Package evaluation to test MolecularGraph on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T16:34:21.742 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.25s ################################################################################ # Installation # Installing MolecularGraph... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [6c89ec66] + MolecularGraph v0.22.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [ec485272] + ArnoldiMethod v0.4.0 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [864edb3b] + DataStructures v0.19.5 [8bb1440f] + DelimitedFiles v1.9.1 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [5c1252a2] + GeometryBasics v0.5.11 [86223c79] + Graphs v1.14.0 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.14 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 [1914dd2f] + MacroTools v0.5.16 [20f20a25] + MakieCore v0.10.0 [6c89ec66] + MolecularGraph v0.22.0 [510215fc] + Observables v0.5.5 ⌅ [bac558e1] + OrderedCollections v1.8.2 [69de0a69] + Parsers v2.8.6 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [189a3867] + Reexport v1.2.2 [699a6c99] + SimpleTraits v0.9.6 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [ec057cc2] + StructUtils v2.8.2 [ddb6d928] + YAML v0.4.16 [5ae413db] + EarCut_jll v2.2.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [f6050b86] + coordgenlibs_jll v3.0.2+0 [172afb32] + libinchi_jll v1.6.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 1296.2 ms ✓ coordgenlibs_jll 1295.8 ms ✓ libinchi_jll 51905.7 ms ✓ MolecularGraph 3 dependencies successfully precompiled in 56 seconds. 68 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 25 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 74.16s ################################################################################ # Testing # Testing MolecularGraph Status `/tmp/jl_QxzWmt/Project.toml` [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [5c1252a2] GeometryBasics v0.5.11 [86223c79] Graphs v1.14.0 [682c06a0] JSON v1.6.1 [20f20a25] MakieCore v0.10.0 [6c89ec66] MolecularGraph v0.22.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [10745b16] Statistics v1.11.1 [ec057cc2] StructUtils v2.8.2 [ddb6d928] YAML v0.4.16 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_QxzWmt/Manifest.toml` [ec485272] ArnoldiMethod v0.4.0 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [864edb3b] DataStructures v0.19.5 [8bb1440f] DelimitedFiles v1.9.1 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [5c1252a2] GeometryBasics v0.5.11 [86223c79] Graphs v1.14.0 [d25df0c9] Inflate v0.1.5 [8197267c] IntervalSets v0.7.14 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [1914dd2f] MacroTools v0.5.16 [20f20a25] MakieCore v0.10.0 [6c89ec66] MolecularGraph v0.22.0 [510215fc] Observables v0.5.5 ⌅ [bac558e1] OrderedCollections v1.8.2 [69de0a69] Parsers v2.8.6 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [189a3867] Reexport v1.2.2 [699a6c99] SimpleTraits v0.9.6 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [ec057cc2] StructUtils v2.8.2 [ddb6d928] YAML v0.4.16 [5ae413db] EarCut_jll v2.2.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time util.geometry | 26 26 4.3s Test Summary: | Pass Total Time util.iterator | 22 22 3.0s Test Summary: | Pass Total Time util.math | 4 4 0.1s Test Summary: | Pass Total Time operator | 20 20 3.5s Test Summary: | Pass Total Time cycle | 8 8 6.8s Test Summary: | Pass Total Time bipartite | 4 4 2.7s Test Summary: | Pass Total Time matching | 12 12 8.9s Test Summary: | Pass Total Time graph.planarity | 42 42 12.4s max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:10 Test threw exception Expression: (maximum_clique(nullg))[1] == [] UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:10 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:14 Test threw exception Expression: length((maximum_clique(noedges))[1]) == 1 UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:14 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:18 Test threw exception Expression: length((maximum_clique(p7))[1]) == 2 UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:18 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:22 Test threw exception Expression: length((maximum_clique(k5))[1]) == 5 UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:22 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:26 Test threw exception Expression: length((maximum_clique(w8))[1]) == 3 UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:26 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:30 Test threw exception Expression: length((maximum_clique(petersen))[1]) == 2 UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:30 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] max_clique: Error During Test at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:34 Test threw exception Expression: length((maximum_clique(karate))[1]) == 5 UndefVarError: `maximum_clique` not defined in `Main.MolecularGraphTest` Hint: It looks like two or more modules export different bindings with this name, resulting in ambiguity. Try explicitly importing it from a particular module, or qualifying the name with the module it should come from. Hint: a global variable of this name also exists in Graphs. Hint: a global variable of this name also exists in MolecularGraph. Stacktrace: [1] top-level scope @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:8 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [3] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:9 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [5] macro expansion @ ~/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:34 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] Test Summary: | Pass Error Total Time clique | 15 7 22 9.7s max_clique | 6 7 13 5.7s max_conn_clique | 9 9 4.0s RNG of the outermost testset: Random.Xoshiro(0x797fe7081b93ad21, 0x344a659abb2ea3d3, 0x3aab5eddd32818e0, 0x3e6243948a83bb44, 0xf067cb3d368233d6) ERROR: LoadError: Some tests did not pass: 15 passed, 0 failed, 7 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/graph/clique.jl:6 in expression starting at /home/pkgeval/.julia/packages/MolecularGraph/isHa9/test/runtests.jl:6 Testing failed after 79.05s ERROR: LoadError: Package MolecularGraph errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 189.31s: package tests unexpectedly errored