Package evaluation to test Mice on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T18:48:23.669 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.79s ################################################################################ # Installation # Installing Mice... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [d4678d24] + Mice v0.4.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [39de3d68] + AxisArrays v0.4.8 [324d7699] + CategoricalArrays v1.1.1 [34da2185] + Compat v4.18.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [34004b35] + HypergeometricFunctions v0.3.28 [8197267c] + IntervalSets v0.7.14 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [d4678d24] + Mice v0.4.1 [e1d29d7a] + Missings v1.2.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [b3c3ace0] + RangeArrays v0.3.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [3eaba693] + StatsModels v0.7.10 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.19s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 97237.7 ms ✓ BSplineKit 93621.4 ms ✓ Mice 289622.9 ms ✓ BetaML 170291.6 ms ✓ MixedModels 152426.5 ms ✓ Mice → MiceDataFramesExt 105096.3 ms ? Mice → MiceBetaMLExt 173001.0 ms ✓ MixedModels → MixedModelsForwardDiffExt 409504.3 ms ✓ Mice → MiceMixedModelsExt 7 dependencies successfully precompiled in 1497 seconds. 237 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 126 dependents of these packages may trigger further precompilation to work with the unexpected versions. 1 dependencies failed but may be precompilable after restarting julia 4 dependencies had output during precompilation: ┌ Mice → MiceBetaMLExt │ WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ Mice → MiceMixedModelsExt │ ┌ Warning: Mice versions prior to v0.4.1 may produce incorrect results. │ │ Recompute outputs where necessary. │ └ @ Mice ~/.julia/packages/Mice/41x4x/src/Mice.jl:3 └ ┌ BetaML │ [ Info: Beginning BetaML PrecompileTool workflow.... │ [ Info: ...done BetaML PrecompileTool workflow. └ ┌ Mice → MiceDataFramesExt │ ┌ Warning: Mice versions prior to v0.4.1 may produce incorrect results. │ │ Recompute outputs where necessary. │ └ @ Mice ~/.julia/packages/Mice/41x4x/src/Mice.jl:3 └ Precompilation completed after 1519.03s ################################################################################ # Testing # Testing Mice Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_TrOwAm/Project.toml` ⌃ [024491cd] + BetaML v0.12.6 [336ed68f] + CSV v0.10.16 [a93c6f00] + DataFrames v1.8.2 [38e38edf] + GLM v1.9.5 ⌃ [ff71e718] + MixedModels v4.38.1 [9d95f2ec] + TypedTables v1.4.6 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_TrOwAm/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.6.1 [4fba245c] + ArrayInterface v7.25.0 [4c555306] + ArrayLayouts v1.12.2 [69666777] + Arrow v2.8.1 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.2 [aae01518] + BandedMatrices v1.11.0 ⌃ [024491cd] + BetaML v0.12.6 [c3b6d118] + BitIntegers v0.3.7 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.16 [082447d4] + ChainRules v1.73.0 [d360d2e6] + ChainRulesCore v1.26.1 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [5ba52731] + CodecLz4 v0.4.6 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a93c6f00] + DataFrames v1.8.2 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.6 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [4e289a0a] + EnumX v1.0.7 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.3.0 [5789e2e9] + FileIO v1.19.0 [48062228] + FilePathsBase v0.9.24 [9dda63f9] + ForceImport v0.0.3 [f6369f11] + ForwardDiff v1.4.1 [38e38edf] + GLM v1.9.5 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [3e5b6fbb] + HostCPUFeatures v0.1.18 [7869d1d1] + IRTools v0.4.17 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [033835bb] + JLD2 v0.6.