Package evaluation to test MCPhylo on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-20T11:10:10.498 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.11s ################################################################################ # Installation # Installing MCPhylo... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [af0ac7d2] + MCPhylo v0.9.5 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 ⌅ [ec485272] + ArnoldiMethod v0.1.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.25.0 [a9b6321e] + Atomix v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 ⌅ [76274a88] + Bijectors v0.10.8 [d1d4a3ce] + BitFlags v0.1.10 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [082447d4] + ChainRules v1.73.0 [d360d2e6] + ChainRulesCore v1.26.1 [9e997f8a] + ChangesOfVariables v0.1.10 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.7 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [c87230d0] + FFMPEG v0.4.5 [b86e33f2] + FFTA v0.3.1 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.31.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 ⌅ [d9f16b24] + Functors v0.3.0 [0c68f7d7] + GPUArrays v11.5.8 [46192b85] + GPUArraysCore v0.2.0 [28b8d3ca] + GR v0.73.26 [42e2da0e] + Grisu v1.0.2 ⌅ [cd3eb016] + HTTP v1.11.0 [076d061b] + HashArrayMappedTries v0.2.0 [3e5b6fbb] + HostCPUFeatures v0.1.18 [34004b35] + HypergeometricFunctions v0.3.28 [7869d1d1] + IRTools v0.4.17 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [a98d9a8b] + Interpolations v0.16.3 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 [63c18a36] + KernelAbstractions v0.9.41 [5ab0869b] + KernelDensity v0.6.12 [929cbde3] + LLVM v9.9.0 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [093fc24a] + LightGraphs v1.3.5 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [bdcacae8] + LoopVectorization v0.12.174 [af0ac7d2] + MCPhylo v0.9.5 [e53f0ae0] + MCPhyloTree v1.1.7 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.3 [739be429] + MbedTLS v1.1.10 [442fdcdd] + Measures v0.3.3 [e1d29d7a] + Missings v1.2.0 [46d2c3a1] + MuladdMacro v0.2.4 [6f286f6a] + MultivariateStats v0.10.4 [77ba4419] + NaNMath v1.1.4 [b8a86587] + NearestNeighbors v0.4.27 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.1 ⌅ [bac558e1] + OrderedCollections v1.8.2 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.6 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.4 [91a5bcdd] + Plots v1.41.6 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [37e2e3b7] + ReverseDiff v1.17.0 [79098fc4] + Rmath v0.9.0 ⌅ [f2b01f46] + Roots v2.3.0 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.46 [431bcebd] + SciMLPublic v1.0.1 [7e506255] + ScopedValues v1.6.2 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.8.0 [860ef19b] + StableRNGs v1.0.4 [aedffcd0] + Static v1.4.0 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 ⌅ [4c63d2b9] + StatsFuns v1.5.2 [f3b207a7] + StatsPlots v0.15.8 [09ab397b] + StructArrays v0.7.3 [ec057cc2] + StructUtils v2.8.2 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [8290d209] + ThreadingUtilities v0.5.6 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [013be700] + UnsafeAtomics v0.3.1 [41fe7b60] + Unzip v0.2.0 [3d5dd08c] + VectorizationBase v0.21.74 [cc8bc4a8] + Widgets v0.6.7 [efce3f68] + WoodburyMatrices v1.1.0 ⌅ [e88e6eb3] + Zygote v0.6.77 [700de1a5] + ZygoteRules v0.2.7 ⌅ [68821587] + Arpack_jll v3.5.2+0 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.7+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.8.1+0 [b22a6f82] + FFMPEG_jll v8.1.0+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.14.3+1 [559328eb] + FriBidi_jll v1.0.17+0 [0656b61e] + GLFW_jll v3.4.1+1 [d2c73de3] + GR_jll v0.73.26+0 ⌅ [b0724c58] + GettextRuntime_jll v0.22.4+0 [61579ee1] + Ghostscript_jll v9.55.1+0 [7746bdde] + Glib_jll v2.86.3+0 [3b182d85] + Graphite2_jll v1.3.16+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.5+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.1.0+0 [dad2f222] + LLVMExtra_jll v0.0.43+1 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.42.0+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.42.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [e7412a2a] + Ogg_jll v1.3.6+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.6.1+0 [36c8627f] + Pango_jll v1.57.1+0 [30392449] + Pixman_jll v0.46.4+0 [c0090381] + Qt6Base_jll v6.10.2+2 [629bc702] + Qt6Declarative_jll v6.10.2+2 [ce943373] + Qt6ShaderTools_jll v6.10.2+1 [6de9746b] + Qt6Svg_jll v6.10.2+0 [e99dba38] + Qt6Wayland_jll v6.10.2+1 [f50d1b31] + Rmath_jll v0.5.1+0 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 [a2964d1f] + Wayland_jll v1.24.0+0 [ffd25f8a] + XZ_jll v5.8.3+0 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.6+0 [4f6342f7] + Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.8+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.7+0 [ec84b674] + Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.2.0+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.6+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.47.0+1 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [a4ae2306] + libaom_jll v3.13.3+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [8e53e030] + libdrm_jll v2.4.125+1 [2db6ffa8] + libevdev_jll v1.13.