Package evaluation to test MLJNonnegativeMatrixFactorization on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T00:55:15.444 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.54s ################################################################################ # Installation # Installing MLJNonnegativeMatrixFactorization... Resolving package versions... Installed GPUArraysCore ───────────────────── v0.2.0 Installed MLCore ──────────────────────────── v1.0.2 Installed Crayons ─────────────────────────── v4.1.1 Installed Calculus ────────────────────────── v0.5.2 Installed Adapt ───────────────────────────── v4.6.1 Installed ScientificTypesBase ─────────────── v3.1.0 Installed IrrationalConstants ─────────────── v0.2.6 Installed ColorTypes ──────────────────────── v0.12.1 Installed CategoricalDistributions ────────── v0.2.2 Installed StatisticalMeasuresBase ─────────── v0.1.4 Installed ShowCases ───────────────────────── v0.1.0 Installed MLJModelInterface ───────────────── v1.12.1 Installed Rmath ───────────────────────────── v0.9.0 Installed HypergeometricFunctions ─────────── v0.3.28 Installed Arpack_jll ──────────────────────── v3.5.2+0 Installed StatsFuns ───────────────────────── v2.2.0 Installed TableTraits ─────────────────────── v1.0.1 Installed StatisticalTraits ───────────────── v3.5.0 Installed PtrArrays ───────────────────────── v1.4.0 Installed Preferences ─────────────────────── v1.5.2 Installed NNlib ───────────────────────────── v0.9.36 Installed PrettyTables ────────────────────── v3.3.2 Installed HashArrayMappedTries ────────────── v0.2.0 Installed DataAPI ─────────────────────────── v1.16.0 Installed Tables ──────────────────────────── v1.12.1 Installed PDMats ──────────────────────────── v0.11.37 Installed FixedPointNumbers ───────────────── v0.8.6 Installed CategoricalArrays ───────────────── v1.1.1 Installed SpecialFunctions ────────────────── v2.8.0 Installed LearnAPI ────────────────────────── v2.0.1 Installed RecipesBase ─────────────────────── v1.3.4 Installed ScientificTypes ─────────────────── v3.3.0 Installed ProgressMeter ───────────────────── v1.11.0 Installed StaticArraysCore ────────────────── v1.4.4 Installed MLJNonnegativeMatrixFactorization ─ v0.1.1 Installed JLLWrappers ─────────────────────── v1.8.0 Installed MLJBase ─────────────────────────── v1.13.1 Installed Measurements ────────────────────── v2.14.1 Installed PrecompileTools ─────────────────── v1.3.4 Installed IteratorInterfaceExtensions ─────── v1.0.0 Installed DataValueInterfaces ─────────────── v1.0.0 Installed StaticArrays ────────────────────── v1.9.18 Installed LaTeXStrings ────────────────────── v1.4.0 Installed OrderedCollections ──────────────── v1.8.2 Installed Arpack ──────────────────────────── v0.5.4 Installed ScopedValues ────────────────────── v1.6.2 Installed InvertedIndices ─────────────────── v1.3.1 Installed DelimitedFiles ──────────────────── v1.9.1 Installed Rmath_jll ───────────────────────── v0.5.1+0 Installed Reexport ────────────────────────── v1.2.2 Installed FillArrays ──────────────────────── v1.16.0 Installed ChainRulesCore ──────────────────── v1.26.1 Installed Statistics ──────────────────────── v1.11.1 Installed QuadGK ──────────────────────────── v2.11.3 Installed LogExpFunctions ─────────────────── v1.0.1 Installed ComputationalResources ──────────── v0.3.2 Installed AliasTables ─────────────────────── v1.1.3 Installed Requires ────────────────────────── v1.3.1 Installed MacroTools ──────────────────────── v0.5.16 Installed DataStructures ──────────────────── v0.19.5 Installed StatsAPI ────────────────────────── v1.8.0 Installed KernelAbstractions ──────────────── v0.9.41 Installed MLUtils ─────────────────────────── v0.4.9 Installed Distributions ───────────────────── v0.25.127 Installed OpenSpecFun_jll ─────────────────── v0.5.6+0 Installed UnPack ──────────────────────────── v1.0.2 Installed Compat ──────────────────────────── v4.18.1 Installed Parameters ──────────────────────── v0.13.1 Installed Distances ───────────────────────── v0.10.12 Installed UnsafeAtomics ───────────────────── v0.3.1 Installed SimpleTraits ────────────────────── v0.9.6 Installed SortingAlgorithms ───────────────── v1.2.2 Installed Missings ────────────────────────── v1.2.0 Installed StatsBase ───────────────────────── v0.34.12 Installed StringManipulation ──────────────── v0.4.4 Installed Atomix ──────────────────────────── v1.1.3 Installed MultivariateStats ───────────────── v0.10.4 Installed DocStringExtensions ─────────────── v0.9.5 Installing 3 artifacts Installed artifact Rmath 121.9 KiB Installed artifact Arpack 138.3 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.12/Project.toml` [5fbdd59d] + MLJNonnegativeMatrixFactorization v0.1.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [a9b6321e] + Atomix v1.1.3 [49dc2e85] + Calculus v0.5.2 [324d7699] + CategoricalArrays v1.1.1 [af321ab8] + CategoricalDistributions v0.2.2 [d360d2e6] + ChainRulesCore v1.26.1 [3da002f7] + ColorTypes v0.12.1 [34da2185] + Compat v4.18.1 [ed09eef8] + ComputationalResources v0.3.2 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [63c18a36] + KernelAbstractions v0.9.41 [b964fa9f] + LaTeXStrings v1.4.0 [92ad9a40] + LearnAPI v2.0.1 [2ab3a3ac] + LogExpFunctions v1.0.1 [c2834f40] + MLCore v1.0.2 [a7f614a8] + MLJBase v1.13.1 [e80e1ace] + MLJModelInterface v1.12.1 [5fbdd59d] + MLJNonnegativeMatrixFactorization v0.1.1 [f1d291b0] + MLUtils v0.4.9 [1914dd2f] + MacroTools v0.5.16 [eff96d63] + Measurements v2.14.1 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.4 [872c559c] + NNlib v0.9.36 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.13.1 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [321657f4] + ScientificTypes v3.3.0 [30f210dd] + ScientificTypesBase v3.1.0 [7e506255] + ScopedValues v1.6.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.8.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [c062fc1d] + StatisticalMeasuresBase v0.1.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.1 ⌅ [68821587] + Arpack_jll v3.5.2+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 11.79s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4363.8 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/RUPmD/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 2150.5 ms ✓ Combinatorics 1270.2 ms ✓ Calculus 5178.3 ms ✓ PrettyPrinting 831.8 ms ✓ LaTeXStrings 699.9 ms ✓ IteratorInterfaceExtensions 4007.9 ms ✓ UnsafeAtomics 902.5 ms ✓ StatsAPI 830.8 ms ✓ UnPack 1911.8 ms ✓ FillArrays 1124.5 ms ✓ Statistics 3835.2 ms ✓ ShowCases 7391.3 ms ✓ MacroTools 3888.1 ms ✓ OrderedCollections 717.7 ms ✓ DataValueInterfaces 892.6 ms ✓ StableRNGs 733.3 ms ✓ Reexport 1057.0 ms ✓ DocStringExtensions 1048.5 ms ✓ AbstractTrees 4936.5 ms ✓ IrrationalConstants 1223.1 ms ✓ URIs 792.3 ms ✓ SimpleBufferStream 775.8 ms ✓ PtrArrays 1352.3 ms ✓ TranscodingStreams 891.7 ms ✓ HashArrayMappedTries 928.1 ms ✓ DelimitedFiles 860.1 ms ✓ InvertedIndices 882.0 ms ✓ Adapt 795.2 ms ✓ DataAPI 4459.5 ms ✓ Crayons 809.4 ms ✓ BitFlags 942.2 ms ✓ ComputationalResources 922.5 ms ✓ StaticArraysCore 1549.6 ms ✓ ConcurrentUtilities 1850.7 ms ✓ PDMats 1666.6 ms ✓ NonNegLeastSquares 1145.0 ms ✓ Requires 1826.7 ms ✓ ProgressMeter 1847.5 ms ✓ SentinelArrays 4147.5 ms ✓ StructUtils 840.2 ms ✓ Scratch 1018.1 ms ✓ LoggingExtras 1119.3 ms ✓ Preferences 3623.4 ms ✓ Compat 1300.5 ms ✓ ScientificTypesBase 927.0 ms ✓ RandomizedLinAlg 1537.5 ms ✓ ExceptionUnwrapping 1230.4 ms ✓ Measurements 731.4 ms ✓ TableTraits 959.1 ms ✓ Atomix 1423.1 ms ✓ FillArrays → FillArraysSparseArraysExt 6337.2 ms ✓ FixedPointNumbers 4033.0 ms ✓ Distances 1210.2 ms ✓ Statistics → SparseArraysExt 1170.9 ms ✓ EarlyStopping 888.6 ms ✓ FillArrays → FillArraysStatisticsExt 3174.9 ms ✓ SimpleTraits 3501.2 ms ✓ DataStructures 803.8 ms ✓ Parameters 1245.6 ms ✓ LogExpFunctions 925.1 ms ✓ AliasTables 905.0 ms ✓ CodecZlib 981.3 ms ✓ ScopedValues 1241.0 ms ✓ Adapt → AdaptSparseArraysExt 1227.5 ms ✓ GPUArraysCore 3216.1 ms ✓ Missings 3784.7 ms ✓ OpenSSL 1355.8 ms ✓ FillArrays → FillArraysPDMatsExt 841.2 ms ✓ StructUtils → StructUtilsStaticArraysCoreExt 1137.1 ms ✓ RelocatableFolders 1330.6 ms ✓ JLLWrappers 1787.3 ms ✓ LearnAPI 1063.8 ms ✓ PrecompileTools 875.8 ms ✓ Compat → CompatLinearAlgebraExt 1313.5 ms ✓ StatisticalTraits 855.0 ms ✓ StructUtils → StructUtilsMeasurementsExt 4719.9 ms ✓ Tables 5221.6 ms ✓ ColorTypes 1362.7 ms ✓ Distances → DistancesSparseArraysExt 3542.2 ms ✓ IterationControl 1128.0 ms ✓ SortingAlgorithms 4959.8 ms ✓ QuadGK 1421.1 ms ✓ Rmath_jll 1400.9 ms ✓ Arpack_jll 1397.3 ms ✓ MbedTLS_jll 1442.2 ms ✓ OpenSpecFun_jll 16882.1 ms ✓ StaticArrays 3158.6 ms ✓ RecipesBase 3565.8 ms ✓ StringManipulation 14555.4 ms ✓ Parsers 3883.7 ms ✓ ChainRulesCore 5666.5 ms ✓ CategoricalArrays 2722.9 ms ✓ MLJModelInterface 1219.4 ms ✓ TableOperations 939.5 ms ✓ StructUtils → StructUtilsTablesExt 3842.2 ms ✓ MLCore 1241.5 ms ✓ ColorTypes → StyledStringsExt 7594.5 ms ✓ StatsBase 1568.6 ms ✓ Rmath 1583.6 ms ✓ Arpack 2249.5 ms ✓ MbedTLS 6138.3 ms ✓ SpecialFunctions 2492.1 ms ✓ BitBasis 1482.6 ms ✓ StaticArrays → StaticArraysStatisticsExt 1497.6 ms ✓ FillArrays → FillArraysStaticArraysExt 1417.9 ms ✓ Adapt → AdaptStaticArraysExt 1287.6 ms ✓ Measurements → MeasurementsRecipesBaseExt 48785.7 ms ✓ PrettyTables 9926.1 ms ✓ JSON 4122.4 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 893.2 ms ✓ Distances → DistancesChainRulesCoreExt 3539.6 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 4206.5 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 5358.9 ms ✓ ARFFFiles 3779.3 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 1069.6 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 2736.2 ms ✓ FeatureSelection 1994.1 ms ✓ MLJWrappers 2101.4 ms ✓ LatinHypercubeSampling 1508.6 ms ✓ PDMats → StatsBaseExt 27793.8 ms ✓ NMF 1790.2 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 32638.8 ms ✓ HTTP 4415.7 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2295.9 ms ✓ HypergeometricFunctions 1082.3 ms ✓ Measurements → MeasurementsSpecialFunctionsExt 9488.5 ms ✓ NearestNeighbors 11238.2 ms ✓ KernelAbstractions 1157.2 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 5038.8 ms ✓ StatsFuns 5664.7 ms ✓ NearestNeighborModels 3194.2 ms ✓ KernelAbstractions → SparseArraysExt 2249.9 ms ✓ KernelAbstractions → LinearAlgebraExt 7235.1 ms ✓ OpenML 3935.4 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 9714.2 ms ✓ Distributions 14724.7 ms ✓ NNlib 3424.4 ms ✓ Distributions → DistributionsTestExt 5803.6 ms ✓ Distributions → DistributionsChainRulesCoreExt 9182.6 ms ✓ ScientificTypes 3557.0 ms ✓ MultivariateStats 2766.9 ms ✓ NNlib → NNlibSpecialFunctionsExt 10989.3 ms ✓ MLUtils 12145.8 ms ✓ CategoricalDistributions 14426.1 ms ✓ MLJTransforms 20925.6 ms ✓ StatisticalMeasuresBase 20825.7 ms ✓ MLJModels 46073.2 ms ✓ StatisticalMeasures 16159.0 ms ✓ MLJBase 10129.7 ms ✓ MLJEnsembles ✗ StatisticalMeasures → ScientificTypesExt 11091.5 ms ✓ MLJBalancing 15663.6 ms ✓ MLJTestInterface ✗ MLJBase → DefaultMeasuresExt 11948.0 ms ✓ MLJNonnegativeMatrixFactorization 13484.4 ms ✓ MLJIteration 11388.0 ms ✓ MLJTuning ✗ MLJ ✗ MLJTestIntegration 154 dependencies successfully precompiled in 775 seconds. 38 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 107 dependents of these packages may trigger further precompilation to work with the unexpected versions. ERROR: LoadError: The following 2 direct dependencies failed to precompile: MLJBase → DefaultMeasuresExt Failed to precompile DefaultMeasuresExt [fe5f6ac0-33d3-5066-8083-2d519bb7c971] to "/home/pkgeval/.julia/compiled/v1.12/DefaultMeasuresExt/jl_zJCiTy". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] top-level scope @ ~/.julia/packages/MLJBase/DCbte/ext/DefaultMeasuresExt.jl:5 [12] include(mod::Module, _path::String) @ Base ./Base.jl:306 [13] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [14] top-level scope @ stdin:5 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [17] include_string @ ./loading.jl:2883 [inlined] [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [19] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJBase/DCbte/ext/DefaultMeasuresExt.jl:1 in expression starting at stdin:5 MLJTestIntegration Failed to precompile MLJTestIntegration [697918b4-fdc1-4f9e-8ff9-929724cee270] to "/home/pkgeval/.julia/compiled/v1.12/MLJTestIntegration/jl_ZfRBWG". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] include(mod::Module, _path::String) @ Base ./Base.jl:306 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3027 [13] top-level scope @ stdin:5 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [16] include_string @ ./loading.jl:2883 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [18] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJ/KcLme/src/MLJ.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to "/home/pkgeval/.julia/compiled/v1.12/MLJ/jl_3Yt6hl". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3314 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 [7] #invokelatest_gr#239 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3885 [10] maybe_cachefile_lock @ ./loading.jl:3882 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] top-level scope @ ~/.julia/packages/MLJTestIntegration/EIfny/src/MLJTestIntegration.jl:5 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [23] include_string @ ./loading.jl:2883 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJTestIntegration/EIfny/src/MLJTestIntegration.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 803.37s ################################################################################ # Testing # Testing MLJNonnegativeMatrixFactorization Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_1BnDvY/Project.toml` [b4f34e82] ↑ Distances v0.10.11 ⇒ v0.10.12 [31c24e10] ↑ Distributions v0.25.109 ⇒ v0.25.127 [a7f614a8] ↑ MLJBase v1.6.0 ⇒ v1.13.1 [5fbdd59d] + MLJNonnegativeMatrixFactorization v0.1.1 [697918b4] ↑ MLJTestIntegration v0.5.2 ⇒ v0.5.5 [6ef6ca0d] ↑ NMF v1.0.2 ⇒ v1.0.3 [860ef19b] ↑ StableRNGs v1.0.2 ⇒ v1.0.4 [bd369af6] ↑ Tables v1.11.1 ⇒ v1.12.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0 [9a3f8284] ~ Random ⇒ v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_1BnDvY/Manifest.toml` [da404889] ↑ ARFFFiles v1.4.1 ⇒ v1.6.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] ↑ Adapt v4.0.4 ⇒ v4.6.1 [dce04be8] - ArgCheck v2.3.0 [7d9fca2a] + Arpack v0.5.4 [a9b6321e] ↑ Atomix v0.1.0 ⇒ v1.1.3 [198e06fe] - BangBang v0.3.40 [9718e550] - Baselet v0.1.1 [50ba71b6] + BitBasis v0.9.10 [d1d4a3ce] ↑ BitFlags v0.1.9 ⇒ v0.1.10 [fa961155] - CEnum v0.5.0 [49dc2e85] ↑ Calculus v0.5.1 ⇒ v0.5.2 [324d7699] ↑ CategoricalArrays v0.10.8 ⇒ v1.1.1 [af321ab8] ↑ CategoricalDistributions v0.1.15 ⇒ v0.2.2 [d360d2e6] ↑ ChainRulesCore v1.24.0 ⇒ v1.26.1 [944b1d66] ↑ CodecZlib v0.7.5 ⇒ v0.7.8 [3da002f7] ↑ ColorTypes v0.11.5 ⇒ v0.12.1 [861a8166] ↑ Combinatorics v1.0.2 ⇒ v1.1.0 [34da2185] ↑ Compat v4.15.0 ⇒ v4.18.1 [a33af91c] - CompositionsBase v0.1.2 [f0e56b4a] ↑ ConcurrentUtilities v2.4.2 ⇒ v2.5.1 [187b0558] - ConstructionBase v1.5.5 [6add18c4] - ContextVariablesX v0.1.3 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.19.5 [244e2a9f] - DefineSingletons v0.1.2 [b4f34e82] ↑ Distances v0.10.11 ⇒ v0.10.12 [31c24e10] ↑ Distributions v0.25.109 ⇒ v0.25.127 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [fa6b7ba4] - DualNumbers v0.6.8 [460bff9d] ↑ ExceptionUnwrapping v0.1.10 ⇒ v0.1.11 [cc61a311] - FLoops v0.2.1 [b9860ae5] - FLoopsBase v0.1.1 [33837fe5] ↑ FeatureSelection v0.1.1 ⇒ v0.2.6 [48062228] - FilePathsBase v0.9.21 [1a297f60] ↑ FillArrays v1.11.0 ⇒ v1.16.0 ⌅ [53c48c17] ↑ FixedPointNumbers v0.8.5 ⇒ v0.8.6 [46192b85] ↑ GPUArraysCore v0.1.6 ⇒ v0.2.0 ⌅ [cd3eb016] ↑ HTTP v1.10.8 ⇒ v1.11.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] ↑ HypergeometricFunctions v0.3.23 ⇒ v0.3.28 [22cec73e] - InitialValues v0.3.1 [41ab1584] ↑ InvertedIndices v1.3.0 ⇒ v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.6 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.8.0 [682c06a0] ↑ JSON v0.21.4 ⇒ v1.6.1 [b14d175d] - JuliaVariables v0.2.4 [63c18a36] ↑ KernelAbstractions v0.9.22 ⇒ v0.9.41 [929cbde3] - LLVM v8.0.0 [b964fa9f] ↑ LaTeXStrings v1.3.1 ⇒ v1.4.0 [92ad9a40] ↑ LearnAPI v0.1.0 ⇒ v2.0.