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 ⌅ [2ab3a3ac] ↓ LogExpFunctions v1.0.1 ⇒ v0.3.29 [bdcacae8] + LoopVectorization v0.12.174 [e80e1ace] + MLJModelInterface v1.12.1 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 ⌃ [ff71e718] + MixedModels v4.38.1 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.4 [6fe1bfb0] + OffsetArrays v1.17.0 [69de0a69] + Parsers v2.8.6 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [c1ae055f] + RealDot v0.1.0 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.46 [431bcebd] + SciMLPublic v1.0.1 [30f210dd] + ScientificTypesBase v3.1.0 [7e506255] + ScopedValues v1.6.2 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.10 [dc90abb0] + SparseInverseSubset v0.1.2 [03a91e81] + SplitApplyCombine v1.3.0 [860ef19b] + StableRNGs v1.0.4 [aedffcd0] + Static v1.4.0 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [64bff920] + StatisticalTraits v3.5.0 ⌅ [4c63d2b9] ↓ StatsFuns v2.2.0 ⇒ v1.5.2 [892a3eda] + StringManipulation v0.4.4 ⌅ [354b36f9] + StringViews v1.3.7 [09ab397b] + StructArrays v0.7.3 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [8290d209] + ThreadingUtilities v0.5.6 [f269a46b] + TimeZones v1.22.2 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [3a884ed6] + UnPack v1.0.2 [3d5dd08c] + VectorizationBase v0.21.74 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [e88e6eb3] + Zygote v0.7.11 [700de1a5] + ZygoteRules v0.2.7 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.11.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [56ddb016] + Logging v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.6+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_TrOwAm/Project.toml` ⌃ [024491cd] BetaML v0.12.6 [336ed68f] CSV v0.10.16 [324d7699] CategoricalArrays v1.1.1 [a93c6f00] DataFrames v1.8.2 [38e38edf] GLM v1.9.5 [d4678d24] Mice v0.4.1 ⌃ [ff71e718] MixedModels v4.38.1 [bd369af6] Tables v1.12.1 [9d95f2ec] TypedTables v1.4.6 [8dfed614] Test v1.11.0 Status `/tmp/jl_TrOwAm/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.25.0 [4c555306] ArrayLayouts v1.12.2 [69666777] Arrow v2.8.1 [31f734f8] ArrowTypes v2.3.0 [39de3d68] AxisArrays v0.4.8 [093aae92] BSplineKit v0.19.2 [aae01518] BandedMatrices v1.11.0 ⌃ [024491cd] BetaML v0.12.6 [c3b6d118] BitIntegers v0.3.7 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.16 [324d7699] CategoricalArrays v1.1.1 [082447d4] ChainRules v1.73.0 [d360d2e6] ChainRulesCore v1.26.1 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.1 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [85a47980] Dictionaries v0.4.6 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [e2ba6199] ExprTools v0.1.10 [442a2c76] FastGaussQuadrature v1.3.0 [5789e2e9] FileIO v1.19.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [9dda63f9] ForceImport v0.0.3 [f6369f11] ForwardDiff v1.4.1 [38e38edf] GLM v1.9.5 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [3e5b6fbb] HostCPUFeatures v0.1.18 [34004b35] HypergeometricFunctions v0.3.28 [7869d1d1] IRTools v0.4.17 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.14 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.4 [692b3bcd] JLLWrappers v1.8.0 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.174 [e80e1ace] MLJModelInterface v1.12.1 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [d4678d24] Mice v0.4.1 [e1d29d7a] Missings v1.2.0 ⌃ [ff71e718] MixedModels v4.38.1 [7e9fb7ac] MixedModelsDatasets v0.1.2 [78c3b35d] Mocking v0.8.1 [76087f3c] NLopt v1.2.1 [77ba4419] NaNMath v1.1.4 [6fe1bfb0] OffsetArrays v1.17.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.6 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [b3c3ace0] RangeArrays v0.3.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.46 [431bcebd] SciMLPublic v1.0.1 [30f210dd] ScientificTypesBase v3.1.0 [7e506255] ScopedValues v1.6.2 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.10 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.8.0 [03a91e81] SplitApplyCombine v1.3.0 [860ef19b] StableRNGs v1.0.4 [aedffcd0] Static v1.4.0 [0d7ed370] StaticArrayInterface v1.10.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 ⌅ [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.10 [892a3eda] StringManipulation v0.4.4 ⌅ [354b36f9] StringViews v1.3.7 [09ab397b] StructArrays v0.7.3 [856f2bd8] StructTypes v1.11.0 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [8290d209] ThreadingUtilities v0.5.6 [f269a46b] TimeZones v1.22.2 [3bb67fe8] TranscodingStreams v0.11.3 [9d95f2ec] TypedTables v1.4.6 [3a884ed6] UnPack v1.0.2 [3d5dd08c] VectorizationBase v0.21.74 [ea10d353] WeakRefStrings v1.4.3 [76eceee3] WorkerUtilities v1.6.1 [e88e6eb3] Zygote v0.7.11 [700de1a5] ZygoteRules v0.2.7 [5ced341a] Lz4_jll v1.10.1+0 [079eb43e] NLopt_jll v2.11.