Package evaluation to test MuseInference on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T22:36:01.207


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.12`

Set-up completed after 8.06s


################################################################################
# Installation
#

Installing MuseInference...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [43b88160] + MuseInference v0.2.4
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [47edcb42] + ADTypes v1.22.0
⌅ [c29ec348] + AbstractDifferentiation v0.5.3
  [79e6a3ab] + Adapt v4.6.1
  [66dad0bd] + AliasTables v1.1.3
  [4fba245c] + ArrayInterface v7.25.0
  [d360d2e6] + ChainRulesCore v1.26.1
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.18.1
⌅ [b0b7db55] + ComponentArrays v0.13.15
  [187b0558] + ConstructionBase v1.6.0
  [587fd27a] + CovarianceEstimation v0.2.13
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.5
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.16.0
  [a0c0ee7d] + DifferentiationInterface v0.7.18
  [31c24e10] + Distributions v0.25.127
  [ffbed154] + DocStringExtensions v0.9.5
  [4e289a0a] + EnumX v1.0.7
  [e2ba6199] + ExprTools v0.1.10
  [5789e2e9] + FileIO v1.19.0
  [1a297f60] + FillArrays v1.16.0
  [6a86dc24] + FiniteDiff v2.31.0
  [26cc04aa] + FiniteDifferences v0.12.34
⌅ [f6369f11] + ForwardDiff v0.10.39
⌅ [d9f16b24] + Functors v0.4.12
  [34004b35] + HypergeometricFunctions v0.3.28
  [615f187c] + IfElse v0.1.1
  [92d709cd] + IrrationalConstants v0.2.6
  [42fd0dbc] + IterativeSolvers v0.9.4
  [692b3bcd] + JLLWrappers v1.8.0
⌃ [d3d80556] + LineSearches v7.5.1
  [7a12625a] + LinearMaps v3.11.4
⌅ [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.16
  [e1d29d7a] + Missings v1.2.0
  [43b88160] + MuseInference v0.2.4
⌅ [d41bc354] + NLSolversBase v7.10.0
  [77ba4419] + NaNMath v1.1.4
  [d9ec5142] + NamedTupleTools v0.14.3
⌅ [429524aa] + Optim v1.13.3
⌅ [bac558e1] + OrderedCollections v1.8.2
  [90014a1f] + PDMats v0.11.37
  [85a6dd25] + PositiveFactorizations v0.2.4
  [aea7be01] + PrecompileTools v1.3.4
  [21216c6a] + Preferences v1.5.2
  [92933f4c] + ProgressMeter v1.11.0
  [43287f4e] + PtrArrays v1.4.0
  [1fd47b50] + QuadGK v2.11.3
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [708f8203] + Richardson v1.4.3
  [79098fc4] + Rmath v0.9.0
  [431bcebd] + SciMLPublic v1.0.1
  [efcf1570] + Setfield v1.1.2
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.8.0
  [aedffcd0] + Static v1.4.0
  [0d7ed370] + StaticArrayInterface v1.10.0
  [90137ffa] + StaticArrays v1.9.18
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.12
  [4c63d2b9] + StatsFuns v2.2.0
  [9449cd9e] + TSVD v0.4.4
  [3a884ed6] + UnPack v1.0.2
  [efce3f68] + WoodburyMatrices v1.1.0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.1
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.15.0+0
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.6+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 6.1s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Warning: Could not use exact versions of packages in manifest, re-resolving
└ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78
Precompiling package dependencies...
Precompiling packages...
   2894.8 ms  ✓ Atomix
   4535.5 ms  ✓ StructArrays
  42478.0 ms  ✓ Polynomials
   3603.6 ms  ✓ AbstractDifferentiation
    914.2 ms  ✓ TSVD
   9376.5 ms  ✓ Roots
   5211.4 ms  ✓ Optimisers
   1361.7 ms  ✓ TransmuteDims
   8999.9 ms  ✓ SciMLOperators
   4989.3 ms  ✓ SimplePartitions
  13460.7 ms  ✓ NestedTuples
  13200.8 ms  ✓ MeasureBase
  12728.1 ms  ✓ ComponentArrays
   7633.3 ms  ? ArrayInterfaceStaticArrays
   1123.5 ms  ✓ Measurements → MeasurementsSpecialFunctionsExt
