Package evaluation to test OceanBioME on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T03:15:28.720 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.01s ################################################################################ # Installation # Installing OceanBioME... Resolving package versions... Installed GPUArraysCore ─────────────── v0.2.0 Installed RealDot ───────────────────── v0.1.0 Installed Crayons ───────────────────── v4.1.1 Installed MuladdMacro ───────────────── v0.2.4 Installed Scratch ───────────────────── v1.3.0 Installed MPICH_jll ─────────────────── v5.0.1+0 Installed MPIABI_jll ────────────────── v0.1.5+0 Installed Adapt ─────────────────────── v4.6.1 Installed oneTBB_jll ────────────────── v2022.3.0+0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed JLD2 ──────────────────────── v0.6.4 Installed OffsetArrays ──────────────── v1.17.0 Installed demumble_jll ──────────────── v1.3.0+0 Installed Xorg_libpciaccess_jll ─────── v0.19.0+0 Installed NVML ──────────────────────── v6.2.0 Installed Zstd_jll ──────────────────── v1.5.7+1 Installed cuFFT ─────────────────────── v6.2.0 Installed CUPTI ─────────────────────── v6.2.0 Installed PrettyTables ──────────────── v3.3.2 Installed Preferences ───────────────── v1.5.2 Installed TableTraits ───────────────── v1.0.1 Installed FFTW ──────────────────────── v1.10.0 Installed CUDA_Driver_jll ───────────── v13.3.0+0 Installed Hwloc_jll ─────────────────── v2.14.0+0 Installed cuSOLVER ──────────────────── v6.2.0 Installed LLVMLoopInfo ──────────────── v1.0.0 Installed Tables ────────────────────── v1.12.1 Installed ChunkCodecLibZlib ─────────── v1.0.0 Installed TaylorSeries ──────────────── v0.20.10 Installed MPI ───────────────────────── v0.20.26 Installed GPUCompiler ───────────────── v1.22.1 Installed CUDACore ──────────────────── v6.2.0 Installed GibbsSeaWater ─────────────── v0.1.4 Installed HashArrayMappedTries ──────── v0.2.0 Installed DataAPI ───────────────────── v1.16.0 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 Installed PkgVersion ────────────────── v0.3.3 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed AbstractFFTs ──────────────── v1.5.0 Installed CUDATools ─────────────────── v6.2.0 Installed OpenMPI_jll ───────────────── v5.0.11+0 Installed JLLWrappers ───────────────── v1.8.0 Installed ChunkCodecLibZstd ─────────── v1.0.0 Installed Tracy ─────────────────────── v0.1.6 Installed CubedSphere ───────────────── v0.3.4 Installed StaticArraysCore ──────────── v1.4.4 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed StaticArrays ──────────────── v1.9.18 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed ConstructionBase ──────────── v1.6.0 Installed PrecompileTools ───────────── v1.3.4 Installed CUDA_Runtime_Discovery ────── v2.1.0 Installed LLVMExtra_jll ─────────────── v0.0.43+1 Installed CUDA_Compiler_jll ─────────── v0.4.4+0 Installed NVTX ──────────────────────── v1.0.3 Installed DataValueInterfaces ───────── v1.0.0 Installed NVTX_jll ──────────────────── v3.2.2+0 Installed OrderedCollections ────────── v1.8.2 Installed StructArrays ──────────────── v0.7.3 Installed ChunkCodecCore ────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed CEnum ─────────────────────── v0.5.0 Installed GPUArrays ─────────────────── v11.5.8 Installed ReactantCore ──────────────── v0.1.20 Installed cuSPARSE ──────────────────── v6.2.0 Installed ScopedValues ──────────────── v1.6.2 Installed GPUToolbox ────────────────── v1.1.1 Installed BFloat16s ─────────────────── v0.6.1 Installed Random123 ─────────────────── v1.7.1 Installed FileIO ────────────────────── v1.19.0 Installed MPIPreferences ────────────── v0.1.12 Installed JuliaNVTXCallbacks_jll ────── v0.2.1+0 Installed Reexport ──────────────────── v1.2.2 Installed SeawaterPolynomials ───────── v0.3.10 Installed Statistics ────────────────── v1.11.1 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed CUDA_Runtime_jll ──────────── v0.23.0+0 Installed LibTracyClient_jll ────────── v0.13.1+0 Installed MPItrampoline_jll ─────────── v5.5.6+0 Installed Requires ──────────────────── v1.3.1 Installed RandomNumbers ─────────────── v1.6.0 Installed Quaternions ───────────────── v0.7.7 Installed StatsAPI ──────────────────── v1.8.0 Installed ExprTools ─────────────────── v0.1.10 Installed cuRAND ────────────────────── v6.2.0 Installed GibbsSeaWater_jll ─────────── v3.5.2+0 Installed Krylov ────────────────────── v0.10.6 Installed MacroTools ────────────────── v0.5.16 Installed Rotations ─────────────────── v1.7.1 Installed KernelAbstractions ────────── v0.9.41 Installed FFTW_jll ──────────────────── v3.3.12+0 Installed Distances ─────────────────── v0.10.12 Installed cuBLAS ────────────────────── v6.2.0 Installed NVPTX_LLVM_Backend_jll ────── v22.1.7+1 Installed Glob ──────────────────────── v1.5.0 Installed UnsafeAtomics ─────────────── v0.3.1 Installed StringManipulation ────────── v0.4.4 Installed CUDA ──────────────────────── v6.2.0 Installed DocStringExtensions ───────── v0.9.5 Installed ExpressionExplorer ────────── v1.1.4 Installed Atomix ────────────────────── v1.1.3 Installed OceanBioME ────────────────── v0.17.6 Installed LLVM ──────────────────────── v9.9.0 Installed Oceananigans ──────────────── v0.110.2 Installing 16 artifacts Installed artifact JuliaNVTXCallbacks 8.6 KiB Installed artifact NVTX 13.7 KiB Installed artifact LibTracyClient 502.2 KiB Installed artifact Zstd 646.0 KiB Installed artifact GibbsSeaWater 1.7 MiB Installed artifact demumble 322.0 KiB Installed artifact FFTW 2.2 MiB Installed artifact Xorg_libpciaccess 26.2 KiB Installed artifact XML2 2.5 MiB Installed artifact LLVMExtra 3.2 MiB Installed artifact Hwloc 3.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact MPICH 8.8 MiB Installed artifact NVPTX_LLVM_Backend 24.5 MiB Installed artifact CUDA_Compiler 134.8 MiB Installed artifact CUDA_Driver 145.9 MiB Updating `~/.julia/environments/v1.12/Project.toml` [a49af516] + OceanBioME v0.17.6 Updating `~/.julia/environments/v1.12/Manifest.toml` Precompiling packages... 1361.4 ms ✓ Preferences 1118.3 ms ✓ JLLWrappers 3281.9 ms ✓ CUDA_Driver_jll 6314.8 ms ✓ CUDA_Runtime_jll 4 dependencies successfully precompiled in 12 seconds. 27 already precompiled. 3 dependencies precompiled but different versions are currently loaded (Dates, Printf and TOML). Restart julia to access the new versions. Otherwise, 7 dependents of these packages may trigger further precompilation to work with the unexpected versions. [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.6.1 [a9b6321e] + Atomix v1.1.3 [ab4f0b2a] + BFloat16s v0.6.1 [fa961155] + CEnum v0.5.0 [052768ef] + CUDA v6.2.0 [bd0ed864] + CUDACore v6.2.0 [9ec180c6] + CUDATools v6.2.0 [1af6417a] + CUDA_Runtime_Discovery v2.1.0 [9e67e8f6] + CUPTI v6.2.0 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [7445602f] + CubedSphere v0.3.4 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [21656369] + ExpressionExplorer v1.1.4 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.19.0 [0c68f7d7] + GPUArrays v11.5.8 [46192b85] + GPUArraysCore v0.2.0 [61eb1bfa] + GPUCompiler v1.22.1 [096a3bc2] + GPUToolbox v1.1.1 [9a22fb26] + GibbsSeaWater v0.1.4 [c27321d9] + Glob v1.5.0 [076d061b] + HashArrayMappedTries v0.2.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.4 [692b3bcd] + JLLWrappers v1.8.0 [63c18a36] + KernelAbstractions v0.9.41 [ba0b0d4f] + Krylov v0.10.6 [929cbde3] + LLVM v9.9.0 [8b046642] + LLVMLoopInfo v1.0.0 [b964fa9f] + LaTeXStrings v1.4.0 [da04e1cc] + MPI v0.20.26 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [46d2c3a1] + MuladdMacro v0.2.4 [611af6d1] + NVML v6.2.0 [5da4648a] + NVTX v1.0.3 [a49af516] + OceanBioME v0.17.6 [9e8cae18] + Oceananigans v0.110.2 [6fe1bfb0] + OffsetArrays v1.17.