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... Info Given BetaML was explicitly requested, output will be shown live  [ Info: Beginning BetaML PrecompileTool workflow.... [ Info: ...done BetaML PrecompileTool workflow. 320276.8 ms ✓ BetaML 1 dependency successfully precompiled in 325 seconds. 168 already precompiled. 1 dependency had output during precompilation: ┌ BetaML │ [Output was shown above] └ Precompiling packages... 6141.5 ms ✓ WeakRefStrings 27827.1 ms ✓ CSV 2 dependencies successfully precompiled in 35 seconds. 28 already precompiled. 17 dependencies precompiled but different versions are currently loaded (Compat, Compat → CompatLinearAlgebraExt, DataAPI, DataValueInterfaces, Dates, IteratorInterfaceExtensions, Mmap, OrderedCollections, PrecompileTools, Preferences, Printf, TOML, TableTraits, Tables, UUIDs, Unicode and Zlib_jll). Restart julia to access the new versions. Otherwise, 9 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1271.4 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 1 dependency successfully precompiled in 1 seconds. 14 already precompiled. 14 dependencies precompiled but different versions are currently loaded (CategoricalArrays, Compat, Compat → CompatLinearAlgebraExt, DataAPI, Dates, Future, Missings, Printf, Requires, SentinelArrays, Statistics, TOML, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 47733.2 ms ✓ PrettyTables 92251.0 ms ✓ DataFrames 2 dependencies successfully precompiled in 141 seconds. 34 already precompiled. 30 dependencies precompiled but different versions are currently loaded (Base64, Compat, Compat → CompatLinearAlgebraExt, DataAPI, DataStructures, DataValueInterfaces, Dates, Future, InlineStrings, InteractiveUtils, IteratorInterfaceExtensions, JuliaSyntaxHighlighting, Markdown, Missings, OrderedCollections, PooledArrays, PrecompileTools, Preferences, Printf, REPL, Reexport, SentinelArrays, SortingAlgorithms, Statistics, StyledStrings, TOML, TableTraits, Tables, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 5492.7 ms ✓ StatsModels 6582.3 ms ✓ GLM 2 dependencies successfully precompiled in 14 seconds. 52 already precompiled. 51 dependencies precompiled but different versions are currently loaded (AliasTables, Base64, CompilerSupportLibraries_jll, DataAPI, DataStructures, DataValueInterfaces, Dates, Distributions, DocStringExtensions, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, HypergeometricFunctions, InteractiveUtils, IrrationalConstants, IteratorInterfaceExtensions, JLLWrappers, JuliaSyntaxHighlighting, LogExpFunctions, Markdown, Missings, OpenLibm_jll, OpenSpecFun_jll, OrderedCollections, PDMats, PDMats → StatsBaseExt, Preferences, Printf, PtrArrays, QuadGK, REPL, Reexport, Rmath, Rmath_jll, Serialization, SortingAlgorithms, SparseArrays, SpecialFunctions, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, TableTraits, Tables and Unicode). Restart julia to access the new versions. Otherwise, 2 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 4560.0 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 79251.7 ms ✓ Mice 2 dependencies successfully precompiled in 85 seconds. 69 already precompiled. 61 dependencies precompiled but different versions are currently loaded (AliasTables, Base64, CategoricalArrays, CategoricalArrays → CategoricalArraysStatsBaseExt, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, DataAPI, DataStructures, DataValueInterfaces, Dates, Distributions, DocStringExtensions, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, Future, HypergeometricFunctions, InteractiveUtils, IrrationalConstants, IteratorInterfaceExtensions, JLLWrappers, JuliaSyntaxHighlighting, LogExpFunctions, Markdown, Missings, OpenLibm_jll, OpenSpecFun_jll, OrderedCollections, PDMats, PDMats → StatsBaseExt, PrecompileTools, Preferences, Printf, PtrArrays, QuadGK, REPL, Reexport, Requires, Rmath, Rmath_jll, Serialization, ShiftedArrays, SortingAlgorithms, SparseArrays, SpecialFunctions, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StatsModels, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, TableTraits, Tables, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 6 dependents of these packages may trigger further precompilation to work with the unexpected versions. ┌ Warning: Mice versions prior to v0.4.1 may produce incorrect results. │ Recompute outputs where necessary. └ @ Mice ~/.julia/packages/Mice/41x4x/src/Mice.jl:3 Precompiling packages... 