  11726.6 ms  ✓ Interpolations
   5595.8 ms  ✓ MCMCDiagnostics
  42266.5 ms  ✓ AbstractMCMC
   9480.4 ms  ✓ GPUArrays
  15454.7 ms  ✓ Distributions
   8433.2 ms  ✓ TransformVariables
   4775.9 ms  ✓ LogDensityProblemsAD → LogDensityProblemsADForwardDiffExt
   5121.8 ms  ✓ PreallocationTools
   6423.7 ms  ✓ NLSolversBase
  10450.6 ms  ✓ KernelAbstractions
    940.1 ms  ✓ StructArrays → StructArraysAdaptExt
   1453.9 ms  ✓ StructArrays → StructArraysSparseArraysExt
   4467.3 ms  ✓ StructArrays → StructArraysStaticArraysExt
    896.4 ms  ✓ StructArrays → StructArraysGPUArraysCoreExt
   1258.6 ms  ✓ Accessors → StructArraysExt
   1158.6 ms  ✓ BangBang → BangBangStructArraysExt
   3429.1 ms  ✓ Polynomials → PolynomialsRecipesBaseExt
   2935.3 ms  ✓ Polynomials → PolynomialsChainRulesCoreExt
   4602.9 ms  ✓ Polynomials → PolynomialsMutableArithmeticsExt
   6251.7 ms  ✓ SimplePolynomials
   2013.7 ms  ✓ AbstractDifferentiation → AbstractDifferentiationChainRulesCoreExt
   3330.1 ms  ✓ AbstractDifferentiation → AbstractDifferentiationFiniteDifferencesExt
   6704.7 ms  ✓ AbstractDifferentiation → AbstractDifferentiationForwardDiffExt
   5916.5 ms  ✓ CovarianceEstimation
   1394.4 ms  ✓ Roots → RootsChainRulesCoreExt
   4812.9 ms  ✓ Roots → RootsForwardDiffExt
  21199.5 ms  ✓ TensorCast
  46912.9 ms  ✓ SciMLBase
   3044.1 ms  ✓ Interpolations → InterpolationsForwardDiffExt
  14424.8 ms  ✓ AdvancedHMC
   8823.6 ms  ✓ AbstractPPL
   6433.6 ms  ✓ Distributions → DistributionsDensityInterfaceExt
   7489.3 ms  ✓ Distributions → DistributionsTestExt
   9704.7 ms  ✓ Distributions → DistributionsChainRulesCoreExt
   9539.7 ms  ✓ SimpleRandom
   8781.1 ms  ✓ MCMCDiagnosticTools
  35176.5 ms  ✓ LabelledArrays
   9685.5 ms  ✓ LineSearches
   3281.9 ms  ✓ KernelAbstractions → SparseArraysExt
   2781.8 ms  ✓ KernelAbstractions → LinearAlgebraExt
  16548.0 ms  ✓ ChainRules
  14139.8 ms  ✓ TupleVectors
   3467.7 ms  ✓ LinearAlgebraX
  17504.3 ms  ✓ DynamicHMC
   8076.1 ms  ✓ EllipticalSliceSampling
  11061.5 ms  ✓ AdvancedMH
   8894.4 ms  ✓ AdvancedPS
  22792.4 ms  ✓ KernelDensity
 116047.7 ms  ✓ MeasureTheory
  60165.0 ms  ✓ SymbolicUtils
  28130.5 ms  ✓ Optim
  14408.2 ms  ✓ NNlib
  90262.0 ms  ✓ Zygote
  31457.0 ms  ✓ Bijectors
  12455.7 ms  ✓ DistributionsAD
  26096.6 ms  ? SampleChains
  60922.7 ms  ✓ AdvancedMH → AdvancedMHStructArraysExt
   5878.5 ms  ✓ AdvancedMH → AdvancedMHForwardDiffExt
  54498.8 ms  ✓ MCMCChains
 165242.8 ms  ✓ MuseInference
  30030.6 ms  ✓ SimpleGraphs
   3120.2 ms  ✓ NNlib → NNlibSpecialFunctionsExt
  34577.5 ms  ✓ NNlib → NNlibForwardDiffExt
  86118.1 ms  ✓ Zygote → ZygoteColorsExt
   7875.0 ms  ✓ LogDensityProblemsAD → LogDensityProblemsADZygoteExt
   6095.6 ms  ✓ AbstractDifferentiation → AbstractDifferentiationZygoteExt
  81651.8 ms  ✓ Bijectors → BijectorsZygoteExt
   6778.6 ms  ✓ Bijectors → BijectorsForwardDiffExt
   8111.7 ms  ✓ Bijectors → BijectorsLazyArraysExt
  67141.8 ms  ✓ DynamicPPL
  23439.9 ms  ✓ Bijectors → BijectorsDistributionsADExt
  62254.4 ms  ✓ AdvancedHMC → AdvancedHMCMCMCChainsExt
  27032.6 ms  ✓ AdvancedMH → AdvancedMHMCMCChainsExt
  47166.7 ms  ✓ SimplePosets
  57058.6 ms  ✓ Tracker
  10832.0 ms  ✓ DynamicPPL → DynamicPPLMCMCChainsExt
 196124.0 ms  ✓ Soss
   4556.1 ms  ✓ Tracker → TrackerPDMatsExt
   7670.4 ms  ✓ LogDensityProblemsAD → LogDensityProblemsADTrackerExt
   4868.0 ms  ✓ RecursiveArrayTools → RecursiveArrayToolsTrackerExt
   8972.4 ms  ✓ AbstractDifferentiation → AbstractDifferentiationTrackerExt
   8217.5 ms  ✓ Zygote → ZygoteTrackerExt
   9808.9 ms  ✓ Bijectors → BijectorsTrackerExt
  20973.6 ms  ✓ AdvancedVI
  10488.9 ms  ✓ AdvancedVI → AdvancedVIZygoteExt
 119575.7 ms  ✓ Turing