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [94ee1d12] + Quaternions v0.7.7 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [a3311ec8] + ReactantCore v0.1.20 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [7e506255] + ScopedValues v1.6.2 [6c6a2e73] + Scratch v1.3.0 [d496a93d] + SeawaterPolynomials v0.3.10 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [892a3eda] + StringManipulation v0.4.4 [09ab397b] + StructArrays v0.7.3 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [6aa5eb33] + TaylorSeries v0.20.10 [e689c965] + Tracy v0.1.6 [013be700] + UnsafeAtomics v0.3.1 [182d3088] + cuBLAS v6.2.0 [533571aa] + cuFFT v6.2.0 [20fd9a0b] + cuRAND v6.2.0 [887afef0] + cuSOLVER v6.2.0 [b26da814] + cuSPARSE v6.2.0 [d1e2174e] + CUDA_Compiler_jll v0.4.4+0 [4ee394cb] + CUDA_Driver_jll v13.3.0+0 [76a88914] + CUDA_Runtime_jll v0.23.0+0 [f5851436] + FFTW_jll v3.3.12+0 [6727f6b2] + GibbsSeaWater_jll v3.5.2+0 [e33a78d0] + Hwloc_jll v2.14.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 [dad2f222] + LLVMExtra_jll v0.0.43+1 [ad6e5548] + LibTracyClient_jll v0.13.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [ef6e0fe3] + NVPTX_LLVM_Backend_jll v22.1.7+1 [e98f9f5b] + NVTX_jll v3.2.2+0 [fe0851c0] + OpenMPI_jll v5.0.11+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [1e29f10c] + demumble_jll v1.3.0+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building GibbsSeaWater → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/f4318e7a751703a5db8b57c112e5cd5c218d296b/build.log` Installation completed after 56.8s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4216.3 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1041.3 ms ✓ Preferences 895.1 ms ✓ JLLWrappers 1094.2 ms ✓ CUDA_Driver_jll 4412.1 ms ✓ CUDA_Runtime_jll 4 dependencies successfully precompiled in 8 seconds. 27 already precompiled. 3 dependencies precompiled but different versions are currently loaded (Dates, Printf and TOML). Restart julia to access the new versions. Otherwise, 7 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling package dependencies... Precompiling packages... 997.4 ms ✓ LLVMLoopInfo 1527.7 ms ✓ ExpressionExplorer 818.5 ms ✓ MuladdMacro 1008.7 ms ✓ AbstractFFTs 843.4 ms ✓ LaTeXStrings 1019.6 ms ✓ Glob 908.6 ms ✓ ExprTools 725.1 ms ✓ IteratorInterfaceExtensions 4007.7 ms ✓ UnsafeAtomics 1592.8 ms ✓ StatsAPI 1049.5 ms ✓ ChunkCodecCore 3629.7 ms ✓ CEnum 1027.9 ms ✓ ANSIColoredPrinters 1750.1 ms ✓ OffsetArrays 1139.5 ms ✓ SeawaterPolynomials 1099.9 ms ✓ Statistics 7236.8 ms ✓ MacroTools 1620.4 ms ✓ RandomNumbers 4170.1 ms ✓ OrderedCollections 753.2 ms ✓ DataValueInterfaces 782.5 ms ✓ RealDot 752.2 ms ✓ Reexport 1123.9 ms ✓ DocStringExtensions 1092.8 ms ✓ AbstractTrees 1224.4 ms ✓ URIs 785.6 ms ✓ SimpleBufferStream 2341.1 ms ✓ CUDA_Runtime_Discovery 1280.8 ms ✓ TranscodingStreams 923.3 ms ✓ HashArrayMappedTries 920.6 ms ✓ LazilyInitializedFields 4024.5 ms ✓ ConstructionBase 915.3 ms ✓ Adapt 850.6 ms ✓ DataAPI 4899.3 ms ✓ Crayons 924.1 ms ✓ BitFlags 1042.8 ms ✓ StaticArraysCore 1797.5 ms ✓ ConcurrentUtilities 1238.0 ms ✓ Requires 832.8 ms ✓ IOCapture 16326.4 ms ✓ Krylov 4018.6 ms ✓ BFloat16s 4649.6 ms ✓ StructUtils 1003.6 ms ✓ Scratch 1086.9 ms ✓ LoggingExtras 10445.5 ms ✓ TaylorSeries 1581.2 ms ✓ MPIPreferences 1106.5 ms ✓ PrecompileTools 1633.8 ms ✓ ExceptionUnwrapping 1447.4 ms ✓ Xorg_libpciaccess_jll 1411.5 ms ✓ NVTX_jll 1403.6 ms ✓ LibTracyClient_jll 1532.2 ms ✓ demumble_jll 1458.1 ms ✓ MbedTLS_jll 1465.6 ms ✓ Zstd_jll 1464.5 ms ✓ NVPTX_LLVM_Backend_jll 1477.3 ms ✓ Expat_jll 1465.5 ms ✓ GibbsSeaWater_jll 1536.6 ms ✓ OpenSSH_jll 1462.9 ms ✓ JuliaNVTXCallbacks_jll 1132.1 ms ✓ MicrosoftMPI_jll 1452.9 ms ✓ Libiconv_jll 1482.6 ms ✓ Git_LFS_jll 1481.4 ms ✓ FFTW_jll 4372.8 ms ✓ PkgVersion 5281.6 ms ✓ CUDA_Compiler_jll 5134.3 ms ✓ IntelOpenMP_jll 5176.4 ms ✓ oneTBB_jll 5448.7 ms ✓ LLVMExtra_jll 4007.7 ms ✓ AbstractFFTs → AbstractFFTsTestExt 763.8 ms ✓ TableTraits 1027.7 ms ✓ Atomix 988.0 ms ✓ ChunkCodecLibZlib 4309.5 ms ✓ Distances 1396.1 ms ✓ Statistics → SparseArraysExt 1981.3 ms ✓ ReactantCore 1869.7 ms ✓ Random123 1084.7 ms ✓ Quaternions 1941.2 ms ✓ MarkdownAST 982.3 ms ✓ CodecZlib 926.3 ms ✓ ScopedValues 5609.3 ms ✓ RegistryInstances 838.3 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1338.2 ms ✓ Adapt → AdaptSparseArraysExt 1225.8 ms ✓ GPUArraysCore 878.4 ms ✓ OffsetArrays → OffsetArraysAdaptExt 4793.4 ms ✓ OpenSSL 9378.0 ms ✓ FileIO 851.3 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 4459.4 ms ✓ MPItrampoline_jll 17304.1 ms ✓ StaticArrays 3374.3 ms ✓ StringManipulation 14223.8 ms ✓ Parsers 2222.9 ms ✓ Tracy 1909.9 ms ✓ MbedTLS 1147.3 ms ✓ ChunkCodecLibZstd 1901.0 ms ✓ GibbsSeaWater 1510.4 ms ✓ NVTX 1546.7 ms ✓ XML2_jll 1524.5 ms ✓ Git_jll 10597.6 ms ✓ MKL_jll 21493.6 ms ✓ LLVM 4489.6 ms ✓ Tables 1320.4 ms ✓ Distances → DistancesSparseArraysExt 1352.4 ms ✓ StaticArrays → StaticArraysStatisticsExt 1360.5 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1299.6 ms ✓ Adapt → AdaptStaticArraysExt 2695.3 ms ✓ TaylorSeries → TaylorSeriesSAExt 6404.5 ms ✓ Rotations 9406.7 ms ✓ JSON 31831.6 ms ✓ HTTP 55722.8 ms ✓ JLD2 1487.1 ms ✓ Hwloc_jll 887.4 ms ✓ Git 7566.4 ms ✓ FFTW 5040.3 ms ✓ GPUToolbox 5219.7 ms ✓ LLVM → BFloat16sExt 59942.7 ms ✓ GPUCompiler 5985.8 ms ✓ UnsafeAtomics → UnsafeAtomicsLLVM 4560.6 ms ✓ StructArrays 858.8 ms ✓ StructUtils → StructUtilsTablesExt 50483.2 ms ✓ PrettyTables 3022.8 ms ✓ CubedSphere 11969.3 ms ✓ KernelAbstractions 6776.9 ms ✓ DataDeps 6942.7 ms ✓ FileIO → HTTPExt 6473.7 ms ✓ TaylorSeries → TaylorSeriesJLD2Ext 4482.5 ms ✓ OpenMPI_jll 4354.0 ms ✓ MPIABI_jll 1569.1 ms ✓ MPICH_jll 62267.1 ms ✓ Documenter 874.4 ms ✓ StructArrays → StructArraysAdaptExt 1540.9 ms ✓ StructArrays → StructArraysSparseArraysExt 4323.8 ms ✓ StructArrays → StructArraysStaticArraysExt 911.4 ms ✓ StructArrays → StructArraysLinearAlgebraExt 3114.2 ms ✓ KernelAbstractions → SparseArraysExt 2210.9 ms ✓ KernelAbstractions → LinearAlgebraExt 2589.4 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 13856.5 ms ✓ MPI 19788.6 ms ✓ GPUArrays 63026.8 ms ✓ Oceananigans 8580.2 ms ✓ GPUArrays → JLD2Ext 87302.3 ms ✓ CUDACore 17504.0 ms ✓ NVML 15001.6 ms ✓ cuRAND 19460.8 ms ✓ CUPTI 14043.3 ms ✓ cuFFT 22586.3 ms ✓ cuSPARSE 25663.5 ms ✓ cuBLAS 41543.4 ms ✓ CUDATools 28113.7 ms ✓ cuSOLVER 23566.2 ms ✓ CUDA 21959.6 ms ✓ Atomix → AtomixCUDAExt 22512.7 ms ✓ MPI → CUDAExt 29691.2 ms ✓ Oceananigans → OceananigansCUDAExt 45378.3 ms ✓ OceanBioME 155 dependencies successfully precompiled in 1184 seconds. 41 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 110 dependents of these packages may trigger further precompilation to work with the unexpected versions. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 1236.99s ################################################################################ # Testing # Testing OceanBioME Status `/tmp/jl_cUkK5T/Project.toml` [79e6a3ab] Adapt v4.6.1 [a9b6321e] Atomix v1.1.3 [052768ef] CUDA v6.2.0 [124859b0] DataDeps v0.7.14 [e30172f5] Documenter v1.17.0 [9a22fb26] GibbsSeaWater v0.1.4 [033835bb] JLD2 v0.6.4 [63c18a36] KernelAbstractions v0.9.41 [a49af516] OceanBioME v0.17.6 [9e8cae18] Oceananigans v0.110.2 [6fe1bfb0] OffsetArrays v1.17.0 [d496a93d] SeawaterPolynomials v0.3.10 [10745b16] Statistics v1.11.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_cUkK5T/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.6.1 [a9b6321e] Atomix v1.1.3 [ab4f0b2a] BFloat16s v0.6.1 [d1d4a3ce] BitFlags v0.1.10 [fa961155] CEnum v0.5.0 [052768ef] CUDA v6.2.0 [bd0ed864] CUDACore v6.2.0 [9ec180c6] CUDATools v6.2.0 [1af6417a] CUDA_Runtime_Discovery v2.1.0 [9e67e8f6] CUPTI v6.2.0 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [944b1d66] CodecZlib v0.7.8 [f0e56b4a] ConcurrentUtilities v2.5.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [7445602f] CubedSphere v0.3.4 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.14 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [21656369] ExpressionExplorer v1.1.4 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.19.0 [0c68f7d7] GPUArrays v11.5.8 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.22.1 [096a3bc2] GPUToolbox v1.1.1 [9a22fb26] GibbsSeaWater v0.1.4 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.5.0 ⌅ [cd3eb016] HTTP v1.11.0 [076d061b] HashArrayMappedTries v0.2.0 [b5f81e59] IOCapture v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.4 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [63c18a36] KernelAbstractions v0.9.41 [ba0b0d4f] Krylov v0.10.6 [929cbde3] LLVM v9.9.0 [8b046642] LLVMLoopInfo v1.0.0 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [e6f89c97] LoggingExtras v1.2.0 [da04e1cc] MPI v0.20.26 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.3 [739be429] MbedTLS v1.1.10 [46d2c3a1] MuladdMacro v0.2.4 [611af6d1] NVML v6.2.0 [5da4648a] NVTX v1.0.3 [a49af516] OceanBioME v0.17.6 [9e8cae18] Oceananigans v0.110.2 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.6.1 ⌅ [bac558e1] OrderedCollections v1.8.2 [69de0a69] Parsers v2.8.6 [eebad327] PkgVersion v0.3.