Package evaluation to test NumericalEarth on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T07:28:36.474 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.85s ################################################################################ # Installation # Installing NumericalEarth... Resolving package versions... Installed NumericalEarth ─ v0.5.7 Updating `~/.julia/environments/v1.12/Project.toml` [904d977b] + NumericalEarth v0.5.7 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [4fba245c] + ArrayInterface v7.25.0 [a9b6321e] + Atomix v1.1.3 [d1d4a3ce] + BitFlags v0.1.10 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [179af706] + CFTime v0.2.10 [2a0fbf3d] + CPUSummary v0.2.7 [81a5f4ea] + CatViews v1.0.0 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [6ba0ff68] + ClimaSeaIce v0.5.6 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [1fbeeb36] + CommonDataModel v0.4.3 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [7445602f] + CubedSphere v0.3.4 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.14 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [3c3547ce] + DiskArrays v0.4.21 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [21656369] + ExpressionExplorer v1.1.4 [411431e0] + Extents v0.1.6 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.19.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [f6369f11] + ForwardDiff v1.4.1 [46192b85] + GPUArraysCore v0.2.0 [68eda718] + GeoFormatTypes v0.4.5 [cf35fbd7] + GeoInterface v1.6.1 [c27321d9] + Glob v1.5.0 ⌅ [cd3eb016] + HTTP v1.11.0 [076d061b] + HashArrayMappedTries v0.2.0 [3e5b6fbb] + HostCPUFeatures v0.1.18 [615f187c] + IfElse v0.1.1 [a09fc81d] + ImageCore v0.10.5 [787d08f9] + ImageMorphology v0.4.7 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.4 [692b3bcd] + JLLWrappers v1.8.0 [63c18a36] + KernelAbstractions v0.9.41 [ba0b0d4f] + Krylov v0.10.6 [8ac3fa9e] + LRUCache v1.6.2 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v1.0.1 [e6f89c97] + LoggingExtras v1.2.0 [bdcacae8] + LoopVectorization v0.12.174 [da04e1cc] + MPI v0.20.26 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.3 [739be429] + MbedTLS v1.1.10 [cb8c808f] + MeshArrays v0.5.6 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.4 [85f8d34a] + NCDatasets v0.14.15 [77ba4419] + NaNMath v1.1.4 [b8a86587] + NearestNeighbors v0.4.27 [904d977b] + NumericalEarth v0.5.7 [9e8cae18] + Oceananigans v0.110.2 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.1 ⌅ [bac558e1] + OrderedCollections v1.8.2 [5432bcbf] + PaddedViews v0.5.12 [eebad327] + PkgVersion v0.3.3 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [94ee1d12] + Quaternions v0.7.7 [a3311ec8] + ReactantCore v0.1.20 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7181ea78] + RootSolvers v1.0.2 [6038ab10] + Rotations v1.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.46 [431bcebd] + SciMLPublic v1.0.1 [7e506255] + ScopedValues v1.6.2 [6c6a2e73] + Scratch v1.3.0 [d496a93d] + SeawaterPolynomials v0.3.10 [777ac1f9] + SimpleBufferStream v1.2.0 [276daf66] + SpecialFunctions v2.8.0 [cae243ae] + StackViews v0.1.2 [aedffcd0] + Static v1.4.0 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [09ab397b] + StructArrays v0.7.3 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [6aa5eb33] + TaylorSeries v0.20.10 [62fd8b95] + TensorCore v0.1.1 [b60c26fb] + Thermodynamics v1.2.1 [8290d209] + ThreadingUtilities v0.5.6 [06e1c1a7] + TiledIteration v0.5.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.28.0 [013be700] + UnsafeAtomics v0.3.1 [3d5dd08c] + VectorizationBase v0.21.74 [a5390f91] + ZipFile v0.10.1 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [f5851436] + FFTW_jll v3.3.12+0 [0234f1f7] + HDF5_jll v2.1.2+0 [e33a78d0] + Hwloc_jll v2.14.