5368.9 ms ✓ Distributions → DistributionsTestExt Info Given MiceBetaMLExt was explicitly requested, output will be shown live  ┌ Warning: Mice versions prior to v0.4.1 may produce incorrect results. │ Recompute outputs where necessary. └ @ Mice ~/.julia/packages/Mice/41x4x/src/Mice.jl:3 67146.6 ms ✓ Mice → MiceBetaMLExt 2 dependencies successfully precompiled in 75 seconds. 181 already precompiled. 177 dependencies precompiled but different versions are currently loaded (AbstractFFTs, AbstractFFTs → AbstractFFTsChainRulesCoreExt, AbstractTrees, Adapt, Adapt → AdaptSparseArraysExt, Adapt → AdaptStaticArraysExt, AliasTables, ArgTools, ArrayInterface, ArrayInterface → ArrayInterfaceChainRulesCoreExt, ArrayInterface → ArrayInterfaceChainRulesExt, ArrayInterface → ArrayInterfaceGPUArraysCoreExt, ArrayInterface → ArrayInterfaceSparseArraysExt, ArrayInterface → ArrayInterfaceStaticArraysCoreExt, AxisArrays, Base64, BetaML, BitTwiddlingConvenienceFunctions, CPUSummary, CategoricalArrays, CategoricalArrays → CategoricalArraysRecipesBaseExt, CategoricalArrays → CategoricalArraysStatsBaseExt, ChainRules, ChainRulesCore, ChainRulesCore → ChainRulesCoreSparseArraysExt, ChunkCodecCore, ChunkCodecLibZlib, ChunkCodecLibZstd, CloseOpenIntervals, Combinatorics, CommonSubexpressions, CommonWorldInvalidations, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, ConstructionBase, ConstructionBase → ConstructionBaseIntervalSetsExt, ConstructionBase → ConstructionBaseLinearAlgebraExt, ConstructionBase → ConstructionBaseStaticArraysExt, CpuId, DataAPI, DataStructures, DataValueInterfaces, Dates, DiffResults, DiffRules, Distributed, Distributions, Distributions → DistributionsChainRulesCoreExt, DocStringExtensions, Downloads, FileIO, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStaticArraysExt, FillArrays → FillArraysStatisticsExt, ForceImport, ForwardDiff, ForwardDiff → ForwardDiffStaticArraysExt, Future, GPUArraysCore, HostCPUFeatures, HypergeometricFunctions, IRTools, IfElse, InteractiveUtils, IntervalSets, IntervalSets → IntervalSetsRandomExt, IntervalSets → IntervalSetsRecipesBaseExt, IntervalSets → IntervalSetsStatisticsExt, IrrationalConstants, IterTools, IteratorInterfaceExtensions, JLD2, JLD2 → UnPackExt, JLLWrappers, JuliaSyntaxHighlighting, LayoutPointers, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, LogExpFunctions, LogExpFunctions → LogExpFunctionsChainRulesCoreExt, Logging, LoopVectorization, LoopVectorization → ForwardDiffExt, LoopVectorization → SpecialFunctionsExt, MLJModelInterface, MacroTools, ManualMemory, Markdown, Mice, Missings, Mmap, MozillaCACerts_jll, NaNMath, NetworkOptions, OffsetArrays, OffsetArrays → OffsetArraysAdaptExt, OpenLibm_jll, OpenSSL_jll, OpenSpecFun_jll, OrderedCollections, PDMats, PDMats → StatsBaseExt, Pkg, Pkg → REPLExt, PolyesterWeave, PrecompileTools, Preferences, Printf, ProgressMeter, PtrArrays, QuadGK, REPL, RangeArrays, RealDot, RecipesBase, Reexport, Requires, Rmath, Rmath_jll, SIMDTypes, SLEEFPirates, SciMLPublic, ScientificTypesBase, ScopedValues, Serialization, ShiftedArrays, SortingAlgorithms, SparseArrays, SparseInverseSubset, SpecialFunctions, SpecialFunctions → SpecialFunctionsChainRulesCoreExt, StableRNGs, Static, StaticArrayInterface, StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt, StaticArrayInterface → StaticArrayInterfaceStaticArraysExt, StaticArrays, StaticArrays → StaticArraysChainRulesCoreExt, StaticArrays → StaticArraysStatisticsExt, StaticArraysCore, StatisticalTraits, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StatsFuns → StatsFunsChainRulesCoreExt, StatsModels, StructArrays, StructArrays → StructArraysAdaptExt, StructArrays → StructArraysLinearAlgebraExt, StructArrays → StructArraysSparseArraysExt, StructArrays → StructArraysStaticArraysExt, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, TableTraits, Tables, Tar, ThreadingUtilities, UUIDs, UnPack, Unicode, VectorizationBase, Zlib_jll, Zstd_jll, Zygote, ZygoteRules, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 5 dependents of these packages may trigger further precompilation to work with the unexpected versions. 