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [94ee1d12] Quaternions v0.7.7 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [a3311ec8] ReactantCore v0.1.20 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [6038ab10] Rotations v1.7.1 [7e506255] ScopedValues v1.6.2 [6c6a2e73] Scratch v1.3.0 [d496a93d] SeawaterPolynomials v0.3.10 [777ac1f9] SimpleBufferStream v1.2.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [892a3eda] StringManipulation v0.4.4 [09ab397b] StructArrays v0.7.3 [ec057cc2] StructUtils v2.8.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 ⌅ [6aa5eb33] TaylorSeries v0.20.10 [e689c965] Tracy v0.1.6 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [013be700] UnsafeAtomics v0.3.1 [182d3088] cuBLAS v6.2.0 [533571aa] cuFFT v6.2.0 [20fd9a0b] cuRAND v6.2.0 [887afef0] cuSOLVER v6.2.0 [b26da814] cuSPARSE v6.2.0 [d1e2174e] CUDA_Compiler_jll v0.4.4+0 [4ee394cb] CUDA_Driver_jll v13.3.0+0 [76a88914] CUDA_Runtime_jll v0.23.0+0 [2e619515] Expat_jll v2.8.1+0 [f5851436] FFTW_jll v3.3.12+0 [6727f6b2] GibbsSeaWater_jll v3.5.2+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.54.0+0 [e33a78d0] Hwloc_jll v2.14.0+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [9c1d0b0a] JuliaNVTXCallbacks_jll v0.2.1+0 [dad2f222] LLVMExtra_jll v0.0.43+1 [ad6e5548] LibTracyClient_jll v0.13.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [b5ada748] MPIABI_jll v0.1.5+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [ef6e0fe3] NVPTX_LLVM_Backend_jll v22.1.7+1 [e98f9f5b] NVTX_jll v3.2.2+0 [fe0851c0] OpenMPI_jll v5.0.11+0 [9bd350c2] OpenSSH_jll v10.3.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 [3161d3a3] Zstd_jll v1.5.7+1 [1e29f10c] demumble_jll v1.3.0+0 [1317d2d5] oneTBB_jll v2022.3.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Benchmark times are given for each solver, but should be taken with a pinch of salt as they vary a lot depending on the problem and start point [ Info: Tested NewtonRaphsonSolver with benchmark time: 1077.7ns per solve [ Info: Tested NewtonRaphsonSafeSolver with benchmark time: 967.6ns per solve [ Info: Tested DampedNewtonRaphsonSolver with benchmark time: 1038.3ns per solve [ Info: Tested Bisection with benchmark time: 3443.6ns per solve Test Summary: | Pass Total Time Testing solvers | 20 20 7.3s [ Info: Initializing simulation... [ Info: ... simulation initialization complete (518.708 ms) [ Info: Executing initial time step... [ Info: Simulation is stopping after running for 0 seconds. [ Info: Model iteration 1 equals or exceeds stop iteration 1. [ Info: ... initial time step complete (11.816 seconds). [ Info: Initializing simulation... [ Info: ... simulation initialization complete (302.039 ms) [ Info: Executing initial time step... [ Info: Simulation is stopping after running for 0 seconds. [ Info: Model iteration 1 equals or exceeds stop iteration 1. [ Info: ... initial time step complete (1.041 seconds). Test Summary: | Pass Total Time Test negative tracer handeling | 2 2 4m25.7s Test Summary: | Pass Total Time Test sinking velocity setup | 6 6 2.3s ┌ Info: Testing light with in NonhydrostaticModel on 2×2×2 RectilinearGrid{Float64, Periodic, Periodic, Bounded} on CPU with 2×2×2 halo │ ├── Periodic x ∈ [0.0, 2.0) regularly spaced with Δx=1.0 │ ├── Periodic y ∈ [0.0, 2.0) regularly spaced with Δy=1.0 └ └── Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... ┌ Info: Testing light with in HydrostaticFreeSurfaceModel on 2×2×2 RectilinearGrid{Float64, Periodic, Periodic, Bounded} on CPU with 2×2×2 halo │ ├── Periodic x ∈ [0.0, 2.0) regularly spaced with Δx=1.0 │ ├── Periodic y ∈ [0.0, 2.0) regularly spaced with Δy=1.0 └ └── Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... ┌ Info: Testing light with in HydrostaticFreeSurfaceModel on 5×5×2 LatitudeLongitudeGrid{Float64, Periodic, Bounded, Bounded} on CPU with 3×3×2 halo │ ├── longitude: Periodic λ ∈ [-180.0, 180.0) regularly spaced with Δλ=72.0 │ ├── latitude: Bounded φ ∈ [-85.0, 85.0] regularly spaced with Δφ=34.0 └ └── z: Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... Test Summary: | Pass Total Time Light attenuaiton model | 36 36 13m32.2s Test Summary: | Pass Total Time Float32 TwoBandPhotosyntheticallyActiveRadiation | 8 8 4.0s Test Summary: | Pass Total Time Testing basic particle property integration | 3 3 34.5s WARNING: Method definition required_tracers(Main.SimpleParticleBiogeochemistry) in module Main at /home/pkgeval/.julia/packages/OceanBioME/xxFfF/test/test_particles.jl:18 overwritten at /home/pkgeval/.julia/packages/OceanBioME/xxFfF/test/test_particles.jl:50. Test Summary: | Pass Total Time Testing particle tracer detection | 2 2 19.7s Test Summary: | Pass Total Time Testing particle lagrangian advection | 2 2 6.0s WARNING: Method definition coupled_tracers(Main.SimpleParticleBiogeochemistry) in module Main at /home/pkgeval/.julia/packages/OceanBioME/xxFfF/test/test_particles.jl:19 overwritten at /home/pkgeval/.julia/packages/OceanBioME/xxFfF/test/test_particles.jl:90. WARNING: Method definition SimpleParticleBiogeochemistry(Base.Val{:A}, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/OceanBioME/xxFfF/test/test_particles.jl:52 overwritten at /home/pkgeval/.julia/packages/OceanBioME/xxFfF/test/test_particles.jl:92. Test Summary: | Pass Total Time Testing particle-tracer uptake | 2 2 2.9s Test Summary: | Pass Total Time Testing particle-tracer uptake with scalefactors | 2 2 0.1s [ Info: Constructed (:NO₃, :NH₄, :P, :Z, :sPOM, :bPOM, :DOM) [ Info: Constructed (:NO₃, :NH₄, :Fe, :P, :Z, :sPOM, :bPOM, :DOM) [ Info: Constructed (:N, :P, :Z, :sPOM, :bPOM, :DOM) [ Info: Constructed (:NO₃, :NH₄, :P, :Z, :sPOM, :bPOM, :DOM, :DIC, :Alk) [ Info: Constructed (:NO₃, :NH₄, :Fe, :P, :Z, :sPOM, :bPOM, :DOM, :DIC, :Alk) [ Info: Constructed (:N, :P, :Z, :sPOM, :bPOM, :DOM, :DIC, :Alk) ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1232 running 1 of 1 signal (10): User defined signal 1 _useref_getindex at ./../usr/share/julia/Compiler/src/ssair/ir.jl:0 _advance at ./../usr/share/julia/Compiler/src/ssair/ir.jl:653 iterate at ./../usr/share/julia/Compiler/src/ssair/ir.jl:661 [inlined] kill_current_uses! at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1116 setindex! at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1122 jfptr_setindexNOT._28087.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 tojlinvoke85874.1 at /opt/julia/lib/julia/sys.so (unknown line) j_setindexNOT._80379.1 at /opt/julia/lib/julia/sys.so (unknown line) setindex! at ./../usr/share/julia/Compiler/src/ssair/ir.jl:1154 [inlined] ir_inline_item! at ./../usr/share/julia/Compiler/src/ssair/inlining.jl:414 batch_inline! at ./../usr/share/julia/Compiler/src/ssair/inlining.jl:663 ssa_inlining_pass! at ./../usr/share/julia/Compiler/src/ssair/inlining.jl:79 [inlined] run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1013 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1027 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1002 jfptr_optimize_82569.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:202 jfptr_finish_nocycle_80505.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4588 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1256 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1439 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1448 jfptr_typeinf_ext_toplevel_82967.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_type_infer at /source/src/gf.c:466 jl_compile_method_internal at /source/src/gf.c:3516 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 __run at /home/pkgeval/.julia/packages/KernelAbstractions/ecO4B/src/cpu.jl:112 unknown function (ip: 0x77956d773b57) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #_#21 at /home/pkgeval/.julia/packages/KernelAbstractions/ecO4B/src/cpu.jl:46 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 Kernel at /home/pkgeval/.julia/packages/KernelAbstractions/ecO4B/src/cpu.jl:39 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 #_launch!