Package evaluation to test NMF on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T14:11:49.777 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.12s ################################################################################ # Installation # Installing NMF... Resolving package versions... Installed DataAPI ───────────── v1.16.0 Installed OrderedCollections ── v1.8.2 Installed AliasTables ───────── v1.1.3 Installed StatsAPI ──────────── v1.8.0 Installed LogExpFunctions ───── v1.0.1 Installed DocStringExtensions ─ v0.9.5 Installed RandomizedLinAlg ──── v0.1.0 Installed IrrationalConstants ─ v0.2.6 Installed Missings ──────────── v1.2.0 Installed Statistics ────────── v1.11.1 Installed SortingAlgorithms ─── v1.2.2 Installed StatsBase ─────────── v0.34.12 Installed NonNegLeastSquares ── v0.4.1 Installed PtrArrays ─────────── v1.4.0 Installed NMF ───────────────── v1.0.3 Installed Preferences ───────── v1.5.2 Installed DataStructures ────── v0.19.5 Installed PrecompileTools ───── v1.3.4 Updating `~/.julia/environments/v1.12/Project.toml` [6ef6ca0d] + NMF v1.0.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [ffbed154] + DocStringExtensions v0.9.5 [92d709cd] + IrrationalConstants v0.2.6 [2ab3a3ac] + LogExpFunctions v1.0.1 [e1d29d7a] + Missings v1.2.0 [6ef6ca0d] + NMF v1.0.3 [b7351bd1] + NonNegLeastSquares v0.4.1 ⌅ [bac558e1] + OrderedCollections v1.8.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [0448d7d9] + RandomizedLinAlg v0.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.65s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4589.7 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling package dependencies... Precompiling packages... 1214.4 ms ✓ Statistics 5018.8 ms ✓ IrrationalConstants 814.0 ms ✓ PtrArrays 803.4 ms ✓ DataAPI 844.6 ms ✓ StatsAPI 4090.8 ms ✓ OrderedCollections 1116.1 ms ✓ DocStringExtensions 1839.1 ms ✓ NonNegLeastSquares 1240.9 ms ✓ Preferences 1022.8 ms ✓ RandomizedLinAlg 1362.9 ms ✓ Statistics → SparseArraysExt 1110.5 ms ✓ AliasTables 3790.7 ms ✓ Missings 3480.0 ms ✓ DataStructures 1403.5 ms ✓ LogExpFunctions 1222.8 ms ✓ PrecompileTools 1106.4 ms ✓ SortingAlgorithms 7721.4 ms ✓ StatsBase 33206.6 ms ✓ NMF 19 dependencies successfully precompiled in 72 seconds. 15 already precompiled. 8 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings and TOML). Restart julia to access the new versions. Otherwise, 7 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 88.98s ################################################################################ # Testing # Testing NMF Status `/tmp/jl_1ex4LZ/Project.toml` [6ef6ca0d] NMF v1.0.3 [b7351bd1] NonNegLeastSquares v0.4.1 [aea7be01] PrecompileTools v1.3.4 [0448d7d9] RandomizedLinAlg v0.1.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.12 [37e2e46d] LinearAlgebra v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_1ex4LZ/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [ffbed154] DocStringExtensions v0.9.5 [92d709cd] IrrationalConstants v0.2.6 [2ab3a3ac] LogExpFunctions v1.0.1 [e1d29d7a] Missings v1.2.0 [6ef6ca0d] NMF v1.0.3 [b7351bd1] NonNegLeastSquares v0.4.1 ⌅ [bac558e1] OrderedCollections v1.8.2 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [0448d7d9] RandomizedLinAlg v0.1.0 [a2af1166] SortingAlgorithms v1.2.2 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Running tests: alspgrad: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/alspgrad.jl:13 Expression: ≈(H, Hg, atol = eps(T) ^ (1 / 4)) Evaluated: [0.6850450415284983 0.054484111711896155 … 0.9453474880043192 0.5227221583663471; 0.5368630190304448 0.659725190242179 … 0.9586241745271611 0.8208313287549494; 0.4439829343648287 0.791272516085425 … 0.555105069982795 0.5165773559762138] ≈ [0.3 1.0 … 0.0 0.0; 1.0 0.3 … 0.3 1.0; 0.0 0.0 … 1.0 0.3] (atol=0.0001220703125) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:13 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [4] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:5 alspgrad: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/alspgrad.jl:20 Expression: ≈(W, Wg, atol = eps(T) ^ (1 / 4)) Evaluated: [0.29317173817657227 0.3266750294679397 0.14667832932543123; 0.8483709346718955 0.4462297858644151 0.267214058904903; … ; 0.6503032669362208 0.5357148663246779 0.4585028328295919; 0.8290826201120014 0.6020340466007073 0.4530705108265256] ≈ [0.3 1.0 0.0; 1.0 0.3 0.0; … ; 0.0 0.3 1.0; 0.0 1.0 0.3] (atol=0.0001220703125) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:20 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [4] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:5 alspgrad: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/alspgrad.jl:13 Expression: ≈(H, Hg, atol = eps(T) ^ (1 / 4)) Evaluated: Float32[0.79435104 0.24480498 … 0.4767347 0.75592405; 0.5069507 0.64558756 … 0.71643794 