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v1.0.1 [e6f89c97] ↑ LoggingExtras v1.0.3 ⇒ v1.2.0 [c2834f40] + MLCore v1.0.2 [64a0f543] - MLFlowClient v0.5.1 [add582a8] ↑ MLJ v0.20.6 ⇒ v0.23.2 [45f359ea] ↑ MLJBalancing v0.1.5 ⇒ v0.1.6 [a7f614a8] ↑ MLJBase v1.6.0 ⇒ v1.13.1 [50ed68f4] ↑ MLJEnsembles v0.4.3 ⇒ v0.4.5 [7b7b8358] - MLJFlow v0.5.0 [614be32b] ↑ MLJIteration v0.6.2 ⇒ v0.6.5 [e80e1ace] ↑ MLJModelInterface v1.11.0 ⇒ v1.12.1 [d491faf4] ↑ MLJModels v0.17.2 ⇒ v0.18.8 [5fbdd59d] + MLJNonnegativeMatrixFactorization v0.1.1 [697918b4] ↑ MLJTestIntegration v0.5.2 ⇒ v0.5.5 [72560011] ↑ MLJTestInterface v0.2.6 ⇒ v0.2.9 [23777cdb] + MLJTransforms v0.1.6 [03970b2e] ↑ MLJTuning v0.8.7 ⇒ v0.8.9 [b5d0f7f3] + MLJWrappers v0.1.3 [d8e11817] - MLStyle v0.4.17 [f1d291b0] ↑ MLUtils v0.4.4 ⇒ v0.4.9 [1914dd2f] ↑ MacroTools v0.5.13 ⇒ v0.5.16 [739be429] ↑ MbedTLS v1.1.9 ⇒ v1.1.10 [eff96d63] + Measurements v2.14.1 [128add7d] - MicroCollections v0.1.4 [6f286f6a] + MultivariateStats v0.10.4 [6ef6ca0d] ↑ NMF v1.0.2 ⇒ v1.0.3 [872c559c] ↑ NNlib v0.9.19 ⇒ v0.9.36 [77ba4419] - NaNMath v1.0.2 [71a1bf82] - NameResolution v0.1.5 [b8a86587] ↑ NearestNeighbors v0.4.18 ⇒ v0.4.27 [b7351bd1] ↑ NonNegLeastSquares v0.4.0 ⇒ v0.4.1 [8b6db2d4] ↑ OpenML v0.3.1 ⇒ v0.3.3 [4d8831e6] ↑ OpenSSL v1.4.3 ⇒ v1.6.1 ⌅ [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.2 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.37 [69de0a69] ↑ Parsers v2.8.1 ⇒ v2.8.6 [aea7be01] ↑ PrecompileTools v1.2.1 ⇒ v1.3.4 [21216c6a] ↑ Preferences v1.4.3 ⇒ v1.5.2 [8162dcfd] - PrettyPrint v0.2.0 [08abe8d2] ↑ PrettyTables v2.3.2 ⇒ v3.3.2 [92933f4c] ↑ ProgressMeter v1.10.0 ⇒ v1.11.0 [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.4.0 [1fd47b50] ↑ QuadGK v2.9.4 ⇒ v2.11.3 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.9.0 [321657f4] ↑ ScientificTypes v3.0.2 ⇒ v3.3.0 [30f210dd] ↑ ScientificTypesBase v3.0.0 ⇒ v3.1.0 [7e506255] + ScopedValues v1.6.2 [6c6a2e73] ↑ Scratch v1.2.1 ⇒ v1.3.0 [91c51154] + SentinelArrays v1.4.10 [efcf1570] - Setfield v1.1.1 [777ac1f9] ↑ SimpleBufferStream v1.1.0 ⇒ v1.2.0 [699a6c99] ↑ SimpleTraits v0.9.4 ⇒ v0.9.6 [a2af1166] ↑ SortingAlgorithms v1.2.1 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.8.0 [171d559e] - SplittablesBase v0.1.15 [860ef19b] ↑ StableRNGs v1.0.2 ⇒ v1.0.4 [90137ffa] ↑ StaticArrays v1.9.7 ⇒ v1.9.18 [1e83bf80] ↑ StaticArraysCore v1.4.3 ⇒ v1.4.4 [a19d573c] ↑ StatisticalMeasures v0.1.6 ⇒ v0.3.6 [c062fc1d] ↑ StatisticalMeasuresBase v0.1.1 ⇒ v0.1.4 [64bff920] ↑ StatisticalTraits v3.4.0 ⇒ v3.5.0 [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.8.0 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.12 [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v2.2.0 [892a3eda] ↑ StringManipulation v0.3.4 ⇒ v0.4.4 [ec057cc2] + StructUtils v2.8.2 [ab02a1b2] + TableOperations v1.2.0 [bd369af6] ↑ Tables v1.11.1 ⇒ v1.12.1 [3bb67fe8] ↑ TranscodingStreams v0.11.0 ⇒ v0.11.3 [28d57a85] - Transducers v0.4.80 [5c2747f8] ↑ URIs v1.5.1 ⇒ v1.6.1 [013be700] ↑ UnsafeAtomics v0.2.1 ⇒ v0.3.1 [d80eeb9a] - UnsafeAtomicsLLVM v0.1.5 ⌅ [68821587] + Arpack_jll v3.5.2+0 [dad2f222] - LLVMExtra_jll v0.0.30+0 [c8ffd9c3] ↑ MbedTLS_jll v2.28.2+1 ⇒ v2.28.1010+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.2+0 ⇒ v0.5.1+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] ~ Distributed ⇒ v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] ~ Future ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] - LazyArtifacts [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.12.1 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.15.0+0 [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.0+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.11.4 [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.7+0 [458c3c95] ↑ OpenSSL_jll v3.0.14+0 ⇒ v3.5.6+0 [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.8.3+2 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.15.0+0 [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.64.0+1 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_1BnDvY/Project.toml` [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [a7f614a8] MLJBase v1.13.1 [5fbdd59d] MLJNonnegativeMatrixFactorization v0.1.1 [697918b4] MLJTestIntegration v0.5.5 [6ef6ca0d] NMF v1.0.3 [860ef19b] StableRNGs v1.0.4 [bd369af6] Tables v1.12.1 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_1BnDvY/Manifest.toml` [da404889] ARFFFiles v1.6.