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 7 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
poptask at ./task.jl:1216
wait at ./task.jl:1228
#wait#406 at ./condition.jl:141
wait at ./condition.jl:136 [inlined]
_trywait at ./asyncevent.jl:185
#653 at ./asyncevent.jl:359
jfptr_YY.653_3180.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
start_task at /source/src/task.c:1253
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x000070c2525011e0 Total snapshots: 408. Utilization: 0%
   ╎408 @Base/asyncevent.jl:359  (::Base.var"#653#654"{FileWatching.Pidfile.var…
   ╎ 408 @Base/asyncevent.jl:185  _trywait(t::Timer)
   ╎  408 @Base/condition.jl:136  wait
   ╎   408 @Base/condition.jl:141  wait(c::Base.GenericCondition{Base.Threads.S…
   ╎    408 @Base/task.jl:1228  wait()
407╎     408 @Base/task.jl:1216  poptask(W::Base.IntrusiveLinkedListSynchronize…


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
poptask at ./task.jl:1216
wait at ./task.jl:1228
task_done_hook at ./task.jl:868
jfptr_task_done_hook_43684.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
jl_finish_task at /source/src/task.c:342
start_task at /source/src/task.c:1264
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x000076bc9fd7ed10 Total snapshots: 393. Utilization: 0%
   ╎393 @Base/task.jl:868  task_done_hook(t::Task)
   ╎ 393 @Base/task.jl:1228  wait()
392╎  393 @Base/task.jl:1216  poptask(W::Base.IntrusiveLinkedListSynchronized{T…


[7] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/precompile.jl:34
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
poptask at ./task.jl:1216
wait at ./task.jl:1228
#wait#406 at ./condition.jl:141
wait at ./condition.jl:136 [inlined]
_trywait at ./asyncevent.jl:185
#653 at ./asyncevent.jl:359
jfptr_YY.653_3180.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
start_task at /source/src/task.c:1253
unknown function (ip: (nil)) at (unknown file)
Allocations: 41215535 (Pool: 41214480; Big: 1055); GC: 30

[1] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/evaluate.jl:156
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
poptask at ./task.jl:1216
wait at ./task.jl:1228
#wait#406 at ./condition.jl:141
wait at ./condition.jl:136 [inlined]
_trywait at ./asyncevent.jl:185
profile_printing_listener at ./Base.jl:332
#start_profile_listener##0 at ./Base.jl:352
jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4014 [inlined]
ijl_apply_generic at /source/src/gf.c:4214
jl_apply at /source/src/julia.h:2397 [inlined]
start_task at /source/src/task.c:1253
unknown function (ip: (nil)) at (unknown file)
Allocations: 15127210 (Pool: 15126558; Big: 652); GC: 12

PkgEval terminated after 2753.91s: test duration exceeded the time limit