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [36db933b] + libinput_jll v1.28.1+0 [b53b4c65] + libpng_jll v1.6.58+0 [9a156e7d] + libva_jll v2.23.0+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [009596ad] + mtdev_jll v1.1.7+0 ⌅ [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.16s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 198655.7 ms ? StatsPlots 103574.5 ms ? MCPhylo Precompilation completed after 346.71s ################################################################################ # Testing # Testing MCPhylo Status `/tmp/jl_eXyqH3/Project.toml` ⌅ [76274a88] Bijectors v0.10.8 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [31c24e10] Distributions v0.25.127 [6a86dc24] FiniteDiff v2.31.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [615f187c] IfElse v0.1.1 [093fc24a] LightGraphs v1.3.5 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.174 [af0ac7d2] MCPhylo v0.9.5 [e53f0ae0] MCPhyloTree v1.1.7 ⌃ [90014a1f] PDMats v0.11.35 [91a5bcdd] Plots v1.41.6 [92933f4c] ProgressMeter v1.11.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [37e2e3b7] ReverseDiff v1.17.0 [992d4aef] Showoff v1.0.3 [276daf66] SpecialFunctions v2.8.0 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 ⌅ [4c63d2b9] StatsFuns v1.5.2 [f3b207a7] StatsPlots v0.15.8 ⌅ [e88e6eb3] Zygote v0.6.77 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_eXyqH3/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 ⌅ [ec485272] ArnoldiMethod v0.1.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.25.0 [a9b6321e] Atomix v1.1.3 [13072b0f] AxisAlgorithms v1.1.0 ⌅ [76274a88] Bijectors v0.10.8 [d1d4a3ce] BitFlags v0.1.10 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [082447d4] ChainRules v1.73.0 [d360d2e6] ChainRulesCore v1.26.1 [9e997f8a] ChangesOfVariables v0.1.10 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... Info Given MCPhylo was explicitly requested, output will be shown live  WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. 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Otherwise, 49 dependents of these packages may trigger further precompilation to work with the unexpected versions. 1 dependency had output during precompilation: ┌ MCPhylo │ [Output was shown above] └ Precompiling packages... 12967.3 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 18 seconds. 50 already precompiled. 50 dependencies precompiled but different versions are currently loaded (AliasTables, Base64, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, DataAPI, DataStructures, Dates, Distributions, DocStringExtensions, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, HypergeometricFunctions, InteractiveUtils, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LogExpFunctions, Logging, Markdown, Missings, OpenLibm_jll, OpenSpecFun_jll, OrderedCollections, PDMats, Preferences, Printf, PtrArrays, QuadGK, Reexport, Rmath, Rmath_jll, Serialization, SortingAlgorithms, SparseArrays, SpecialFunctions, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, Test, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Running tests: >>> Testing distributions/phylodist.jl ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 >>> Testing distributions/treeconstraints.jl ┌ Warning: Skipped line with unsupported constraint type 'AbstractString["test", ""][1]'. │ Allowed types are 'mono', 'not_mono' and 'exc' └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/distributions/TreeConstraints.jl:162 ┌ Warning: Some trivial 'mono' / 'not_mono' type constraints were removed. │ A valid 'mono' / 'not_mono' constraint needs at least 2 elements. └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/distributions/TreeConstraints.jl:31 ┌ Warning: Some trivial 'exc' type constraints were removed. │ A non-trivial 'exc' constraints needs at least 2 elements in the first, and at least 1 in the second part of the tuple └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/distributions/TreeConstraints.jl:35 >>> Testing distributions/treedists.jl >>> Testing likelihood/rates.jl >>> Testing likelihood/substitutionmodels.jl >>> Testing likelihood/felsenstein.jl ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 >>> Testing mcmc/discretediag.jl >>> Testing mcmc/modelbuilding.jl >>> Testing model/dependent.jl >>> Testing model/variate.jl >>> Testing output/asdsf.jl >>> Testing output/chains.jl >>> Testing output/gelman.jl >>> Testing parser/csv.jl >>> Testing parser/nexus.jl ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 >>> Testing parser/parser.jl ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 >>> Testing samplers/sampler_construction.jl >>> Testing samplers/linear_model_uvp.jl >>> Testing samplers/linear_model_mvp.jl >>> Testing samplers/tree_samplers.jl ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: `Progress(n::Integer, desc::AbstractString, offset::Integer = 0; kwargs...)` is deprecated, use `Progress(n; desc = desc, offset = offset, kwargs...)` instead. │ caller = ip:0x0 └ @ Core :-1 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 87 running 1 of 1 signal (10): User defined signal 1 malloc at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) malloc_s at /source/src/support/dtypes.h:368 [inlined] alloc_env at /source/src/subtype.c:322 save_env at /source/src/subtype.c:330 [inlined] forall_exists_subtype at /source/src/subtype.c:1849 local_forall_exists_subtype at /source/src/subtype.c:1672 subtype_ccheck at /source/src/subtype.c:731 var_gt at /source/src/subtype.c:845 subtype at /source/src/subtype.c:1496 local_forall_exists_subtype at /source/src/subtype.c:1681 forall_exists_equal at /source/src/subtype.c:1807 subtype at /source/src/subtype.c:1588 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:1005 subtype at /source/src/subtype.c:1542 subtype_unionall at /source/src/subtype.c:1005 subtype at /source/src/subtype.c:1542 subtype_unionall at /source/src/subtype.c:1005 subtype at /source/src/subtype.c:1542 subtype_unionall at /source/src/subtype.c:1005 subtype at /source/src/subtype.c:1542 subtype_unionall at /source/src/subtype.c:1005 subtype at /source/src/subtype.c:1542 subtype_unionall at /source/src/subtype.c:1005 subtype at /source/src/subtype.c:1542 subtype_unionall at /source/src/subtype.c:1005 subtype at /source/src/subtype.c:1542 subtype_unionall at /source/src/subtype.c:1005 subtype at /source/src/subtype.c:1542 local_forall_exists_subtype at /source/src/subtype.c:1703 forall_exists_equal at /source/src/subtype.c:1810 subtype at /source/src/subtype.c:1588 subtype_tuple_tail at /source/src/subtype.c:1329 [inlined] subtype_tuple at /source/src/subtype.c:1408 [inlined] subtype at /source/src/subtype.c:1582 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 subtype_unionall at /source/src/subtype.c:998 subtype at /source/src/subtype.c:1545 exists_subtype at /source/src/subtype.c:1825 [inlined] forall_exists_subtype at /source/src/subtype.c:1854 ijl_subtype_env at /source/src/subtype.c:2313 jl_type_intersection_env_s at /source/src/subtype.c:4614 jl_f__compute_sparams at /source/src/builtins.c:2095 macro expansion at /home/pkgeval/.julia/packages/LoopVectorization/Y0o9B/src/condense_loopset.jl:1179 [inlined] FelsensteinFunction at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/Likelihood/LikelihoodCalculator_Node.jl:28 gradlogpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/distributions/Phylodist.jl:136 gradlogpdf_sub at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/distributions/distributionstruct.jl:157 [inlined] gradlogpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/dependent.jl:556 [inlined] gradlogpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/dependent.jl:548 unknown function (ip: 0x71be7708988c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 gradlogpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/simulation.jl:220 logpdfgrad! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/sampler.jl:184 logpdfgrad! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/sampler.jl:94 [inlined] grlpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/simulation.jl:345 [inlined] refraction! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/tree_hamiltonian/refraction.jl:22 #sample!#278 at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/pphmc.jl:104 sample! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/pphmc.jl:75 [inlined] sample! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/simulation.jl:347 unknown function (ip: 0x71be76f273b6) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 sample! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/simulation.jl:328 mcmc_worker! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:231 mcmc_worker! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:194 [inlined] mcmc_or_convergence at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/utils.jl:219 [inlined] iterate at ./generator.jl:48 [inlined] _collect at ./array.jl:810 collect_similar at ./array.jl:732 [inlined] map at ./abstractarray.jl:3375 [inlined] pmap2 at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/utils.jl:93 unknown function (ip: 0x71be771108a3) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 macro expansion at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/utils.jl:179 [inlined] macro expansion at ./task.jl:662 [inlined] assign_mcmc_work at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/utils.jl:172 #mcmc_master!#48 at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:166 mcmc_master! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:135 [inlined] #mcmc#47 at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:123 mcmc at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:75 unknown function (ip: 0x71be7705fd2c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 macro expansion at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/utils.jl:5 [inlined] macro expansion at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/runtests.jl:94 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] macro expansion at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/runtests.jl:93 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] top-level scope at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/runtests.jl:56 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 jl_toplevel_eval_flex at /source/src/toplevel.c:1024 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_53184.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x71be93114249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_70429.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x789badf84f03) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x789badf73f0c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x789badf70609) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x789badf70241) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x789badf67be0) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x789badf64baf) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_64964.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x789bca38e249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000789bafbfc010 Total snapshots: 358. Utilization: 0% ╎358 @Base/client.jl:550 _start() ╎ 358 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 358 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 358 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ 358 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ 358 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 358 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 358 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 358 @Pkg/src/API.jl:157 test ╎ ╎ 358 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 358 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 358 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 358 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 358 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 358 @Pkg/…erations.jl:2387 test ╎ ╎ ╎ 358 @Pkg/…erations.jl:2481 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 358 @Pkg/…rations.jl:2215 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 358 @Pkg/…rations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 358 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 358 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 358 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 358 @Pkg/…tions.jl:2278 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 358 @Pkg/…tions.jl:2164 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 358 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 358 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 358 @Pkg/…ions.jl:2496 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 358 @Pkg/…ons.jl:2556 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 358 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 358 @Base/…ss.jl:693 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 358 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 358 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 358 @Base/…sk.jl:1228 wait() 357╎ ╎ ╎ ╎ ╎ ╎ ╎ 358 @Base/…sk.jl:1216 poptask(W::Base.Intr… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_10036.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] start_task at /source/src/task.c:1253 unknown function (ip: (nil)) at (unknown file) Allocations: 25799379 (Pool: 25798596; Big: 783); GC: 21 [87] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/samplers/tree_samplers.jl:132 PkgEval terminated after 2727.88s: test duration exceeded the time limit