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [a9b6321e] Atomix v1.1.3 [50ba71b6] BitBasis v0.9.10 [d1d4a3ce] BitFlags v0.1.10 [49dc2e85] Calculus v0.5.2 [324d7699] CategoricalArrays v1.1.1 [af321ab8] CategoricalDistributions v0.2.2 [d360d2e6] ChainRulesCore v1.26.1 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [861a8166] Combinatorics v1.1.0 [34da2185] Compat v4.18.1 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [792122b4] EarlyStopping v0.3.0 [460bff9d] ExceptionUnwrapping v0.1.11 [33837fe5] FeatureSelection v0.2.6 [1a297f60] FillArrays v1.16.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [46192b85] GPUArraysCore v0.2.0 ⌅ [cd3eb016] HTTP v1.11.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [b3c1a2ee] IterationControl v0.5.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [63c18a36] KernelAbstractions v0.9.41 [b964fa9f] LaTeXStrings v1.4.0 [a5e1c1ea] LatinHypercubeSampling v1.9.0 [92ad9a40] LearnAPI v2.0.1 [2ab3a3ac] LogExpFunctions v1.0.1 [e6f89c97] LoggingExtras v1.2.0 [c2834f40] MLCore v1.0.2 [add582a8] MLJ v0.23.2 [45f359ea] MLJBalancing v0.1.6 [a7f614a8] MLJBase v1.13.1 [50ed68f4] MLJEnsembles v0.4.5 [614be32b] MLJIteration v0.6.5 [e80e1ace] MLJModelInterface v1.12.1 [d491faf4] MLJModels v0.18.8 [5fbdd59d] MLJNonnegativeMatrixFactorization v0.1.1 [697918b4] MLJTestIntegration v0.5.5 [72560011] MLJTestInterface v0.2.9 [23777cdb] MLJTransforms v0.1.6 [03970b2e] MLJTuning v0.8.9 [b5d0f7f3] MLJWrappers v0.1.3 [f1d291b0] MLUtils v0.4.9 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.10 [eff96d63] Measurements v2.14.1 [e1d29d7a] Missings v1.2.0 [6f286f6a] MultivariateStats v0.10.4 [6ef6ca0d] NMF v1.0.3 [872c559c] NNlib v0.9.36 [636a865e] NearestNeighborModels v0.2.3 [b8a86587] NearestNeighbors v0.4.27 [b7351bd1] NonNegLeastSquares v0.4.1 [8b6db2d4] OpenML v0.3.3 [4d8831e6] OpenSSL v1.6.1 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 ⌅ [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.6 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [54e16d92] PrettyPrinting v0.4.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [0448d7d9] RandomizedLinAlg v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [321657f4] ScientificTypes v3.3.0 [30f210dd] ScientificTypesBase v3.1.0 [7e506255] ScopedValues v1.6.2 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.10 [605ecd9f] ShowCases v0.1.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.6 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.8.0 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [a19d573c] StatisticalMeasures v0.3.6 [c062fc1d] StatisticalMeasuresBase v0.1.4 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [892a3eda] StringManipulation v0.4.4 [ec057cc2] StructUtils v2.8.2 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.1 ⌅ [68821587] Arpack_jll v3.5.2+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... ✗ StatisticalMeasures → ScientificTypesExt ✗ MLJBase → DefaultMeasuresExt ✗ MLJ Info Given MLJTestIntegration was explicitly requested, output will be shown live  ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace:  [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1304  [2] _include_from_serialized  @ ./loading.jl:1276 [inlined]  [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2116  [4] _require_search_from_serialized  @ ./loading.jl:2010 [inlined]  [5] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2628  [6] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2494  [7] macro expansion  @ ./loading.jl:2422 [inlined]  [8] macro expansion  @ ./lock.jl:376 [inlined]  [9] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2387  [10] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2363  [11] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3027  [13] top-level scope  @ stdin:5  [14] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2873  [16] include_string  @ ./loading.jl:2883 [inlined]  [17] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [18] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJ/KcLme/src/MLJ.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to "/home/pkgeval/.julia/compiled/v1.12/MLJ/jl_VYC1ze". Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3314  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()  @ Base ./loading.jl:2682  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117  [7] #invokelatest_gr#239  @ ./reflection.jl:1297 [inlined]  [8] invokelatest_gr  @ ./reflection.jl:1289 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3885  [10] maybe_cachefile_lock  @ ./loading.jl:3882 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2668  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2494  [13] macro expansion  @ ./loading.jl:2422 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2387  [16] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2363  [17] top-level scope  @ ~/.julia/packages/MLJTestIntegration/EIfny/src/MLJTestIntegration.jl:5  [18] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3027  [20] top-level scope  @ stdin:5  [21] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2873  [23] include_string  @ ./loading.jl:2883 [inlined]  [24] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [25] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJTestIntegration/EIfny/src/MLJTestIntegration.jl:1 in expression starting at stdin:5 ✗ MLJTestIntegration 0 dependencies successfully precompiled in 61 seconds. 185 already precompiled. 121 dependencies precompiled but different versions are currently loaded (Adapt, Adapt → AdaptSparseArraysExt, Adapt → AdaptStaticArraysExt, AliasTables, Atomix, Base64, Calculus, CategoricalArrays, CategoricalArrays → CategoricalArraysRecipesBaseExt, CategoricalArrays → CategoricalArraysStatsBaseExt, CategoricalDistributions, ChainRulesCore, ChainRulesCore → ChainRulesCoreSparseArraysExt, ColorTypes, ColorTypes → StyledStringsExt, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, ComputationalResources, Crayons, DataAPI, DataStructures, DataValueInterfaces, Dates, DelimitedFiles, Distances, Distances → DistancesChainRulesCoreExt, Distances → DistancesSparseArraysExt, Distributed, Distributions, Distributions → DistributionsChainRulesCoreExt, Distributions → DistributionsTestExt, DocStringExtensions, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStaticArraysExt, FillArrays → FillArraysStatisticsExt, FixedPointNumbers, GPUArraysCore, HypergeometricFunctions, InteractiveUtils, InvertedIndices, IrrationalConstants, IteratorInterfaceExtensions, JLLWrappers, JuliaSyntaxHighlighting, KernelAbstractions, KernelAbstractions → LinearAlgebraExt, KernelAbstractions → SparseArraysExt, LaTeXStrings, LearnAPI, LogExpFunctions, LogExpFunctions → LogExpFunctionsChainRulesCoreExt, Logging, MLCore, MLJBase, MLJModelInterface, MLUtils, MacroTools, Markdown, Measurements, Measurements → MeasurementsRecipesBaseExt, Measurements → MeasurementsSpecialFunctionsExt, Missings, Mmap, NNlib, NNlib → NNlibSpecialFunctionsExt, OpenLibm_jll, OpenSpecFun_jll, OrderedCollections, PDMats, PDMats → StatsBaseExt, Parameters, PrecompileTools, Preferences, PrettyTables, Printf, ProgressMeter, PtrArrays, QuadGK, REPL, RecipesBase, Reexport, Rmath, Rmath_jll, ScientificTypes, ScientificTypesBase, ScopedValues, Serialization, ShowCases, SimpleTraits, SortingAlgorithms, SparseArrays, SpecialFunctions, SpecialFunctions → SpecialFunctionsChainRulesCoreExt, StableRNGs, StaticArrays, StaticArrays → StaticArraysChainRulesCoreExt, StaticArrays → StaticArraysStatisticsExt, StaticArraysCore, StatisticalMeasuresBase, StatisticalTraits, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StatsFuns → StatsFunsChainRulesCoreExt, StringManipulation, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, TableTraits, Tables, Test, UUIDs, UnPack, Unicode and UnsafeAtomics). Restart julia to access the new versions. Otherwise, 46 dependents of these packages may trigger further precompilation to work with the unexpected versions. ERROR: LoadError: The following 2 direct dependencies failed to precompile: MLJBase → DefaultMeasuresExt Failed to precompile DefaultMeasuresExt [fe5f6ac0-33d3-5066-8083-2d519bb7c971] to "/home/pkgeval/.julia/compiled/v1.12/DefaultMeasuresExt/jl_dvyt11". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] top-level scope @ ~/.julia/packages/MLJBase/DCbte/ext/DefaultMeasuresExt.jl:5 [12] include(mod::Module, _path::String) @ Base ./Base.jl:306 [13] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [14] top-level scope @ stdin:5 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [17] include_string @ ./loading.jl:2883 [inlined] [18] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [19] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJBase/DCbte/ext/DefaultMeasuresExt.jl:1 in expression starting at stdin:5 MLJTestIntegration Failed to precompile MLJTestIntegration [697918b4-fdc1-4f9e-8ff9-929724cee270] to "/home/pkgeval/.julia/compiled/v1.12/MLJTestIntegration/jl_MKz2oe". ERROR: LoadError: circular type parameter constraint in definition of LittleDict Stacktrace: [1] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1304 [2] _include_from_serialized @ ./loading.jl:1276 [inlined] [3] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2116 [4] _require_search_from_serialized @ ./loading.jl:2010 [inlined] [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2628 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [7] macro expansion @ ./loading.jl:2422 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [10] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [11] include(mod::Module, _path::String) @ Base ./Base.jl:306 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3027 [13] top-level scope @ stdin:5 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [16] include_string @ ./loading.jl:2883 [inlined] [17] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [18] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJ/KcLme/src/MLJ.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MLJ [add582a8-e3ab-11e8-2d5e-e98b27df1bc7] to "/home/pkgeval/.julia/compiled/v1.12/MLJ/jl_VYC1ze". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3314 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2682 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:96 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:91 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:117 [7] #invokelatest_gr#239 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3885 [10] maybe_cachefile_lock @ ./loading.jl:3882 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2668 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2494 [13] macro expansion @ ./loading.jl:2422 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2387 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2363 [17] top-level scope @ ~/.julia/packages/MLJTestIntegration/EIfny/src/MLJTestIntegration.jl:5 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3027 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2873 [23] include_string @ ./loading.jl:2883 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MLJTestIntegration/EIfny/src/MLJTestIntegration.jl:1 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/MLJNonnegativeMatrixFactorization/DgPhE/test/runtests.jl:6 Testing failed after 79.28s ERROR: LoadError: Package MLJNonnegativeMatrixFactorization errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 930.9s: package fails to precompile