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [856f044c] + MKL_jll v2025.2.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.1000.0+0 [fe0851c0] + OpenMPI_jll v5.0.11+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.3+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 [70f11efc] + aws_c_cal_jll v0.9.13+0 [73048d1d] + aws_c_common_jll v0.12.6+0 [73a04cd5] + aws_c_compression_jll v0.3.2+0 [3254fc65] + aws_c_http_jll v0.10.13+0 [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [477f73a3] + libaec_jll v1.1.7+0 [337d8026] + libzip_jll v1.11.3+0 [9aeb927a] + mpif_jll v0.1.7+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [cddc5d3d] + s2n_tls_jll v1.7.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 14.49s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... ✗ libgeotiff_jll 3964.6 ms ✓ CDSAPI 6200.6 ms ✓ Thermodynamics 26543.8 ms ✓ BitInformation 103666.1 ms ✓ ClimaSeaIce 83652.1 ms ✓ CUDA 34534.9 ms ✓ Enzyme → EnzymeSpecialFunctionsExt 536701.2 ms ✓ Reactant 60637.8 ms ✓ LowerTriangularArrays 25500.6 ms ✓ MeshArrays → MeshArraysGeometryOpsExt 117496.1 ms ✓ ConservativeRegridding → ConservativeRegriddingRingGridsExt 51667.8 ms ✓ ConservativeRegridding → ConservativeRegriddingOceananigansExt ✗ GDAL_jll 366422.3 ms ✓ NumericalEarth 19521.1 ms ✓ CUDA → SpecialFunctionsExt 18963.7 ms ✓ Atomix → AtomixCUDAExt 18700.4 ms ✓ CUDA → ChainRulesCoreExt 19038.1 ms ✓ CUDA → EnzymeCoreExt 18381.4 ms ✓ ArrayInterface → ArrayInterfaceCUDAExt 19377.2 ms ✓ MPI → CUDAExt 69732.7 ms ✓ SpeedyWeatherInternals → SpeedyWeatherInternalsCUDAExt 104972.4 ms ✓ Oceananigans → OceananigansCUDAExt 52677.8 ms ✓ Reactant → ReactantStaticArraysExt 52156.2 ms ✓ Reactant → ReactantStatisticsExt 51130.3 ms ✓ Reactant → ReactantMPIExt 49390.8 ms ✓ Reactant → ReactantRandom123Ext 49737.3 ms ✓ Reactant → ReactantSparseArraysExt 60129.6 ms ✓ Reactant → ReactantKernelAbstractionsExt 54316.0 ms ✓ Reactant → ReactantStructArraysExt 51826.2 ms ✓ Reactant → ReactantFillArraysExt 48908.7 ms ✓ Reactant → ReactantLogExpFunctionsExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 65 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #653 at ./asyncevent.jl:359 jfptr_YY.653_3180.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e51fb889e10 Total snapshots: 381. Utilization: 0% ╎381 @Base/asyncevent.jl:359 (::Base.var"#653#654"{FileWatching.Pidfile.var… ╎ 381 @Base/asyncevent.jl:185 _trywait(t::Timer) ╎ 381 @Base/condition.jl:136 wait ╎ 381 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.S… ╎ 381 @Base/task.jl:1228 wait() 380╎ 381 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronize… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 task_done_hook at ./task.jl:868 jfptr_task_done_hook_43684.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_finish_task at /source/src/task.c:342 start_task at /source/src/task.c:1264 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000072a8e524db40 Total snapshots: 398. Utilization: 0% ╎398 @Base/task.jl:868 task_done_hook(t::Task) ╎ 398 @Base/task.jl:1228 wait() 397╎ 398 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronized{T… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:156 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 15412908 (Pool: 15412174; Big: 734); GC: 12 [65] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #653 at ./asyncevent.jl:359 jfptr_YY.653_3180.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 37826982 (Pool: 37825886; Big: 1096); GC: 32 PkgEval terminated after 2735.48s: test duration exceeded the time limit