0.8344492; 0.6644829 0.4323452 … 0.14621025 0.29108304] ≈ Float32[0.3 1.0 … 0.0 0.0; 1.0 0.3 … 0.3 1.0; 0.0 0.0 … 1.0 0.3] (atol=0.018581361171917516) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:13 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [4] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:5 alspgrad: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/alspgrad.jl:20 Expression: ≈(W, Wg, atol = eps(T) ^ (1 / 4)) Evaluated: Float32[0.8816566 0.3991933 0.35621327; 0.07708329 0.29413134 0.13914168; … ; 0.9982704 0.7649337 0.23425627; 0.6900723 0.34923148 0.5797918] ≈ Float32[0.3 1.0 0.0; 1.0 0.3 0.0; … ; 0.0 0.3 1.0; 0.0 1.0 0.3] (atol=0.018581361171917516) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:20 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [4] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:5 interf: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/interf.jl:36 Expression: any(W .!= ret.W) Stacktrace: [1] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/interf.jl:2 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [3] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/interf.jl:36 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] interf: Error During Test at /home/pkgeval/.julia/packages/NMF/0XWr8/test/interf.jl:1 Got exception outside of a @test SingularException(2) Stacktrace: [1] checknonsingular @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/factorization.jl:69 [inlined] [2] _check_lu_success @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/lu.jl:84 [inlined] [3] #lu!#180 @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/lu.jl:92 [inlined] [4] lu! @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/lu.jl:90 [inlined] [5] lu! @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/lu.jl:89 [inlined] [6] _lu @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/lu.jl:347 [inlined] [7] lu(::Matrix{Float32}; kwargs::@Kwargs{}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/lu.jl:341 [8] lu @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/lu.jl:341 [inlined] [9] \(A::Matrix{Float32}, B::Vector{Float32}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/generic.jl:1234 [10] fnnls(AtA::Matrix{Float32}, Atb::Vector{Float32}; tol::Float64, max_iter::Int64) @ NonNegLeastSquares ~/.julia/packages/NonNegLeastSquares/DRyA5/src/fnnls.jl:44 [11] fnnls @ ~/.julia/packages/NonNegLeastSquares/DRyA5/src/fnnls.jl:16 [inlined] [12] fnnls(A::Matrix{Float32}, B::Matrix{Float32}; gram::Bool, use_parallel::Bool, kwargs::@Kwargs{}) @ NonNegLeastSquares ~/.julia/packages/NonNegLeastSquares/DRyA5/src/fnnls.jl:107 [13] fnnls @ ~/.julia/packages/NonNegLeastSquares/DRyA5/src/fnnls.jl:79 [inlined] [14] nonneg_lsq(A::Matrix{Float32}, B::Matrix{Float32}; alg::Symbol, variant::Symbol, gram::Bool, kwargs::@Kwargs{}) @ NonNegLeastSquares ~/.julia/packages/NonNegLeastSquares/DRyA5/src/interface.jl:57 [15] nonneg_lsq @ ~/.julia/packages/NonNegLeastSquares/DRyA5/src/interface.jl:28 [inlined] [16] spa(X::Matrix{Float32}, k::Int64; nnls_alg::Tuple{Symbol, Symbol}) @ NMF ~/.julia/packages/NMF/0XWr8/src/spa.jl:64 [17] spa @ ~/.julia/packages/NMF/0XWr8/src/spa.jl:41 [inlined] [18] nnmf(X::Matrix{Float32}, k::Int64; init::Symbol, initdata::Nothing, alg::Symbol, maxiter::Int64, tol::Float32, replicates::Int64, W0::Nothing, H0::Nothing, update_H::Bool, verbose::Bool) @ NMF ~/.julia/packages/NMF/0XWr8/src/interf.jl:51 [19] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/interf.jl:2 [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [21] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/interf.jl:13 [inlined] [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [23] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/runtests.jl:22 [inlined] [24] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [25] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/runtests.jl:20 [26] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [27] top-level scope @ none:6 [28] eval(m::Module, e::Any) @ Core ./boot.jl:489 [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [30] _start() @ Base ./client.jl:550 Test Summary: | Pass Fail Error Total Time All tests | 209 5 1 215 3m32.7s utils | 12 12 9.8s initialization | 46 46 26.2s spa | 12 12 2m08.6s multupd | 80 80 8.3s alspgrad | 4 4 8 9.1s coorddesc | 4 4 2.1s greedycd | 40 40 15.4s interf | 11 1 1 13 9.2s RNG of the outermost testset: Xoshiro(0xb8e9525b717b0483, 0x0b4a5d56ea381fe0, 0x26d4379884e25fb8, 0xe9ea20b48bd4c560, 0x0254654a9b60a85b) ERROR: LoadError: Some tests did not pass: 209 passed, 5 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/NMF/0XWr8/test/runtests.jl:19 Testing failed after 223.1s ERROR: LoadError: Package NMF errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 339.73s: package tests unexpectedly errored