jl:3192 compilecache ╎ ╎ ╎ ╎ 360 @Base/loading.jl:3236 compilecache(pkg::Base.PkgId, pa… ╎ ╎ ╎ ╎ 360 @Base/process.jl:555 success(x::Base.Process) ╎ ╎ ╎ ╎ 360 @Base/process.jl:686 wait ╎ ╎ ╎ ╎ 360 @Base/process.jl:693 wait(x::Base.Process, syncd::B… ╎ ╎ ╎ ╎ 360 @Base/…ition.jl:136 wait ╎ ╎ ╎ ╎ ╎ 360 @Base/…ition.jl:141 wait(c::Base.GenericCondition… ╎ ╎ ╎ ╎ ╎ 360 @Base/task.jl:1228 wait() 359╎ ╎ ╎ ╎ ╎ 360 @Base/task.jl:1216 poptask(W::Base.IntrusiveLin… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 task_done_hook at ./task.jl:868 jfptr_task_done_hook_43684.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_finish_task at /source/src/task.c:342 start_task at /source/src/task.c:1264 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e537fba06a0 Total snapshots: 385. Utilization: 0% ╎385 @Base/task.jl:868 task_done_hook(t::Task) ╎ 385 @Base/task.jl:1228 wait() 384╎ 385 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronized{T… [39] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #653 at ./asyncevent.jl:359 jfptr_YY.653_3180.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 28749954 (Pool: 28748924; Big: 1030); GC: 25 [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:156 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 15687134 (Pool: 15686431; Big: 703); GC: 12 PkgEval terminated after 2751.1s: test duration exceeded the time limit