1 dependency had output during precompilation: ┌ Mice → MiceBetaMLExt │ [Output was shown above] └ Precompiling packages... Info Given MiceDataFramesExt was explicitly requested, output will be shown live  ┌ Warning: Mice versions prior to v0.4.1 may produce incorrect results. │ Recompute outputs where necessary. └ @ Mice ~/.julia/packages/Mice/41x4x/src/Mice.jl:3 61053.9 ms ✓ Mice → MiceDataFramesExt 1 dependency successfully precompiled in 63 seconds. 81 already precompiled. 81 dependencies precompiled but different versions are currently loaded (AliasTables, AxisArrays, Base64, CategoricalArrays, CategoricalArrays → CategoricalArraysRecipesBaseExt, CategoricalArrays → CategoricalArraysSentinelArraysExt, CategoricalArrays → CategoricalArraysStatsBaseExt, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, Crayons, DataAPI, DataFrames, DataStructures, DataValueInterfaces, Dates, Distributions, DocStringExtensions, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, Future, HypergeometricFunctions, InlineStrings, InteractiveUtils, IntervalSets, IntervalSets → IntervalSetsRandomExt, IntervalSets → IntervalSetsRecipesBaseExt, IntervalSets → IntervalSetsStatisticsExt, InvertedIndices, IrrationalConstants, IterTools, IteratorInterfaceExtensions, JLLWrappers, JuliaSyntaxHighlighting, LaTeXStrings, LogExpFunctions, Markdown, Mice, Missings, OpenLibm_jll, OpenSpecFun_jll, OrderedCollections, PDMats, PDMats → StatsBaseExt, PooledArrays, PrecompileTools, Preferences, PrettyTables, Printf, PtrArrays, QuadGK, REPL, RangeArrays, RecipesBase, Reexport, Requires, Rmath, Rmath_jll, SentinelArrays, Serialization, ShiftedArrays, SortingAlgorithms, SparseArrays, SpecialFunctions, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StatsModels, StringManipulation, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, TableTraits, Tables, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. 1 dependency had output during precompilation: ┌ Mice → MiceDataFramesExt │ [Output was shown above] └ Precompiling packages... 17084.0 ms ✓ Arrow 4543.9 ms ✓ FastGaussQuadrature 24827.7 ms ✓ ArrayLayouts 10352.2 ms ✓ MixedModelsDatasets 3625.1 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 30304.8 ms ✓ BandedMatrices 4838.5 ms ✓ BandedMatrices → BandedMatricesSparseArraysExt 26190.2 ms ✓ BSplineKit Info Given MixedModels was explicitly requested, output will be shown live  ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = glm(::Matrix{Float64}, ::Vector{Float64}, ::Distributions.Bernoulli{Float64}, ::Vararg{Any}; kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{wts::Vector{Float64}, dofit::Bool, offset::Vector{Float64}}}) at glmfit.jl:618 └ @ Core ~/.julia/packages/GLM/US8qj/src/glmfit.jl:618 149747.7 ms ✓ MixedModels 32128.5 ms ✓ MixedModels → MixedModelsForwardDiffExt 10 dependencies successfully precompiled in 306 seconds. 129 already precompiled. 104 dependencies precompiled but different versions are currently loaded (Adapt, Adapt → AdaptSparseArraysExt, Adapt → AdaptStaticArraysExt, AliasTables, ArgTools, Base64, CommonSubexpressions, CommonWorldInvalidations, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, DataAPI, DataStructures, DataValueInterfaces, Dates, DiffResults, DiffRules, Distributed, Distributions, DocStringExtensions, Downloads, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStaticArraysExt, FillArrays → FillArraysStatisticsExt, ForwardDiff, ForwardDiff → ForwardDiffStaticArraysExt, Future, GLM, HypergeometricFunctions, IfElse, InlineStrings, InlineStrings → ParsersExt, InteractiveUtils, IrrationalConstants, IteratorInterfaceExtensions, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, LogExpFunctions, Logging, MacroTools, Markdown, Missings, Mmap, MozillaCACerts_jll, NaNMath, NetworkOptions, OpenLibm_jll, OpenSSL_jll, OpenSpecFun_jll, OrderedCollections, PDMats, PDMats → StatsBaseExt, Parsers, Pkg, Pkg → REPLExt, PooledArrays, PrecompileTools, Preferences, Printf, ProgressMeter, PtrArrays, QuadGK, REPL, Reexport, Rmath, Rmath_jll, SciMLPublic, SentinelArrays, Serialization, ShiftedArrays, SortingAlgorithms, SparseArrays, SpecialFunctions, Static, StaticArrays, StaticArrays → StaticArraysStatisticsExt, StaticArraysCore, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StatsModels, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, TableTraits, Tables, Tar, TranscodingStreams, UUIDs, Unicode, Zlib_jll, Zstd_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 28 dependents of these packages may trigger further precompilation to work with the unexpected versions. 1 dependency had output during precompilation: ┌ MixedModels │ [Output was shown above] └ Precompiling packages... 6515.5 ms ✓ CategoricalArrays → CategoricalArraysArrowExt 1 dependency successfully precompiled in 7 seconds. 55 already precompiled. 55 dependencies precompiled but different versions are currently loaded (ArgTools, Arrow, ArrowTypes, BitIntegers, CategoricalArrays, CategoricalArrays → CategoricalArraysSentinelArraysExt, CodecLz4, CodecZstd, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, ConcurrentUtilities, DataAPI, DataValueInterfaces, Dates, Downloads, EnumX, ExprTools, Future, InlineStrings, InlineStrings → ArrowTypesExt, IteratorInterfaceExtensions, JLLWrappers, LibCURL, LibCURL_jll, LibSSH2_jll, Lz4_jll, Missings, Mmap, Mocking, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, OrderedCollections, PooledArrays, Preferences, Printf, Requires, Scratch, SentinelArrays, Serialization, Statistics, StringViews, TOML, TZJData, TableTraits, Tables, TimeZones, TranscodingStreams, UUIDs, Unicode, Zlib_jll, Zstd_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 4054.3 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 1 dependency successfully precompiled in 4 seconds. 16 already precompiled. 16 dependencies precompiled but different versions are currently loaded (Adapt, Adapt → AdaptStaticArraysExt, ArrayInterface, ArrayInterface → ArrayInterfaceStaticArraysCoreExt, ArrayLayouts, BandedMatrices, Dates, FillArrays, FillArrays → FillArraysStaticArraysExt, PrecompileTools, Preferences, Printf, StaticArrays, StaticArraysCore, TOML and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... ✗ CategoricalArrays → CategoricalArraysStructTypesExt 0 dependencies successfully precompiled in 0 seconds. 14 already precompiled. 14 dependencies precompiled but different versions are currently loaded (CategoricalArrays, Compat, Compat → CompatLinearAlgebraExt, DataAPI, Dates, Future, Missings, Printf, Requires, Statistics, StructTypes, TOML, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. ┌ Error: Error during loading of extension CategoricalArraysStructTypesExt of CategoricalArrays, use `Base.retry_load_extensions()` to retry. │ exception = │ 1-element ExceptionStack: │ The following 1 direct dependency failed to precompile: │ │ CategoricalArrays → CategoricalArraysStructTypesExt │ │ Failed to precompile CategoricalArraysStructTypesExt [e0b1e8f7-f9d4-55ed-aa4c-3cb4a66b5cfe] to "/home/pkgeval/.julia/compiled/v1.12/CategoricalArraysStructTypesExt/jl_LHHNq3". └ @ Base loading.jl:1619 Precompiling packages... 1336.0 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 275 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 [inlined] success at ./process.jl:555 jfptr_success_6905.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #compilecache#914 at ./loading.jl:3236 compilecache at ./loading.jl:3192 [inlined] #_precompilepkgs##36 at ./precompilation.jl:1075 with_logstate at ./logging/logging.jl:542 with_logger at ./logging/logging.jl:653 [inlined] #_precompilepkgs##34 at ./precompilation.jl:1069 [inlined] #mkpidlock#8 at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 unknown function (ip: 0x7418ecadd17d) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mkpidlock at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 #mkpidlock#7 at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] mkpidlock at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 jfptr_mkpidlock_68876.