Package evaluation to test LAMMPS on Julia 1.12.7-DEV.42 (6f510b6086*) started at 2026-06-19T16:09:29.512 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.7s ################################################################################ # Installation # Installing LAMMPS... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [ee2e13b9] + LAMMPS v0.10.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.22.0 [8ce10254] + Bumper v0.7.2 [fa961155] + CEnum v0.5.0 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [ffbed154] + DocStringExtensions v0.9.5 [692b3bcd] + JLLWrappers v1.8.0 [ee2e13b9] + LAMMPS v0.10.0 [da04e1cc] + MPI v0.20.26 [3da0fdf6] + MPIPreferences v0.1.12 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [c4a57d5a] + UnsafeArrays v1.0.9 [4ee394cb] + CUDA_Driver_jll v13.3.0+0 [76a88914] + CUDA_Runtime_jll v0.23.0+0 [f5851436] + FFTW_jll v3.3.12+0 [e33a78d0] + Hwloc_jll v2.14.0+0 [5b3ab26d] + LAMMPS_jll v2.10.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [b5ada748] + MPIABI_jll v0.1.5+0 ⌅ [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.33+1 [fe0851c0] + OpenMPI_jll v5.0.11+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 16.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 10235.4 ms ✓ LAMMPS_jll 29415.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceEnzymeExt 21122.7 ms ✓ LAMMPS 3 dependencies successfully precompiled in 62 seconds. 93 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 45 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 102.69s ################################################################################ # Testing # Testing LAMMPS Status `/tmp/jl_QS8s0P/Project.toml` [47edcb42] ADTypes v1.22.0 [7da242da] Enzyme v0.13.162 [f6369f11] ForwardDiff v1.4.1 [ee2e13b9] LAMMPS v0.10.0 [da04e1cc] MPI v0.20.26 [90137ffa] StaticArrays v1.9.18 [c4a57d5a] UnsafeArrays v1.0.9 [8dfed614] Test v1.11.0 Status `/tmp/jl_QS8s0P/Manifest.toml` [47edcb42] ADTypes v1.22.0 [8ce10254] Bumper v0.7.2 [fa961155] CEnum v0.5.0 [bbf7d656] CommonSubexpressions v0.3.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 [ffbed154] DocStringExtensions v0.9.5 [7da242da] Enzyme v0.13.162 [f151be2c] EnzymeCore v0.8.20 [e2ba6199] ExprTools v0.1.10 [f6369f11] ForwardDiff v1.4.1 [61eb1bfa] GPUCompiler v1.22.1 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.8.0 [ee2e13b9] LAMMPS v0.10.0 [929cbde3] LLVM v9.9.0 [2ab3a3ac] LogExpFunctions v1.0.1 [da04e1cc] MPI v0.20.26 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [77ba4419] NaNMath v1.1.4 [d8793406] ObjectFile v0.5.0 [eebad327] PkgVersion v0.3.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [189a3867] Reexport v1.2.2 [6c6a2e73] Scratch v1.3.0 [276daf66] SpecialFunctions v2.8.0 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [53d494c1] StructIO v0.3.1 [e689c965] Tracy v0.1.6 [c4a57d5a] UnsafeArrays v1.0.9 [4ee394cb] CUDA_Driver_jll v13.3.0+0 [76a88914] CUDA_Runtime_jll v0.23.0+0 ⌅ [7cc45869] Enzyme_jll v0.0.269+0 [f5851436] FFTW_jll v3.3.12+0 [e33a78d0] Hwloc_jll v2.14.0+0 [5b3ab26d] LAMMPS_jll v2.10.0+0 [dad2f222] LLVMExtra_jll v0.0.43+1 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [ad6e5548] LibTracyClient_jll v0.13.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [b5ada748] MPIABI_jll v0.1.5+0 ⌅ [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [656ef2d0] OpenBLAS32_jll v0.3.33+1 [fe0851c0] OpenMPI_jll v5.0.11+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... LAMMPS (22 Jul 2025 - Update 2) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. using 1 OpenMP thread(s) per MPI task Total wall time: 0:00:00 ERROR: Invalid command-line argument: -nonesense (src/lammps.cpp:486) LAMMPS Exception: ERROR: Invalid command-line argument: -nonesense (src/lammps.cpp:486) Test Summary: | Pass Total Time Extract Setting/Global | 4 4 0.5s Test Summary: | Pass Total Time Extract Atom | 7 7 0.6s Test Summary: | Pass Total Time Variables | 10 10 2.7s Test Summary: | Pass Total Time gather/scatter | 22 22 4.2s Test Summary: | Pass Total Time Gather bonds/angles/dihedrals/impropers | 6 6 0.8s Test Summary: | Pass Total Time Extract Compute | 6 6 0.7s Test Summary: | Pass Total Time Utilities | 10 10 1.7s Test Summary: | Pass Total Time Create Atoms | 8 8 5.4s Test Summary: | Pass Total Time Custom Properties | 9 9 0.4s Test Summary: | Pass Total Time Image Flags | 3 3 0.1s Test Summary: | Pass Total Time Extract Box | 11 11 0.5s Test Summary: | Pass Total Time Neighbor lists | 4 4 0.2s Precompiling packages... 4142.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1 dependency successfully precompiled in 5 seconds. 22 already precompiled. 21 dependencies precompiled but different versions are currently loaded (ADTypes, CommonSubexpressions, CompilerSupportLibraries_jll, Dates, DiffResults, DiffRules, DifferentiationInterface, DocStringExtensions, ForwardDiff, IrrationalConstants, JLLWrappers, LogExpFunctions, MacroTools, NaNMath, OpenLibm_jll, OpenSpecFun_jll, Preferences, Printf, SpecialFunctions, StaticArraysCore and TOML). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 28664.4 ms ✓ Enzyme → EnzymeLogExpFunctionsExt 1 dependency successfully precompiled in 30 seconds. 51 already precompiled. 49 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, CEnum, CompilerSupportLibraries_jll, Dates, DocStringExtensions, Downloads, Enzyme, EnzymeCore, Enzyme_jll, ExprTools, GPUCompiler, InteractiveUtils, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LLVM, LLVMExtra_jll, LazyArtifacts, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, LogExpFunctions, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, ObjectFile, OpenSSL_jll, Pkg, PrecompileTools, Preferences, Printf, Reexport, Scratch, Serialization, SparseArrays, StructIO, StyledStrings, SuiteSparse_jll, TOML, Tar, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 30066.3 ms ✓ Enzyme → EnzymeSpecialFunctionsExt 1 dependency successfully precompiled in 30 seconds. 55 already precompiled. 53 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, CEnum, CompilerSupportLibraries_jll, Dates, DocStringExtensions, Downloads, Enzyme, Enzyme → EnzymeLogExpFunctionsExt, EnzymeCore, Enzyme_jll, ExprTools, GPUCompiler, InteractiveUtils, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LLVM, LLVMExtra_jll, LazyArtifacts, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, LogExpFunctions, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, ObjectFile, OpenLibm_jll, OpenSSL_jll, OpenSpecFun_jll, Pkg, PrecompileTools, Preferences, Printf, Reexport, Scratch, Serialization, SparseArrays, SpecialFunctions, StructIO, StyledStrings, SuiteSparse_jll, TOML, Tar, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 28888.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceEnzymeExt 1 dependency successfully precompiled in 29 seconds. 52 already precompiled. 50 dependencies precompiled but different versions are currently loaded (ADTypes, ADTypes → ADTypesEnzymeCoreExt, ArgTools, Base64, CEnum, CompilerSupportLibraries_jll, Dates, DifferentiationInterface, DifferentiationInterface → DifferentiationInterfaceSparseArraysExt, Downloads, Enzyme, EnzymeCore, Enzyme_jll, ExprTools, GPUCompiler, InteractiveUtils, JLLWrappers, JuliaSyntaxHighlighting, LLVM, LLVMExtra_jll, LazyArtifacts, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, ObjectFile, OpenSSL_jll, Pkg, PrecompileTools, Preferences, Printf, Reexport, Scratch, Serialization, SparseArrays, StructIO, StyledStrings, SuiteSparse_jll, TOML, Tar, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. Test Summary: | Pass Total Time external_pair_lj | 20 20 7.5s Test Summary: | Pass Total Time external_pair_coul | 20 20 1.0s Precompiling packages... Precompiling packages... LAMMPS_jll Being precompiled by another process (pid: 392, pidfile: /home/pkgeval/.julia/compiled/v1.12/LAMMPS_jll/MalPX_eJM3J.ji.pidfile) 5665.4 ms ✓ LAMMPS_jll 5848.7 ms ✓ LAMMPS_jll LAMMPS Being precompiled by another process (pid: 392, pidfile: /home/pkgeval/.julia/compiled/v1.12/LAMMPS/uvNJl_eJM3J.ji.pidfile) 8395.0 ms ✓ LAMMPS 2 dependencies successfully precompiled in 16 seconds. 58 already precompiled. 6 dependencies precompiled but different versions are currently loaded (Base64, JuliaSyntaxHighlighting, Logging, Markdown, Serialization and StyledStrings). Restart julia to access the new versions. Otherwise, 13 dependents of these packages may trigger further precompilation to work with the unexpected versions. 8784.3 ms ✓ LAMMPS 2 dependencies successfully precompiled in 16 seconds. 58 already precompiled. 6 dependencies precompiled but different versions are currently loaded (Base64, JuliaSyntaxHighlighting, Logging, Markdown, Serialization and StyledStrings). Restart julia to access the new versions. Otherwise, 13 dependents of these packages may trigger further precompilation to work with the unexpected versions. Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(71)...........: MPI_Init_thread(argc=(nil), argv=(nil), required=2, provided=0x7ffdb6403670) failed MPII_Init_thread(257)..............: MPID_Init(65)......................: init_world(169)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(400): GetSockInterfaceAddr(373)..........: gethostbyname failed, LAMMPS-primary-hZqxpiw1 (errno 1) MPI: Test Failed at /home/pkgeval/.julia/packages/LAMMPS/CBMl8/test/runtests.jl:484 Expression: success(pipeline(`$(MPI.mpiexec()) -n 2 $(Base.julia_cmd()) mpitest.jl`, stderr = stderr, stdout = stdout)) Stacktrace: [1] top-level scope @ ~/.julia/packages/LAMMPS/CBMl8/test/runtests.jl:484 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [3] macro expansion @ ~/.julia/packages/LAMMPS/CBMl8/test/runtests.jl:484 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] Test Summary: | Fail Total Time MPI | 1 1 36.6s RNG of the outermost testset: Random.Xoshiro(0xaecbd5f0e493c2ec, 0x92ac10abb9d3dfa8, 0xd99b84527587dd1a, 0x89cff2078354e147, 0x6b893bc4f508dc57) ERROR: LoadError: Some tests did not pass: 0 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/LAMMPS/CBMl8/test/runtests.jl:482 Testing failed after 201.72s ERROR: LoadError: Package LAMMPS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 376.5s: package has test failures