#14 at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Utils/kernel_launching.jl:380 _launch! at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Utils/kernel_launching.jl:353 [inlined] #launch!#9 at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Utils/kernel_launching.jl:330 [inlined] launch! at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Utils/kernel_launching.jl:330 [inlined] #compute_interior_tendency_contributions!#25 at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Models/NonhydrostaticModels/compute_nonhydrostatic_tendencies.jl:95 compute_interior_tendency_contributions! at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Models/NonhydrostaticModels/compute_nonhydrostatic_tendencies.jl:43 [inlined] compute_tendencies! at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Models/NonhydrostaticModels/compute_nonhydrostatic_tendencies.jl:30 update_state! at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Models/NonhydrostaticModels/update_nonhydrostatic_model_state.jl:56 update_state! at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Models/NonhydrostaticModels/update_nonhydrostatic_model_state.jl:24 unknown function (ip: 0x77956d7474a2) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #NonhydrostaticModel#10 at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Models/NonhydrostaticModels/nonhydrostatic_model.jl:309 unknown function (ip: 0x77956d731817) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 NonhydrostaticModel at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Models/NonhydrostaticModels/nonhydrostatic_model.jl:124 unknown function (ip: 0x77956d730170) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 top-level scope at /home/pkgeval/.julia/packages/OceanBioME/xxFfF/test/test_NutrientsPlanktonDetritus.jl:49 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 jl_toplevel_eval_flex at /source/src/toplevel.c:1024 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7795ddfe1249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_70429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x7c189239e843) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x7c1892391a2c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x7c1892390119) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x7c189238fd51) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x7c1892387c40) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x7c189238468f) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7c18accfc249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== [ Info: Constructed (:NO₃, :NH₄, :P, :Z, :sPOM, :bPOM, :DOM, :O₂) ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007c18923fc010 Total snapshots: 383. Utilization: 0% ╎383 @Base/client.jl:550 _start() ╎ 383 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 383 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 383 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ 383 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ 383 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 383 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 383 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 383 @Pkg/src/API.jl:157 test ╎ ╎ 383 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 383 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 383 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 383 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 383 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 383 @Pkg/…erations.jl:2387 test ╎ ╎ ╎ 383 @Pkg/…erations.jl:2481 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 383 @Pkg/…rations.jl:2215 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 383 @Pkg/…rations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 383 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 383 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 383 