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 #trymkpidlock#13 at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 trymkpidlock at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:115 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:900 #invokelatest_gr#239 at ./reflection.jl:1297 [inlined] invokelatest_gr at ./reflection.jl:1289 [inlined] precompile_pkgs_maybe_cachefile_lock at ./precompilation.jl:1310 macro expansion at ./timing.jl:461 [inlined] #_precompilepkgs##30 at ./precompilation.jl:1068 jfptr_YY._precompilepkgsYY.YY.30_3976.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_70429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x70382197c2c3) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x70382196f11c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x70382196b9b1) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x70382196af11) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x703821969050) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x70382196025f) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x70383c2b8249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007038219fc010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:550 _start() ╎ 1 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 1 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 1 @Pkg/src/API.jl:157 test ╎ ╎ 1 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.Pairs… ╎ ╎ 1 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOConte… ╎ ╎ ╎ 1 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 @Pkg/…Operations.jl:2387 test ╎ ╎ ╎ 1 @Pkg/…perations.jl:2481 test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2215 kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 1 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 1 @Base/file.jl:932 mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var"#18… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:2278 (::Pkg.Operations.var"#186#187"… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:2164 with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ations.jl:2311 (::Pkg.Operations.var"#190#191… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265 withenv(::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2496 (::Pkg.Operations.var"#205#20… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2556 subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:693 wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:141 wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1228 wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1216 poptask(W::Base.Intrusiv… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 27534569 (Pool: 27533899; Big: 670); GC: 27 [275] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Mice/41x4x/test/runtests.jl:1 _ZN4llvm17JumpThreadingPass25tryToUnfoldSelectInCurrBBEPNS_10BasicBlockE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm17JumpThreadingPass12processBlockEPNS_10BasicBlockE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm17JumpThreadingPass7runImplERNS_8FunctionEPNS_15AnalysisManagerIS1_JEEEPNS_17TargetLibraryInfoEPNS_19TargetTransformInfoEPNS_13LazyValueInfoEPNS_9AAResultsESt10unique_ptrINS_14DomTreeUpdaterESt14default_deleteISF_EESt8optionalIPNS_18BlockFrequencyInfoEESJ_IPNS_21BranchProbabilityInfoEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm17JumpThreadingPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:543 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/src/pipeline.cpp:741 operator() at /source/src/jitlayers.cpp:1459 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1420 [inlined] operator() at /source/src/jitlayers.cpp:1572 [inlined] addModule at /source/src/jitlayers.cpp:2031 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824 jl_compile_method_internal at /source/src/gf.c:3528 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_f_invokelatest at /source/src/builtins.c:881 profile_printing_listener at ./Base.jl:334 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 38873729 (Pool: 38872420; Big: 1309); GC: 62 PkgEval terminated after 2736.23s: test duration exceeded the time limit