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 383 @Pkg/…tions.jl:2278 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 383 @Pkg/…tions.jl:2164 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 383 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 383 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 383 @Pkg/…ions.jl:2496 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 383 @Pkg/…ons.jl:2556 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 383 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 383 @Base/…ss.jl:693 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 383 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 383 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 383 @Base/…sk.jl:1228 wait() 382╎ ╎ ╎ ╎ ╎ ╎ ╎ 383 @Base/…sk.jl:1216 poptask(W::Base.Intr… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 28881236 (Pool: 28880289; Big: 947); GC: 44 [1232] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OceanBioME/xxFfF/test/test_NutrientsPlanktonDetritus.jl:41 unknown function (ip: 0x7795de051c14) at /lib/x86_64-linux-gnu/libc.so.6 malloc at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) operator new at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/new_op.cc:50 _ZN4llvm17ScheduleDAGInstrs12Value2SUsMap6insertEPNS_5SUnitENS_12PointerUnionIJPKNS_5ValueEPKNS_17PseudoSourceValueEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm17ScheduleDAGInstrs15buildSchedGraphEPNS_9AAResultsEPNS_18RegPressureTrackerEPNS_13PressureDiffsEPNS_13LiveIntervalsEb at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_120SchedulePostRATDList8scheduleEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_115PostRAScheduler20runOnMachineFunctionERN4llvm15MachineFunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1561 addModule at /source/src/jitlayers.cpp:2044 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824 jl_compile_method_internal at /source/src/gf.c:3528 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 #fill_halo_regions!#24 at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/BoundaryConditions/fill_halo_regions.jl:28 fill_halo_regions! at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/BoundaryConditions/fill_halo_regions.jl:21 [inlined] #fill_halo_regions!#66 at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Fields/field.jl:842 [inlined] fill_halo_regions! at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Fields/field.jl:828 unknown function (ip: 0x77956d7eaed6) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 #fill_halo_regions!#95 at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Fields/field_tuples.jl:70 fill_halo_regions! at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Fields/field_tuples.jl:67 unknown function (ip: 0x77956d7e0f58) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 update_state! at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Models/NonhydrostaticModels/update_nonhydrostatic_model_state.jl:38 update_state! at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Models/NonhydrostaticModels/update_nonhydrostatic_model_state.jl:24 unknown function (ip: 0x77956d7d7ad2) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #NonhydrostaticModel#10 at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Models/NonhydrostaticModels/nonhydrostatic_model.jl:309 unknown function (ip: 0x77956d7c5a37) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 NonhydrostaticModel at /home/pkgeval/.julia/packages/Oceananigans/8O4Bn/src/Models/NonhydrostaticModels/nonhydrostatic_model.jl:124 unknown function (ip: 0x77956d7c4300) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 top-level scope at /home/pkgeval/.julia/packages/OceanBioME/xxFfF/test/test_NutrientsPlanktonDetritus.jl:49 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 jl_toplevel_eval_flex at /source/src/toplevel.c:1024 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7795ddfe1249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 667365667 (Pool: 667340580; Big: 25087); GC: 132 PkgEval terminated after 2723.36s: test duration exceeded the time limit